Bio-ToolBox v1.64 Perl 5 v5.8.8 x86_64-linux
- Status
- Pass
- From
- Andreas J. König (ANDK)
- Dist
-
Bio-ToolBox v1.64
- Platform
- Perl 5 v5.8.8 x86_64-linux
- Date
- 2019-01-02 23:20:14
- ID
- f530f6b4-0ee4-11e9-b3dc-4f1b38c47247
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-1.64
on perl 5.8.8, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 346.
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 352.
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 358.
t/01.Data.t ............ ok
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 346.
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 352.
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 358.
t/02.parser.t .......... ok
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 346.
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 352.
Use of implicit split to @_ is deprecated at /tmp/loop_over_bdir-28597-_O1XM9/Bio-ToolBox-1.64-0/blib/lib/Bio/ToolBox/Data/file.pm line 358.
t/03.GeneTools.t ....... ok
t/04.DB.t .............. skipped: Bio::DB::SeqFeature::Store::memory or DB_File not available
t/05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t/05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t/06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t/06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t/07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t/07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t/08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t/08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t/09.USeq.t ............ skipped: Optional module Bio::DB::USeq not available
t/10.Wiggle.t .......... skipped: Optional module Bio::Graphics not available
All tests successful.
Files=14, Tests=630, 2 wallclock secs ( 0.14 usr 0.09 sys + 1.22 cusr 0.30 csys = 1.75 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- ---- --------
Config::Simple 4.58 4.58
File::Which 0 1.22
Getopt::Long 2.24 2.35
List::Util 0 1.50
Module::Load 0 0.32
Statistics::Descriptive 3 3.0702
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- ---- --------
Test::More 0 1.302140
configure_requires:
Module Need Have
----------------------- ---- --------
Module::Build 0 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = C
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB = /tmp/loop_over_bdir-28597-_O1XM9/Statistics-Lite-3.62-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Lite-3.62-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Descriptive-3.0702-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Descriptive-3.0702-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-0.428-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-0.428-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Test-LeakTrace-0.16-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Test-LeakTrace-0.16-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-XS-0.428-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-XS-0.428-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/XSLoader-0.24-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/XSLoader-0.24-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Exporter-Tiny-1.002001-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Exporter-Tiny-1.002001-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Config-Simple-4.58-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Config-Simple-4.58-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 5790
PERL5_CPAN_IS_RUNNING = 5790
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/sand/src/perl/repoperls/installed-perls/host/k93stretch/perl-5.8.8/21a6/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.21
CPAN::Meta 2.150010
Cwd 3.75
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.35
File::Spec 3.75
JSON 4.00
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature 0.83
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302140
YAML 1.27
YAML::Syck 1.31
version 0.9924
--
Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
Platform:
osname=linux, osvers=4.9.0-8-amd64, archname=x86_64-linux
uname='linux k93stretch 4.9.0-8-amd64 #1 smp debian 4.9.130-2 (2018-10-27) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93stretch/perl-5.8.8/21a6 -Dmyhostname=k93stretch -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Uuseithreads -Uuselongdouble -Doptimize=-g'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DDEBUGGING -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-g',
cppflags='-DDEBUGGING -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include'
ccversion='', gccversion='6.3.0 20170516', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: DEBUGGING PERL_MALLOC_WRAP USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_PERLIO
Built under linux
Compiled at Nov 14 2018 03:14:46
%ENV:
PERL5LIB="/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Lite-3.62-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Lite-3.62-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Descriptive-3.0702-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Descriptive-3.0702-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-0.428-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-0.428-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Test-LeakTrace-0.16-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Test-LeakTrace-0.16-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-XS-0.428-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-XS-0.428-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/XSLoader-0.24-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/XSLoader-0.24-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Exporter-Tiny-1.002001-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Exporter-Tiny-1.002001-0/blib/lib:/tmp/loop_over_bdir-28597-_O1XM9/Config-Simple-4.58-0/blib/arch:/tmp/loop_over_bdir-28597-_O1XM9/Config-Simple-4.58-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="5790"
PERL5_CPAN_IS_RUNNING="5790"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Lite-3.62-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Lite-3.62-0/blib/lib
/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Descriptive-3.0702-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/Statistics-Descriptive-3.0702-0/blib/lib
/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-0.428-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-0.428-0/blib/lib
/tmp/loop_over_bdir-28597-_O1XM9/Test-LeakTrace-0.16-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/Test-LeakTrace-0.16-0/blib/lib
/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-XS-0.428-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/List-MoreUtils-XS-0.428-0/blib/lib
/tmp/loop_over_bdir-28597-_O1XM9/XSLoader-0.24-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/XSLoader-0.24-0/blib/lib
/tmp/loop_over_bdir-28597-_O1XM9/Exporter-Tiny-1.002001-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/Exporter-Tiny-1.002001-0/blib/lib
/tmp/loop_over_bdir-28597-_O1XM9/Config-Simple-4.58-0/blib/arch
/tmp/loop_over_bdir-28597-_O1XM9/Config-Simple-4.58-0/blib/lib
/home/sand/src/perl/repoperls/installed-perls/host/k93stretch/perl-5.8.8/21a6/lib/5.8.8/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93stretch/perl-5.8.8/21a6/lib/5.8.8
/home/sand/src/perl/repoperls/installed-perls/host/k93stretch/perl-5.8.8/21a6/lib/site_perl/5.8.8/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93stretch/perl-5.8.8/21a6/lib/site_perl/5.8.8
/home/sand/src/perl/repoperls/installed-perls/host/k93stretch/perl-5.8.8/21a6/lib/site_perl
.