Bio-ToolBox v1.68 Perl 5 v5.18.2 MSWin32-x86-multi-thread-64int
- Status
- Fail
- From
- Alexandr Ciornii (CHORNY)
- Dist
-
Bio-ToolBox v1.68
- Platform
- Perl 5 v5.18.2 MSWin32-x86-multi-thread-64int
- Date
- 2021-01-25 19:04:22
- ID
- fd7e2278-6bfd-1014-a56d-d38d0f14cd2e
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-1.68
on perl 5.18.2, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\strawberry182\perl\bin\perl.exe ./Build test':
No Strand column to update! at t\01.Data.t line 285.
No Type column to update! at t\01.Data.t line 290.
t\01.Data.t ............ ok
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 682.
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 762.
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 825.
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 876.
# Looks like you planned 380 tests but ran 408.
t\02.parser.t ..........
Dubious, test returned 255 (wstat 65280, 0xff00)
All 380 subtests passed
t\03.GeneTools.t ....... ok
t\04.DB.t .............. skipped: Bio::DB::SeqFeature::Store not available
t\05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t\05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t\06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t\06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t\07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t\07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t\08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t\08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t\09.USeq.t ............ skipped: Optional module Bio::DB::USeq not available
t\10.Wiggle.t .......... skipped: Optional module Bio::Graphics not available
Test Summary Report
-------------------
t\02.parser.t (Wstat: 65280 Tests: 408 Failed: 28)
Failed tests: 381-408
Non-zero exit status: 255
Parse errors: Bad plan. You planned 380 tests but ran 408.
Files=14, Tests=689, 4 wallclock secs ( 0.19 usr + 0.03 sys = 0.22 CPU)
Result: FAIL
Failed 1/14 test programs. 28/689 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- ---- --------
Config::Simple 4.58 4.58
File::Which 0 1.09
Getopt::Long 2.24 2.42
List::MoreUtils 0 0.33
List::Util 0 1.38
Module::Load 0 0.24
Statistics::Descriptive 3 3.0607
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- ---- --------
Test::More 0 1.001002
configure_requires:
Module Need Have
----------------------- ---- --------
Module::Build 0 0.4203
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\strawberry182\c\bin;C:\strawberry182\perl\site\bin;C:\strawberry182\perl\bin
PERL5LIB = C:\strawberry182\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\strawberry182\cpan\build\Statistics-Lite-3.62-0/blib/lib;C:\strawberry182\cpan\build\Config-Simple-4.58-0/blib/arch;C:\strawberry182\cpan\build\Config-Simple-4.58-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 248
PERL5_CPAN_IS_RUNNING = 248
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1452,248
PERL_CR_SMOKER_CURRENT = Bio-ToolBox-1.68
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_HASH_SEED = 0x11111111
PERL_MM_USE_DEFAULT = 1
PROCESSOR_IDENTIFIER = x86 Family 18 Model 1 Stepping 0, AuthenticAMD
TEMP = C:\DOCUME~1\c\LOCALS~1\Temp
TERM = dumb
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\strawberry182\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.133380
Cwd 3.40
ExtUtils::CBuilder 0.280212
ExtUtils::Command 1.18
ExtUtils::Install 1.59
ExtUtils::MakeMaker 6.84
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.22
File::Spec 3.40
JSON 2.90
JSON::PP 2.27203
Module::Build 0.4203
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.30
Test::More 1.001002
YAML 0.90
YAML::Syck 1.27
version 0.9904
--
Summary of my perl5 (revision 5 version 18 subversion 2) configuration:
Platform:
osname=MSWin32, osvers=6.2, archname=MSWin32-x86-multi-thread-64int
uname='Win32 strawberry-perl 5.18.2.1 #1 Tue Jan 7 16:30:36 2014 i386'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -DUSE_PERLIO -fno-strict-aliasing -mms-bitfields',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.7.3', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\strawberry182\perl\lib\CORE" -L"C:\strawberry182\c\lib"'
libpth=C:\strawberry182\c\lib C:\strawberry182\c\i686-w64-mingw32\lib C:\strawberry182\c\lib\gcc\i686-w64-mingw32\4.7.3
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl518.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\strawberry182\perl\lib\CORE" -L"C:\strawberry182\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PERL_SAWAMPERSAND
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under MSWin32
Compiled at Jan 7 2014 16:39:31
%ENV:
PERL5LIB="C:\strawberry182\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\strawberry182\cpan\build\Statistics-Lite-3.62-0/blib/lib;C:\strawberry182\cpan\build\Config-Simple-4.58-0/blib/arch;C:\strawberry182\cpan\build\Config-Simple-4.58-0/blib/lib"
PERL5_CPANPLUS_IS_RUNNING="248"
PERL5_CPAN_IS_RUNNING="248"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1452,248"
PERL_CR_SMOKER_CURRENT="Bio-ToolBox-1.68"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_HASH_SEED="0x11111111"
PERL_MM_USE_DEFAULT="1"
@INC:
C:\strawberry182\cpan\build\Statistics-Lite-3.62-0/blib/arch
C:\strawberry182\cpan\build\Statistics-Lite-3.62-0/blib/lib
C:\strawberry182\cpan\build\Config-Simple-4.58-0/blib/arch
C:\strawberry182\cpan\build\Config-Simple-4.58-0/blib/lib
C:/strawberry182/perl/site/lib
C:/strawberry182/perl/vendor/lib
C:/strawberry182/perl/lib
.