Proch-N50 v1.5.6-TRIAL Perl 5 v5.34.1 x86_64-linux
- Status
- Pass
- From
- David Solimano
- Dist
-
Proch-N50 v1.5.6-TRIAL
- Platform
- Perl 5 v5.34.1 x86_64-linux
- Date
- 2023-01-12 08:12:24
- ID
- d8b813e8-9250-11ed-a2da-a7a7058e3f0a
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andrea Telatin,
This is a computer-generated report for Proch-N50-1.5.6-TRIAL
on perl 5.34.1, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/home/perluser/perl5/perlbrew/perls/perl-5.34.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/01-ext.t ......................... skipped: these tests are for release candidate testing
t/10-FASTX-reader-seq.t ............ ok
t/10_basic_test.t .................. ok
t/10_FASTX-reader.t ................ ok
t/11_calculateN50.t ................ ok
t/11_seqfu.t ....................... ok
Can't exec "seqfu": No such file or directory at /home/perluser/.cpan/build/Proch-N50-1.5.6-0/blib/lib/Proch/Seqfu.pm line 84.
Use of uninitialized value $cmd in scalar chomp at /home/perluser/.cpan/build/Proch-N50-1.5.6-0/blib/lib/Proch/Seqfu.pm line 85.
Use of uninitialized value $cmd in pattern match (m//) at /home/perluser/.cpan/build/Proch-N50-1.5.6-0/blib/lib/Proch/Seqfu.pm line 86.
Can't exec "seqfu": No such file or directory at /home/perluser/.cpan/build/Proch-N50-1.5.6-0/blib/lib/Proch/Seqfu.pm line 84.
Use of uninitialized value $cmd in scalar chomp at /home/perluser/.cpan/build/Proch-N50-1.5.6-0/blib/lib/Proch/Seqfu.pm line 85.
Use of uninitialized value $cmd in pattern match (m//) at /home/perluser/.cpan/build/Proch-N50-1.5.6-0/blib/lib/Proch/Seqfu.pm line 86.
t/11_seqfu_ext.t ................... ok
t/12_new_stats.t ................... ok
t/12_stats.t ....................... ok
t/13_json.t ........................ ok
t/14_bad_file.t .................... ok
t/15_bad_json.t .................... ok
t/30_Windows.t ..................... ok
# N50 cmd: </home/perluser/perl5/perlbrew/perls/perl-5.34.1/bin/perl "/home/perluser/.cpan/build/Proch-N50-1.5.6-0/t/../bin/n50" "/home/perluser/.cpan/build/Proch-N50-1.5.6-0/t/../data/small_test.fa">
# N50 output: <65
>
t/49-prebins.t ..................... ok
STDOUT=[1;34mFASTX N50, ver. 4.2.0[0m
[34mPr...[0m
STDERR=OK[0m
TEST=(0)[0m
t/50-n50bin.t ...................... ok
t/author-50-helps.t ................ skipped: these tests are for release candidate testing
t/author-50-n50bin.t ............... skipped: these tests are for release candidate testing
t/author-50-version.t .............. skipped: these tests are for release candidate testing
t/author-51-other-bins.t ........... skipped: these tests are for release candidate testing
t/author-52-cat.t .................. skipped: these tests are for release candidate testing
t/author-52-grep.t ................. skipped: these tests are for release candidate testing
t/author-53-count.t ................ skipped: these tests are for release candidate testing
t/author-54-extract.t .............. skipped: these tests are for release candidate testing
t/author-55-uniq.t ................. skipped: these tests are for release candidate testing
t/author-99_posse.t ................ skipped: these tests are for release candidate testing
t/release-00-pod.t ................. skipped: these tests are for release candidate testing
t/release-01-pod-coverage.t ........ skipped: these tests are for release candidate testing
t/release-03-minimum-standards.t ... skipped: these tests are for release candidate testing
t/release-04-check-cpan-version.t .. skipped: these tests are for release candidate testing
t/release-05-changes-ver.t ......... skipped: these tests are for release candidate testing
t/release-05-changes.t ............. skipped: these tests are for release candidate testing
t/release-06-fastx-reader.t ........ skipped: these tests are for release candidate testing
t/release-19_exec.t ................ skipped: these tests are for release candidate testing
t/release-20_custom.t .............. skipped: these tests are for release candidate testing
t/release-20_stdin.t ............... skipped: these tests are for release candidate testing
t/release-21_bin.t ................. skipped: these tests are for release candidate testing
t/release-22_csv.t ................. skipped: these tests are for release candidate testing
All tests successful.
