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From: Chris Williams (BINGOS)
Subject: FAIL UMLS-Interface-1.51 v5.14.3 Debian GNU/kFreeBSD
Date: 2016-10-22T03:08:33Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear BTMCINNES,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9160. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
PERL_DL_NONLAZY=1 "/home/cpan/pit/thr/perl-5.14.3/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/access.t ................... ok
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/findCuiDepth.t .............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 1/1 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/findDFS.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/7 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/findLeastCommonSubsumer.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 3/3 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/findPathToRoot.t ...........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/7 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/findShortestPath.t .........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/5 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/functions.t ................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 27/28 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getAssociatedCuis.t ........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/7 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getAssociatedTerms.t .......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 9/9 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getChildren.t ..............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 15/15 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getCompounds.t .............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 3/3 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getCuiDef.t ................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 3/3 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getCuiList.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 3/3 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getExtendedDef.t ...........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 17/17 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getIC.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/7 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
t/getParents.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 15/15 subtests
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/getRelated.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 25/25 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/getRelations.t .............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 15/15 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/getSemanticGroups.t ........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 13/13 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/getSemanticRelation.t ......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 3/3 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/getStDef.t .................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/5 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# Looks like your test exited with 255 before it could output anything.
t/getSts.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 13/13 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at t/mysql.t line 28
Can't call method "prepare" on an undefined value at t/mysql.t line 36.
t/mysql.t ....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 7/8 subtests
DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
t/options.t ..................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 2/3 subtests
# Failed test at t/prgs.t line 48.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getTermList\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 63.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getTermList\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 77.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getTermList\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 93.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getTermList\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 107.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getAllPreferredTerm\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 121.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getAllPreferredTerm\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 135.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:\s*UMLS\-Interface Configuration Information\:\s*\(Default Information - no config file\)\s*Sources \(SAB\)\:\s*MSH\s*Relations \(REL\)\:\s*PAR\s*CHD\s*Sources \(SABDEF\)\:\s*UMLS\_ALL\s*Relations \(RELDEF\)\:\s*UMLS\_ALL\s*ERROR\:\s*UMLS\:\:Interface\:\:CuiFinder\-\>_getPreferredTerm\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 153.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getTermList\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 167.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getTermList\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 181.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getTermList\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 195.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:There are no definitions for the semantic type \(dkj\))'
# Failed test at t/prgs.t line 209.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getAllTerms\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Failed test at t/prgs.t line 223.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:No CUIs are associated with C98\.)'
# Failed test at t/prgs.t line 237.
# 'DBI connect('umls;mysql_read_default_group=client;','',...) failed: Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/CuiFinder.pm line 2465
# Can't call method "err" on an undefined value at /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib/UMLS/Interface/ErrorHandler.pm line 113.
# '
# doesn't match '(?^:ERROR\: UMLS\:\:Interface\:\:CuiFinder\-\>_getAllTerms\s*Invalid CUI \(Error Code 6\)\.\s*Concept \(C98\) is not valid\.)'
# Looks like you failed 14 tests of 52.
t/prgs.t .....................
Dubious, test returned 14 (wstat 3584, 0xe00)
Failed 14/52 subtests
Test Summary Report
-------------------
t/findCuiDepth.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 1 tests but ran 0.
t/findDFS.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 0.
t/findLeastCommonSubsumer.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 3 tests but ran 0.
t/findPathToRoot.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 0.
t/findShortestPath.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 5 tests but ran 0.
t/functions.t (Wstat: 65280 Tests: 1 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 28 tests but ran 1.
t/getAssociatedCuis.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 0.
t/getAssociatedTerms.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 9 tests but ran 0.
t/getChildren.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 15 tests but ran 0.
t/getCompounds.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 3 tests but ran 0.
t/getCuiDef.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 3 tests but ran 0.
t/getCuiList.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 3 tests but ran 0.
t/getExtendedDef.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 17 tests but ran 0.
t/getIC.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 0.
t/getParents.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 15 tests but ran 0.
t/getRelated.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 25 tests but ran 0.
t/getRelations.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 15 tests but ran 0.
t/getSemanticGroups.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 13 tests but ran 0.
t/getSemanticRelation.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 3 tests but ran 0.
t/getStDef.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 5 tests but ran 0.
t/getSts.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 13 tests but ran 0.
t/mysql.t (Wstat: 65280 Tests: 2 Failed: 1)
Failed test: 2
Non-zero exit status: 255
Parse errors: Bad plan. You planned 8 tests but ran 2.
t/options.t (Wstat: 65280 Tests: 1 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 3 tests but ran 1.
t/prgs.t (Wstat: 3584 Tests: 52 Failed: 14)
Failed tests: 7, 10, 13, 17, 20, 23, 26, 30, 33, 36, 39
42, 45, 48
Non-zero exit status: 14
Files=25, Tests=57, 4 wallclock secs ( 0.02 usr 0.05 sys + 2.53 cusr 0.90 csys = 3.50 CPU)
Result: FAIL
Failed 24/25 test programs. 15/57 subtests failed.
