Bio-Das-Lite v2.11 Perl 5 v5.29.10 amd64-freebsd
- Status
- Fail
- From
- Slaven Rezić (SREZIC)
- Dist
-
Bio-Das-Lite v2.11
- Platform
- Perl 5 v5.29.10 amd64-freebsd
- Date
- 2019-05-05 03:07:11
- ID
- dff0fc8c-6ee2-11e9-8ef5-ca7e1f24ea8f
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Roger Pettett,
This is a computer-generated report for Bio-Das-Lite-2.11
on perl 5.29.10, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/00-critic.t ............... skipped: Author test. Set $ENV{TEST_AUTHOR} to a true value to run.
t/00-distribution.t ......... ok
t/00-pod.t .................. ok
t/00-podcoverage.t .......... ok
# Failed test 'feature-by-id element was a hash'
# at t/01-general.t line 52.
# Looks like you failed 1 test of 7.
t/01-general.t ..............
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/7 subtests
# Failed test 'HTTP OK, X-DAS OK (code)'
# at t/02-statuscodes.t line 27.
# got: '301'
# expected: '200'
# Failed test 'HTTP OK, X-DAS OK (message)'
# at t/02-statuscodes.t line 28.
# got: 'Moved Permanently'
# expected: 'OK'
# Failed test 'HTTP OK, X-DAS-Status error (code)'
# at t/02-statuscodes.t line 27.
# got: '301'
# expected: '401'
# Failed test 'HTTP OK, X-DAS-Status error (message)'
# at t/02-statuscodes.t line 28.
# got: 'Moved Permanently'
# expected: 'Bad data source (data source unknown)'
# Failed test 'HTTP error, no X-DAS-Status (code)'
# at t/02-statuscodes.t line 27.
# got: '500'
# expected: '404'
# Failed test 'HTTP error, no X-DAS-Status (message)'
# at t/02-statuscodes.t line 28.
# got: 'Timeout was reached'
# expected: 'Not Found'
# Looks like you failed 6 tests of 6.
t/02-statuscodes.t ..........
Dubious, test returned 6 (wstat 1536, 0x600)
Failed 6/6 subtests
# Failed test 'dsns call returned OK status (service http://das.sanger.ac.uk/das status 301 Moved Permanently)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.sanger.ac.uk/das)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.sanger.ac.uk/das)'
# at t/05-singledsn.t line 41.
# Failed test 'dsns call returned OK status (service http://das.ensembl.org/das/dsn status 503 Server Temporarily Unavailable)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.ensembl.org/das/dsn)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.ensembl.org/das/dsn)'
# at t/05-singledsn.t line 41.
# Failed test 'dsns call returned OK status (service http://das.ensembl.org/das/dsn#foo status 503 Server Temporarily Unavailable)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.ensembl.org/das/dsn#foo)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.ensembl.org/das/dsn#foo)'
# at t/05-singledsn.t line 41.
# Looks like you failed 9 tests of 33.
t/05-singledsn.t ............
Dubious, test returned 9 (wstat 2304, 0x900)
Failed 9/33 subtests
t/06-singledsn-singleseg.t .. ok
# Failed test 'features hash contains an array'
# at t/07-singledsn-multiseg.t line 27.
# got: ''
# expected: 'ARRAY'
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/features?segment=15:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/features?segment=1:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Failed test 'sequence hash contains an array'
# at t/07-singledsn-multiseg.t line 27.
# got: ''
# expected: 'ARRAY'
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/sequence?segment=1:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/sequence?segment=15:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Looks like you failed 6 tests of 10.
t/07-singledsn-multiseg.t ...
Dubious, test returned 6 (wstat 1536, 0x600)
Failed 6/10 subtests
# Failed test 'dsns call returned OK status (status is 503 Server Temporarily Unavailable)'
# at t/10-multidsn.t line 34.
# Failed test 'dsns call gave a arrayref value for the one key'
# at t/10-multidsn.t line 36.
Can't use an undefined value as an ARRAY reference at t/10-multidsn.t line 38.
