Proch-N50 v1.7.0 Perl 5 v5.32.1 x86_64-linux
- Status
- Pass
- From
- Slaven Rezić
- Dist
-
Proch-N50 v1.7.0
- Platform
- Perl 5 v5.32.1 x86_64-linux
- Date
- 2025-02-08 08:21:35
- ID
- b5ef4be2-e5f5-11ef-88ee-65f16d8775ea
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andrea Telatin,
This is a computer-generated report for Proch-N50-1.7.0
on perl 5.32.1, created by CPAN-Reporter-1.2020.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/opt/perl-5.32.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/10-Requires_FASTX-reader-seq.t ... ok
t/10_Load_Modules.t ................ ok
t/10_Requires_FASTX-reader.t ....... ok
t/11_calculateN50.t ................ ok
t/11_seqfu.t ....................... ok
# seqfu_version returned: -
t/11_seqfu_ext.t ................... ok
t/12_new_stats.t ................... ok
t/12_stats.t ....................... ok
t/13_json.t ........................ ok
t/14_bad_file.t .................... ok
t/15_bad_json.t .................... ok
t/20_External_Call.t ............... skipped: these tests are for release candidate testing
t/30_Windows.t ..................... ok
# N50 cmd: </opt/perl-5.32.1/bin/perl "/home/cpansand/.cpan/build/2025020808/Proch-N50-1.7.0-1/t/../bin/n50" "/home/cpansand/.cpan/build/2025020808/Proch-N50-1.7.0-1/t/../data/small_test.fa">
# N50 output: <65>
t/49-prebins.t ..................... ok
STDOUT=[1;34mFASTX N50, ver. 4.2.0[0m
[34mPr...[0m
STDERR=OK[0m
TEST=(0)[0m
t/50-n50bin.t ...................... ok
t/author-50-helps.t ................ skipped: these tests are for release candidate testing
t/author-50-n50bin.t ............... skipped: these tests are for release candidate testing
t/author-50-version.t .............. skipped: these tests are for release candidate testing
t/author-51-other-bins.t ........... skipped: these tests are for release candidate testing
t/author-52-cat.t .................. skipped: these tests are for release candidate testing
t/author-52-grep.t ................. skipped: these tests are for release candidate testing
t/author-53-count.t ................ skipped: these tests are for release candidate testing
t/author-54-extract.t .............. skipped: these tests are for release candidate testing
t/author-55-uniq.t ................. skipped: these tests are for release candidate testing
t/author-99_posse.t ................ skipped: these tests are for release candidate testing
t/release-00-pod.t ................. skipped: these tests are for release candidate testing
t/release-01-pod-coverage.t ........ skipped: these tests are for release candidate testing
t/release-03-minimum-standards.t ... skipped: these tests are for release candidate testing
t/release-04-check-cpan-version.t .. skipped: these tests are for release candidate testing
t/release-05-changes-ver.t ......... skipped: these tests are for release candidate testing
t/release-05-changes.t ............. skipped: these tests are for release candidate testing
t/release-06-fastx-reader.t ........ skipped: these tests are for release candidate testing
t/release-19_exec.t ................ skipped: these tests are for release candidate testing
t/release-20_custom.t .............. skipped: these tests are for release candidate testing
t/release-20_stdin.t ............... skipped: these tests are for release candidate testing
t/release-21_bin.t ................. skipped: these tests are for release candidate testing
t/release-22_csv.t ................. skipped: these tests are for release candidate testing
All tests successful.
Files=37, Tests=47, 2 wallclock secs ( 0.13 usr 0.08 sys + 1.54 cusr 0.37 csys = 2.12 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ------ --------
FASTX::Reader v1.8.0 1.12.0
Getopt::Long 2.39 2.58
JSON::PP 2.27 4.16
perl 5.012 5.032001
PerlIO::encoding 0 0.28
Pod::Usage 1.61 2.03
Text::ASCIITable 0 0.22
build_requires:
Module Need Have
------------------- ------ --------
ExtUtils::MakeMaker 0 7.70
configure_requires:
Module Need Have
------------------- ------ --------
ExtUtils::MakeMaker 0 7.70
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = C
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB = /home/cpansand/.local/share/.cpan/build/2025020808/FASTX-Reader-1.12.0-1/blib/arch:/home/cpansand/.local/share/.cpan/build/2025020808/FASTX-Reader-1.12.0-1/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1236670
PERL5_CPAN_IS_RUNNING = 1236670
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1236597,1236670
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2025020808/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2025020808
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.32.1/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.27
CPAN::Meta 2.150010
Cwd 3.78
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.70
ExtUtils::Install 2.22
ExtUtils::MakeMaker 7.70
ExtUtils::Manifest 1.72
ExtUtils::ParseXS 3.40
File::Spec 3.78
JSON 4.10
JSON::PP 4.16
Module::Build 0.4234
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test2 1.302207
Test::Harness 3.50
Test::More 1.302207
YAML 1.31
YAML::Syck 1.34
version 0.9924
--
Summary of my perl5 (revision 5 version 32 subversion 1) configuration:
Platform:
osname=linux
osvers=6.1.0-26-amd64
archname=x86_64-linux
uname='linux cloud5.bbbike.org 6.1.0-26-amd64 #1 smp preempt_dynamic debian 6.1.112-1 (2024-09-30) x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.32.1 -Uinstallusrbinperl -Dcf_email=srezic@cpan.org'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='12.2.0'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /lib64 /usr/lib64
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/x86_64-linux-gnu/libc.so.6
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.36'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Oct 15 2024 05:31:13
%ENV:
PERL5LIB="/home/cpansand/.local/share/.cpan/build/2025020808/FASTX-Reader-1.12.0-1/blib/arch:/home/cpansand/.local/share/.cpan/build/2025020808/FASTX-Reader-1.12.0-1/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="1236670"
PERL5_CPAN_IS_RUNNING="1236670"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1236597,1236670"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2025020808/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/cpansand/.local/share/.cpan/build/2025020808/FASTX-Reader-1.12.0-1/blib/arch
/home/cpansand/.local/share/.cpan/build/2025020808/FASTX-Reader-1.12.0-1/blib/lib
/opt/perl-5.32.1/lib/site_perl/5.32.1/x86_64-linux
/opt/perl-5.32.1/lib/site_perl/5.32.1
/opt/perl-5.32.1/lib/5.32.1/x86_64-linux
/opt/perl-5.32.1/lib/5.32.1
.