Proch-N50 v1.5.6-TRIAL Perl 5 v5.16.3 darwin-thread-multi-2level
- Status
- Pass
- From
- David Cantrell (DCANTRELL)
- Dist
-
Proch-N50 v1.5.6-TRIAL
- Platform
- Perl 5 v5.16.3 darwin-thread-multi-2level
- Date
- 2023-01-12 03:54:54
- ID
- df702f82-922c-11ed-afd0-d01af1b1a07a
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andrea Telatin,
This is a computer-generated report for Proch-N50-1.5.6-TRIAL
on perl 5.16.3, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/Users/cpantesting/cpantesting/perl-5.16.3/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/01-ext.t ......................... skipped: these tests are for release candidate testing
t/10-FASTX-reader-seq.t ............ ok
t/10_basic_test.t .................. ok
t/10_FASTX-reader.t ................ ok
t/11_calculateN50.t ................ ok
t/11_seqfu.t ....................... ok
Can't exec "seqfu": No such file or directory at /Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/blib/lib/Proch/Seqfu.pm line 84.
Use of uninitialized value $cmd in scalar chomp at /Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/blib/lib/Proch/Seqfu.pm line 85.
Use of uninitialized value $cmd in pattern match (m//) at /Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/blib/lib/Proch/Seqfu.pm line 86.
Can't exec "seqfu": No such file or directory at /Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/blib/lib/Proch/Seqfu.pm line 84.
Use of uninitialized value $cmd in scalar chomp at /Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/blib/lib/Proch/Seqfu.pm line 85.
Use of uninitialized value $cmd in pattern match (m//) at /Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/blib/lib/Proch/Seqfu.pm line 86.
t/11_seqfu_ext.t ................... ok
t/12_new_stats.t ................... ok
t/12_stats.t ....................... ok
t/13_json.t ........................ ok
t/14_bad_file.t .................... ok
t/15_bad_json.t .................... ok
t/30_Windows.t ..................... ok
# N50 cmd: </Users/cpantesting/cpantesting/perl-5.16.3/bin/perl "/Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/t/../bin/n50" "/Users/cpantesting/cpantesting/perl-5.16.3/.cpan/build/Proch-N50-1.5.6-B0ufCQ/t/../data/small_test.fa">
# N50 output: <65
>
t/49-prebins.t ..................... ok
STDOUT=[1;34mFASTX N50, ver. 4.2.0[0m
[34mPr...[0m
STDERR=OK[0m
TEST=(0)[0m
t/50-n50bin.t ...................... ok
t/author-50-helps.t ................ skipped: these tests are for release candidate testing
t/author-50-n50bin.t ............... skipped: these tests are for release candidate testing
t/author-50-version.t .............. skipped: these tests are for release candidate testing
t/author-51-other-bins.t ........... skipped: these tests are for release candidate testing
t/author-52-cat.t .................. skipped: these tests are for release candidate testing
t/author-52-grep.t ................. skipped: these tests are for release candidate testing
t/author-53-count.t ................ skipped: these tests are for release candidate testing
t/author-54-extract.t .............. skipped: these tests are for release candidate testing
t/author-55-uniq.t ................. skipped: these tests are for release candidate testing
t/author-99_posse.t ................ skipped: these tests are for release candidate testing
t/release-00-pod.t ................. skipped: these tests are for release candidate testing
t/release-01-pod-coverage.t ........ skipped: these tests are for release candidate testing
t/release-03-minimum-standards.t ... skipped: these tests are for release candidate testing
t/release-04-check-cpan-version.t .. skipped: these tests are for release candidate testing
t/release-05-changes-ver.t ......... skipped: these tests are for release candidate testing
t/release-05-changes.t ............. skipped: these tests are for release candidate testing
t/release-06-fastx-reader.t ........ skipped: these tests are for release candidate testing
t/release-19_exec.t ................ skipped: these tests are for release candidate testing
t/release-20_custom.t .............. skipped: these tests are for release candidate testing
t/release-20_stdin.t ............... skipped: these tests are for release candidate testing
t/release-21_bin.t ................. skipped: these tests are for release candidate testing
t/release-22_csv.t ................. skipped: these tests are for release candidate testing
All tests successful.
