FASTX-Reader v1.10.0-TRIAL Perl 5 v5.37.7 x86_64-linux
- Status
- Pass
- From
- Slaven Rezić
- Dist
-
FASTX-Reader v1.10.0-TRIAL
- Platform
- Perl 5 v5.37.7 x86_64-linux
- Date
- 2023-01-18 11:32:26
- ID
- c8a423f2-9723-11ed-bc6a-c4e46d8775ea
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andrea Telatin,
This is a computer-generated report for FASTX-Reader-1.10.0-TRIAL
on perl 5.37.7, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/opt/perl-5.37.7/bin/perl5.37.7" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/01_basic_test.t ................. ok
"my" variable $c masks earlier declaration in same scope at t/02_parse_crlf.t line 33.
t/02_parse_crlf.t ................. ok
t/02_parse_fasta.t ................ ok
t/02_preload.t .................... ok
t/02_preload_obj.t ................ ok
t/03_parse_fastq.t ................ ok
Use of uninitialized value in substr at /home/cpansand/.cpan/build/2023011811/FASTX-Reader-1.10.0-0/blib/lib/FASTX/Reader.pm line 27.
t/04_stdin_1.t .................... ok
Use of uninitialized value in substr at /home/cpansand/.cpan/build/2023011811/FASTX-Reader-1.10.0-0/blib/lib/FASTX/Reader.pm line 27.
t/04_stdin_2.t .................... ok
t/05_fasta_comments.t ............. ok
t/06_fastq_comments.t ............. ok
t/07_fastq_parser_1.t ............. ok
t/07_fastq_parser_2.t ............. ok
t/08_gzipped_fastq.t .............. ok
t/08_gzipped_fastq_alternative.t .. ok
t/09_error_nofile.t ............... ok
t/10_error_fastq.t ................ ok
t/11_get_format.t ................. ok
t/12_gzipped_fasta.t .............. ok
t/13_illumina_read.t .............. ok
t/14_illumina_nonillumina.t ....... ok
t/15_parse_pe.t ................... ok
t/16_parse_interleaved.t .......... ok
t/17_parse_pe_autopair.t .......... ok
t/18_parse_pe_bad_names.t ......... ok
t/19_parse_pe_rev.t ............... ok
t/20_parse_pe_bad_interleaved.t ... ok
t/30_helper.t ..................... ok
t/31_helper_fun.t ................. ok
t/40_two_fastas.t ................. ok
t/40_two_files.t .................. ok
t/51_seq_basic_1.t ................ ok
t/51_seq_basic_new.t .............. ok
t/52_methods_seq.t ................ ok
t/53_Seq_asfastx.t ................ ok
t/53_with_fastxseq.t .............. ok
Use of uninitialized value in substr at /home/cpansand/.cpan/build/2023011811/FASTX-Reader-1.10.0-0/blib/lib/FASTX/Seq.pm line 25.
t/54_invalid_seq.t ................ ok
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
t/54_Seq_asfastx_bad.t ............ ok
t/54_Seq_isfastx.t ................ ok
t/55_next.t ....................... ok
t/55_nextobj.t .................... ok
t/55_Seq_slice.t .................. ok
t/61_seq_qual.t ................... ok
t/62_seq_qualities.t .............. ok
t/release-00-pod.t ................ skipped: these tests are for release candidate testing
t/release-01-pod-coverage.t ....... skipped: these tests are for release candidate testing
t/release-03-minimum-standards.t .. skipped: these tests are for release candidate testing
t/release-05-changes.t ............ skipped: these tests are for release candidate testing
t/release-check-version.t ......... skipped: these tests are for release candidate testing
All tests successful.
Files=48, Tests=423, 3 wallclock secs ( 0.10 usr 0.04 sys + 2.13 cusr 0.44 csys = 2.71 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ----- --------
Capture::Tiny 0.40 0.48
Carp 1.2 1.54
Data::Dumper 2.1 2.187
File::Fetch 0 1.04
FindBin 1.3 1.53
JSON::PP 0 4.12
perl 5.012 5.037007
PerlIO::encoding 0 0.30
Time::HiRes 0 1.9772
build_requires:
Module Need Have
------------------- ----- --------
ExtUtils::MakeMaker 0 7.64
configure_requires:
Module Need Have
------------------- ----- --------
ExtUtils::MakeMaker 0 7.64
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 586848
PERL5_CPAN_IS_RUNNING = 586848
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 586745,586848
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2023011811/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2023011811
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.37.7/bin/perl5.37.7
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.34
CPAN::Meta 2.150010
Cwd 3.88
ExtUtils::CBuilder 0.280238
ExtUtils::Command 7.64
ExtUtils::Install 2.20
ExtUtils::MakeMaker 7.64
ExtUtils::Manifest 1.73
ExtUtils::ParseXS 3.49
File::Spec 3.88
JSON 4.10
JSON::PP 4.12
Module::Build 0.4232
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.44
Test::More 1.302191
YAML 1.30
YAML::Syck 1.34
version 0.9929
--
Summary of my perl5 (revision 5 version 37 subversion 7) configuration:
Platform:
osname=linux
osvers=6.0.14-200.fc36.x86_64
archname=x86_64-linux
uname='linux cloud4.bbbike.org 6.0.14-200.fc36.x86_64 #1 smp preempt_dynamic mon dec 19 17:45:48 utc 2022 x86_64 x86_64 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.37.7 -Dusedevel -Dusemallocwrap=no -Dcf_email=srezic@cpan.org'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='12.2.1 20221121 (Red Hat 12.2.1-4)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib /usr/lib64 /usr/local/lib64
libs=-lpthread -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -ldl -lm -lcrypt -lutil -lc
libc=/lib/../lib64/libc.so.6
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.35'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_SIPHASH13
PERL_HASH_USE_SBOX32
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
PERL_USE_SAFE_PUTENV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Jan 1 2023 12:43:10
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="586848"
PERL5_CPAN_IS_RUNNING="586848"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="586745,586848"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2023011811/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/opt/perl-5.37.7/lib/site_perl/5.37.7/x86_64-linux
/opt/perl-5.37.7/lib/site_perl/5.37.7
/opt/perl-5.37.7/lib/5.37.7/x86_64-linux
/opt/perl-5.37.7/lib/5.37.7
.