Files=37, Tests=42, 3 wallclock secs ( 0.14 usr 0.22 sys + 2.19 cusr 1.04 csys = 3.59 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ------ ----------
FASTX::Reader v1.3.0 1.8.1
Getopt::Long 2.39 2.54
JSON::PP 2.27 4.12
perl 5.012 5.034001
PerlIO::encoding 0 0.30
Pod::Usage 1.61 2.03
Text::ASCIITable 0 0.22
build_requires:
Module Need Have
------------------- ------ ----------
ExtUtils::MakeMaker 0 7.64
configure_requires:
Module Need Have
------------------- ------ ----------
ExtUtils::MakeMaker 0 7.64
opt_build_requires:
Module Need Have
------------------- ------ ----------
IPC::Cmd 0 1.04
IPC::Run 0 20220807.0
Pod::Markdown 3.300 3.300
Text::ASCIITable 0.2 0.22
Time::Out 0 0.11
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
PATH = /home/perluser/perl5/perlbrew/bin:/home/perluser/perl5/perlbrew/perls/perl-5.34.1/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB = /home/perluser/.cpan/build/IO-Tty-1.17-2/blib/arch:/home/perluser/.cpan/build/IO-Tty-1.17-2/blib/lib:/home/perluser/.cpan/build/Readonly-2.05-2/blib/arch:/home/perluser/.cpan/build/Readonly-2.05-2/blib/lib:/home/perluser/.cpan/build/IPC-Run-20220807.0-1/blib/arch:/home/perluser/.cpan/build/IPC-Run-20220807.0-1/blib/lib:/home/perluser/.cpan/build/Pod-Markdown-3.300-0/blib/arch:/home/perluser/.cpan/build/Pod-Markdown-3.300-0/blib/lib:/home/perluser/.cpan/build/Test-Differences-0.69-3/blib/arch:/home/perluser/.cpan/build/Test-Differences-0.69-3/blib/lib:/home/perluser/.cpan/build/Text-Diff-1.45-4/blib/arch:/home/perluser/.cpan/build/Text-Diff-1.45-4/blib/lib:/home/perluser/.cpan/build/Algorithm-Diff-1.201-4/blib/arch:/home/perluser/.cpan/build/Algorithm-Diff-1.201-4/blib/lib:/home/perluser/.cpan/build/Time-Out-0.11-0/blib/arch:/home/perluser/.cpan/build/Time-Out-0.11-0/blib/lib:/home/perluser/.cpan/build/Text-ASCIITable-0.22-1/blib/arch:/home/perluser/.cpan/build/Text-ASCIITable-0.22-1/blib/lib:/home/perluser/.cpan/build/FASTX-Reader-1.8.1-0/blib/arch:/home/perluser/.cpan/build/FASTX-Reader-1.8.1-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 23434
PERL5_CPAN_IS_RUNNING = 23434
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1665,23434
PERLBREW_HOME = /home/perluser/.perlbrew
PERLBREW_MANPATH = /home/perluser/perl5/perlbrew/perls/perl-5.34.1/man
PERLBREW_PATH = /home/perluser/perl5/perlbrew/bin:/home/perluser/perl5/perlbrew/perls/perl-5.34.1/bin
PERLBREW_PERL = perl-5.34.1
PERLBREW_ROOT = /home/perluser/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.96
PERLBREW_VERSION = 0.96
PERL_CR_SMOKER_CURRENT = Proch-N50-1.5.6-TRIAL
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/perluser/perl5/perlbrew/perls/perl-5.34.1/bin/perl
$UID/$EUID = 1001 / 1001
$GID = 1001 1001
$EGID = 1001 1001
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.34
CPAN::Meta 2.150010
Cwd 3.80
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.64
ExtUtils::Install 2.20
ExtUtils::MakeMaker 7.64
ExtUtils::Manifest 1.73
ExtUtils::ParseXS 3.44
File::Spec 3.80
JSON n/a
JSON::PP 4.12
Module::Build 0.4232
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.44
Test::More 1.302191
YAML n/a
YAML::Syck n/a
version 0.9929
--
Summary of my perl5 (revision 5 version 34 subversion 1) configuration:
Platform:
osname=linux
osvers=4.19.0-12-amd64
archname=x86_64-linux
uname='linux csi-nyp-lensrv 4.19.0-12-amd64 #1 smp debian 4.19.152-1 (2020-10-18) x86_64 gnulinux '