Files=37, Tests=42, 4 wallclock secs ( 0.19 usr 0.17 sys + 3.49 cusr 0.67 csys = 4.52 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ------ --------
FASTX::Reader v1.3.0 1.8.1
Getopt::Long 2.39 2.54
JSON::PP 2.27 4.05
perl 5.012 5.016003
PerlIO::encoding 0 0.15
Pod::Usage 1.61 2.03
Text::ASCIITable 0 0.22
build_requires:
Module Need Have
------------------- ------ --------
ExtUtils::MakeMaker 0 7.58
configure_requires:
Module Need Have
------------------- ------ --------
ExtUtils::MakeMaker 0 7.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /Users/cpantesting/perl5/perlbrew/bin:/Users/cpantesting/perl5/perlbrew/perls/perl-5.32.0/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/Apple/usr/bin:/Users/cpantesting/.cargo/bin
PERL = 5.16.3
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 50938
PERL5_CPAN_IS_RUNNING = 50938
PERLBREW_HOME = /Users/cpantesting/.perlbrew
PERLBREW_MANPATH = /Users/cpantesting/perl5/perlbrew/perls/perl-5.32.0/man
PERLBREW_PATH = /Users/cpantesting/perl5/perlbrew/bin:/Users/cpantesting/perl5/perlbrew/perls/perl-5.32.0/bin
PERLBREW_PERL = perl-5.32.0
PERLBREW_ROOT = /Users/cpantesting/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.94
PERLBREW_VERSION = 0.94
PERLVER = 5.16.3
PERL_INLINE_DIRECTORY = /Users/cpantesting/.Inline-5.16.3
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 0
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /Users/cpantesting/cpantesting/perl-5.16.3/bin/perl
$UID/$EUID = 503 / 503
$GID = 20 20 12 61 703 702 701 100
$EGID = 20 20 12 61 703 702 701 100
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9800
CPAN::Meta 2.143240
Cwd 3.39_02
ExtUtils::CBuilder 0.280235
ExtUtils::Command 7.58
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.58
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.16
File::Spec 3.39_02
JSON 4.10
JSON::PP 4.05
Module::Build 0.4232
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.44
Test::More 1.302183
YAML 1.30
YAML::Syck n/a
version 0.9929
--
Summary of my perl5 (revision 5 version 16 subversion 3) configuration:
Platform:
osname=darwin, osvers=19.6.0, archname=darwin-thread-multi-2level
uname='darwin harrow.local 19.6.0 darwin kernel version 19.6.0: thu oct 29 22:56:45 pdt 2020; root:xnu-6153.141.2.2~1release_x86_64 x86_64 '
config_args='-de -Dusethreads -Dprefix=/Users/cpantesting/cpantesting/perl-5.16.3'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
optimize='-O3',
cppflags='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='Apple LLVM 12.0.0 (clang-1200.0.32.27)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib
libs=-lgdbm -ldbm -ldl -lm -lutil -lc
perllibs=-ldl -lm -lutil -lc
libc=, so=dylib, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV PERL_IMPLICIT_CONTEXT
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV USE_64_BIT_ALL
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
USE_REENTRANT_API
Built under darwin
Compiled at Dec 29 2020 22:52:51
%ENV:
PERL="5.16.3"
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="50938"
PERL5_CPAN_IS_RUNNING="50938"
PERLBREW_HOME="/Users/cpantesting/.perlbrew"
PERLBREW_MANPATH="/Users/cpantesting/perl5/perlbrew/perls/perl-5.32.0/man"
PERLBREW_PATH="/Users/cpantesting/perl5/perlbrew/bin:/Users/cpantesting/perl5/perlbrew/perls/perl-5.32.0/bin"
PERLBREW_PERL="perl-5.32.0"
PERLBREW_ROOT="/Users/cpantesting/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.94"
PERLBREW_VERSION="0.94"
PERLVER="5.16.3"
PERL_INLINE_DIRECTORY="/Users/cpantesting/.Inline-5.16.3"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="0"
@INC:
/Users/cpantesting/cpantesting/perl-5.16.3/lib/site_perl/5.16.3/darwin-thread-multi-2level
/Users/cpantesting/cpantesting/perl-5.16.3/lib/site_perl/5.16.3
/Users/cpantesting/cpantesting/perl-5.16.3/lib/5.16.3/darwin-thread-multi-2level
/Users/cpantesting/cpantesting/perl-5.16.3/lib/5.16.3
.