# Looks like your test exited with 255 just after 9.
t/10-multidsn.t .............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 4/11 subtests
t/20-authentication.t ....... ok
t/21-proxy.t ................ ok
t/40-dna.t .................. ok
t/45-sequence.t ............. ok
t/50-entry_points.t ......... ok
t/60-features.t ............. ok
t/60-features_chunked.t ..... ok
t/60-features_empty.t ....... ok
t/61-features_group.t ....... ok
t/70-alignment.t ............ ok
t/80-structure.t ............ ok
t/90-sources.t .............. ok
Test Summary Report
-------------------
t/01-general.t (Wstat: 256 Tests: 7 Failed: 1)
Failed test: 7
Non-zero exit status: 1
t/02-statuscodes.t (Wstat: 1536 Tests: 6 Failed: 6)
Failed tests: 1-6
Non-zero exit status: 6
t/05-singledsn.t (Wstat: 2304 Tests: 33 Failed: 9)
Failed tests: 8-10, 19-21, 30-32
Non-zero exit status: 9
t/07-singledsn-multiseg.t (Wstat: 1536 Tests: 10 Failed: 6)
Failed tests: 3-5, 8-10
Non-zero exit status: 6
t/10-multidsn.t (Wstat: 65280 Tests: 9 Failed: 2)
Failed tests: 8-9
Non-zero exit status: 255
Parse errors: Bad plan. You planned 11 tests but ran 9.
Files=22, Tests=135, 15 wallclock secs ( 0.09 usr 0.09 sys + 13.69 cusr 1.21 csys = 15.08 CPU)
Result: FAIL
Failed 5/22 test programs. 24/135 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
-------------- ---- --------
Carp 1.02 1.50
English 1.01 1.10
HTTP::Response 1.49 6.18
Readonly 1.03 2.05
WWW::Curl 4.07 4.17
build_requires:
Module Need Have
-------------- ---- --------
Test::More 0.8 1.302164
configure_requires:
Module Need Have
-------------- ---- --------
Module::Build 0.36 0.4229
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LC_ALL = de_DE.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/freebsd12.0:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/usr/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 92325
PERL5_CPAN_IS_RUNNING = 92325
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 15676,92325
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2019050412/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_PARALLEL_SMOKER = yes
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/local/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2019050412
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/perl5.29.10p/bin/perl5.29.10
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.26
CPAN::Meta 2.150010
Cwd 3.78
ExtUtils::CBuilder 0.280231
ExtUtils::Command 7.36
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.36
ExtUtils::Manifest 1.72
ExtUtils::ParseXS 3.40
File::Spec 3.78
JSON 4.02
JSON::PP 4.02
Module::Build 0.4229
Module::Signature 0.83
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302164
YAML 1.28
YAML::Syck 1.31
version 0.9924
--
Summary of my perl5 (revision 5 version 29 subversion 10) configuration:
Platform:
osname=freebsd
osvers=12.0-stable
archname=amd64-freebsd
uname='freebsd cloud1.bbbike.org 12.0-stable freebsd 12.0-stable 8077844c632(stable12) generic amd64 '
config_args='-ds -e -Dprefix=/usr/perl5.29.10p -Dusedevel -Dusemallocwrap=no -Dcf_email=srezic@cpan.org -Doptimize=-O2 -pipe'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_FORTIFY_SOURCE=2'
optimize='-O2 -pipe'
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='4.2.1 Compatible FreeBSD Clang 8.0.0 (tags/RELEASE_800/final 356365)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags ='-pthread -Wl,-E -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/lib/clang/8.0.0/lib /usr/lib
libs=-lpthread -lgdbm -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -ldl -lm -lcrypt -lutil -lc
libc=
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags=' '
cccdlflags='-DPIC -fPIC'
lddlflags='-shared -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under freebsd
Compiled at Apr 20 2019 22:03:13
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="92325"
PERL5_CPAN_IS_RUNNING="92325"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="15676,92325"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2019050412/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_PARALLEL_SMOKER="yes"
PERL_USE_UNSAFE_INC="1"
@INC:
/usr/perl5.29.10p/lib/site_perl/5.29.10/amd64-freebsd
/usr/perl5.29.10p/lib/site_perl/5.29.10
/usr/perl5.29.10p/lib/5.29.10/amd64-freebsd
/usr/perl5.29.10p/lib/5.29.10
.