config_args='-de -Dprefix=/home/perluser/perl5/perlbrew/perls/perl-5.34.1 -Aeval:scriptdir=/home/perluser/perl5/perlbrew/perls/perl-5.34.1/bin'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='8.3.0'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.28.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.28'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Dec 20 2022 22:02:38
%ENV:
PERL5LIB="/home/perluser/.cpan/build/IO-Tty-1.17-2/blib/arch:/home/perluser/.cpan/build/IO-Tty-1.17-2/blib/lib:/home/perluser/.cpan/build/Readonly-2.05-2/blib/arch:/home/perluser/.cpan/build/Readonly-2.05-2/blib/lib:/home/perluser/.cpan/build/IPC-Run-20220807.0-1/blib/arch:/home/perluser/.cpan/build/IPC-Run-20220807.0-1/blib/lib:/home/perluser/.cpan/build/Pod-Markdown-3.300-0/blib/arch:/home/perluser/.cpan/build/Pod-Markdown-3.300-0/blib/lib:/home/perluser/.cpan/build/Test-Differences-0.69-3/blib/arch:/home/perluser/.cpan/build/Test-Differences-0.69-3/blib/lib:/home/perluser/.cpan/build/Text-Diff-1.45-4/blib/arch:/home/perluser/.cpan/build/Text-Diff-1.45-4/blib/lib:/home/perluser/.cpan/build/Algorithm-Diff-1.201-4/blib/arch:/home/perluser/.cpan/build/Algorithm-Diff-1.201-4/blib/lib:/home/perluser/.cpan/build/Time-Out-0.11-0/blib/arch:/home/perluser/.cpan/build/Time-Out-0.11-0/blib/lib:/home/perluser/.cpan/build/Text-ASCIITable-0.22-1/blib/arch:/home/perluser/.cpan/build/Text-ASCIITable-0.22-1/blib/lib:/home/perluser/.cpan/build/FASTX-Reader-1.8.1-0/blib/arch:/home/perluser/.cpan/build/FASTX-Reader-1.8.1-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="23434"
PERL5_CPAN_IS_RUNNING="23434"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1665,23434"
PERLBREW_HOME="/home/perluser/.perlbrew"
PERLBREW_MANPATH="/home/perluser/perl5/perlbrew/perls/perl-5.34.1/man"
PERLBREW_PATH="/home/perluser/perl5/perlbrew/bin:/home/perluser/perl5/perlbrew/perls/perl-5.34.1/bin"
PERLBREW_PERL="perl-5.34.1"
PERLBREW_ROOT="/home/perluser/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.96"
PERLBREW_VERSION="0.96"
PERL_CR_SMOKER_CURRENT="Proch-N50-1.5.6-TRIAL"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/perluser/.cpan/build/IO-Tty-1.17-2/blib/arch
/home/perluser/.cpan/build/IO-Tty-1.17-2/blib/lib
/home/perluser/.cpan/build/Readonly-2.05-2/blib/arch
/home/perluser/.cpan/build/Readonly-2.05-2/blib/lib
/home/perluser/.cpan/build/IPC-Run-20220807.0-1/blib/arch
/home/perluser/.cpan/build/IPC-Run-20220807.0-1/blib/lib
/home/perluser/.cpan/build/Pod-Markdown-3.300-0/blib/arch
/home/perluser/.cpan/build/Pod-Markdown-3.300-0/blib/lib
/home/perluser/.cpan/build/Test-Differences-0.69-3/blib/arch
/home/perluser/.cpan/build/Test-Differences-0.69-3/blib/lib
/home/perluser/.cpan/build/Text-Diff-1.45-4/blib/arch
/home/perluser/.cpan/build/Text-Diff-1.45-4/blib/lib
/home/perluser/.cpan/build/Algorithm-Diff-1.201-4/blib/arch
/home/perluser/.cpan/build/Algorithm-Diff-1.201-4/blib/lib
/home/perluser/.cpan/build/Time-Out-0.11-0/blib/arch
/home/perluser/.cpan/build/Time-Out-0.11-0/blib/lib
/home/perluser/.cpan/build/Text-ASCIITable-0.22-1/blib/arch
/home/perluser/.cpan/build/Text-ASCIITable-0.22-1/blib/lib
/home/perluser/.cpan/build/FASTX-Reader-1.8.1-0/blib/arch
/home/perluser/.cpan/build/FASTX-Reader-1.8.1-0/blib/lib
/home/perluser/perl5/perlbrew/perls/perl-5.34.1/lib/site_perl/5.34.1/x86_64-linux
/home/perluser/perl5/perlbrew/perls/perl-5.34.1/lib/site_perl/5.34.1
/home/perluser/perl5/perlbrew/perls/perl-5.34.1/lib/5.34.1/x86_64-linux
/home/perluser/perl5/perlbrew/perls/perl-5.34.1/lib/5.34.1
.