Makefile:1155: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 14
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
DBD::mysql 4.038 0
DBI 1.636 0
Digest::SHA1 2.13 2.12
ExtUtils::MakeMaker 7.22 0
File::Path 2.12 2.08
File::Spec 3.62 3.31
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9160
CPANPLUS::Dist::Build 0.80
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.22
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.22
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
Module::Build 0.4218
Pod::Parser 1.37
Pod::Simple 3.16
Test2 1.302052
Test::Harness 3.36
Test::More 1.302052
version 0.9917
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.98.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB.UTF-8
LANGUAGE = en_GB:en
NONINTERACTIVE_TESTING = 1
PATH = /home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/script:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/UuZ_cZBWn1/DBI-1.636/blib/script:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB = :/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/UuZ_cZBWn1/DBI-1.636/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/UuZ_cZBWn1/DBI-1.636/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/cnfE7I1CWI/Test-Deep-1.123/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/cnfE7I1CWI/Test-Deep-1.123/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/b1lW6POAcM/DBD-mysql-4.038/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/b1lW6POAcM/DBD-mysql-4.038/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/Lz3bDW24KI/Digest-SHA1-2.13/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/Lz3bDW24KI/Digest-SHA1-2.13/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 95412
PERL5_CPANPLUS_IS_VERSION = 0.9160
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /home/cpan/pit/thr/conf/perl-5.14.3
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /home/cpan/pit/thr/perl-5.14.3/bin/perl
UID: $< = 1001
EUID: $> = 1001
GID: $( = 1001 1001
EGID: $) = 1001 1001
-------------------------------
--
Summary of my perl5 (revision 5 version 14 subversion 3) configuration:
Platform:
osname=gnukfreebsd, osvers=10.1-0-amd64, archname=x86_64-gnukfreebsd-thread-multi
uname='gnukfreebsd kondor 10.1-0-amd64 #0 wed, 16 mar 2016 23:16:33 +0000 x86_64 amd64 qemu virtual cpu version 2.0.0 gnukfreebsd '
config_args='-des -Dprefix=/home/cpan/pit/thr/perl-5.14.3 -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-kfreebsd-gnu /lib/../lib /usr/lib/x86_64-kfreebsd-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -lgdbm -ldl -lm -lcrypt -lutil -lpthread -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=/usr/lib/x86_64-kfreebsd-gnu/libc.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.42
Built under gnukfreebsd
Compiled at May 7 2016 04:03:36
%ENV:
PERL5LIB=":/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/UuZ_cZBWn1/DBI-1.636/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/UuZ_cZBWn1/DBI-1.636/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/cnfE7I1CWI/Test-Deep-1.123/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/cnfE7I1CWI/Test-Deep-1.123/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/b1lW6POAcM/DBD-mysql-4.038/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/b1lW6POAcM/DBD-mysql-4.038/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/Lz3bDW24KI/Digest-SHA1-2.13/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/Lz3bDW24KI/Digest-SHA1-2.13/blib/arch:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib:/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/arch"
PERL5_CPANPLUS_IS_RUNNING="95412"
PERL5_CPANPLUS_IS_VERSION="0.9160"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/home/cpan/pit/thr/conf/perl-5.14.3"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/UuZ_cZBWn1/DBI-1.636/blib/lib
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/UuZ_cZBWn1/DBI-1.636/blib/arch
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/cnfE7I1CWI/Test-Deep-1.123/blib/lib
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/cnfE7I1CWI/Test-Deep-1.123/blib/arch
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/b1lW6POAcM/DBD-mysql-4.038/blib/lib
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/b1lW6POAcM/DBD-mysql-4.038/blib/arch
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/Lz3bDW24KI/Digest-SHA1-2.13/blib/lib
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/Lz3bDW24KI/Digest-SHA1-2.13/blib/arch
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/lib
/home/cpan/pit/thr/conf/perl-5.14.3/.cpanplus/5.14.3/build/oQC6ntlw0d/UMLS-Interface-1.51/blib/arch
/home/cpan/pit/thr/perl-5.14.3/lib/site_perl/5.14.3/x86_64-gnukfreebsd-thread-multi
/home/cpan/pit/thr/perl-5.14.3/lib/site_perl/5.14.3
/home/cpan/pit/thr/perl-5.14.3/lib/5.14.3/x86_64-gnukfreebsd-thread-multi
/home/cpan/pit/thr/perl-5.14.3/lib/5.14.3
.