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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-Das-Lite-2.11 v5.22.3 GNU/Linux
Date: 2017-02-08T17:11:55Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Roger Pettett,
This is a computer-generated report for Bio-Das-Lite-2.11
on perl 5.22.3, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/00-critic.t ............... skipped: Author test. Set $ENV{TEST_AUTHOR} to a true value to run.
t/00-distribution.t ......... ok
t/00-pod.t .................. ok
t/00-podcoverage.t .......... ok
# Failed test 'feature-by-id element was a hash'
# at t/01-general.t line 52.
# Looks like you failed 1 test of 7.
t/01-general.t ..............
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/7 subtests
# Failed test 'HTTP OK, X-DAS OK (code)'
# at t/02-statuscodes.t line 27.
# got: '404'
# expected: '200'
# Failed test 'HTTP OK, X-DAS OK (message)'
# at t/02-statuscodes.t line 28.
# got: 'Not Found'
# expected: 'OK'
# Failed test 'HTTP OK, X-DAS-Status error (code)'
# at t/02-statuscodes.t line 27.
# got: '404'
# expected: '401'
# Failed test 'HTTP OK, X-DAS-Status error (message)'
# at t/02-statuscodes.t line 28.
# got: 'Not Found'
# expected: 'Bad data source (data source unknown)'
# Looks like you failed 4 tests of 6.
t/02-statuscodes.t ..........
Dubious, test returned 4 (wstat 1024, 0x400)
Failed 4/6 subtests
# Failed test 'dsns call returned OK status (service http://das.sanger.ac.uk/das status 410 Gone)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.sanger.ac.uk/das)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.sanger.ac.uk/das)'
# at t/05-singledsn.t line 41.
# Failed test 'dsns call returned OK status (service http://das.ensembl.org/das/dsn status 410 Gone)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.ensembl.org/das/dsn)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.ensembl.org/das/dsn)'
# at t/05-singledsn.t line 41.
# Failed test 'dsns call returned OK status (service http://das.ensembl.org/das/dsn#foo status 410 Gone)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.ensembl.org/das/dsn#foo)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.ensembl.org/das/dsn#foo)'
# at t/05-singledsn.t line 41.
# Looks like you failed 9 tests of 33.
t/05-singledsn.t ............
Dubious, test returned 9 (wstat 2304, 0x900)
Failed 9/33 subtests
t/06-singledsn-singleseg.t .. ok
# Failed test 'features hash contains an array'
# at t/07-singledsn-multiseg.t line 27.
# got: ''
# expected: 'ARRAY'
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/features?segment=1:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/features?segment=15:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Failed test 'sequence hash contains an array'
# at t/07-singledsn-multiseg.t line 27.
# got: ''
# expected: 'ARRAY'
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/sequence?segment=1:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Failed test 'Unexpected response code: 404 for http://www.ensembl.org/das/Homo_sapiens.NCBI36.reference/sequence?segment=15:1,1000'
# at t/07-singledsn-multiseg.t line 42.
# Looks like you failed 6 tests of 10.
t/07-singledsn-multiseg.t ...
Dubious, test returned 6 (wstat 1536, 0x600)
Failed 6/10 subtests
# Failed test 'dsns call returned OK status (status is 410 Gone)'
# at t/10-multidsn.t line 34.
# Failed test 'dsns call gave a arrayref value for the one key'
# at t/10-multidsn.t line 36.
Can't use an undefined value as an ARRAY reference at t/10-multidsn.t line 38.
# Looks like your test exited with 115 just after 9.
t/10-multidsn.t .............
Dubious, test returned 115 (wstat 29440, 0x7300)
Failed 4/11 subtests
t/20-authentication.t ....... ok
t/21-proxy.t ................ ok
t/40-dna.t .................. ok
t/45-sequence.t ............. ok
t/50-entry_points.t ......... ok
t/60-features.t ............. ok
t/60-features_chunked.t ..... ok
t/60-features_empty.t ....... ok
t/61-features_group.t ....... ok
t/70-alignment.t ............ ok
t/80-structure.t ............ ok
t/90-sources.t .............. ok
Test Summary Report
-------------------
t/01-general.t (Wstat: 256 Tests: 7 Failed: 1)
Failed test: 7
Non-zero exit status: 1
t/02-statuscodes.t (Wstat: 1024 Tests: 6 Failed: 4)
Failed tests: 1-4
Non-zero exit status: 4
t/05-singledsn.t (Wstat: 2304 Tests: 33 Failed: 9)
Failed tests: 8-10, 19-21, 30-32
Non-zero exit status: 9
t/07-singledsn-multiseg.t (Wstat: 1536 Tests: 10 Failed: 6)
Failed tests: 3-5, 8-10
Non-zero exit status: 6
t/10-multidsn.t (Wstat: 29440 Tests: 9 Failed: 2)
Failed tests: 8-9
Non-zero exit status: 115
Parse errors: Bad plan. You planned 11 tests but ran 9.
Files=22, Tests=135, 8 wallclock secs ( 0.17 usr 0.07 sys + 5.76 cusr 1.31 csys = 7.31 CPU)
Result: FAIL
Failed 5/22 test programs. 22/135 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
-------------- ---- --------
Carp 1.02 1.38
English 1.01 1.09
HTTP::Response 1.49 6.11
Readonly 1.03 2.05
WWW::Curl 4.07 4.17
build_requires:
Module Need Have
-------------- ---- --------
Test::More 0.8 1.302075
configure_requires:
Module Need Have
-------------- ---- --------
Module::Build 0.36 0.4220
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 22371
PERL5_CPAN_IS_RUNNING = 22371
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 29160,22371
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1002/2017020800/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
SHELL = /bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1002/2017020800
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.22.3/bin/perl5.22.3
$UID/$EUID = 1002 / 1002
$GID = 1002 1002
$EGID = 1002 1002
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.14
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4220
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.36
Test::More 1.302075
YAML 1.21
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 22 subversion 3) configuration:
Platform:
osname=linux, osvers=4.4.0-59-generic, archname=x86_64-linux
uname='linux prod3.bbbike.org 4.4.0-59-generic #80-ubuntu smp fri jan 6 17:47:47 utc 2017 x86_64 x86_64 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.22.3 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='5.4.0 20160609', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/5/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.23.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.23'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Jan 14 2017 21:01:24
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="22371"
PERL5_CPAN_IS_RUNNING="22371"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="29160,22371"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1002/2017020800/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
@INC:
/opt/perl-5.22.3/lib/site_perl/5.22.3/x86_64-linux
/opt/perl-5.22.3/lib/site_perl/5.22.3
/opt/perl-5.22.3/lib/5.22.3/x86_64-linux
/opt/perl-5.22.3/lib/5.22.3
.