Bio-ToolBox v2.00 Perl 5 v5.16.3 MSWin32-x64-multi-thread

Status
Fail
From
twata
Dist
Bio-ToolBox v2.00
Platform
Perl 5 v5.16.3 MSWin32-x64-multi-thread
Date
2024-07-21 00:09:24
ID
abf6d33d-6f4b-1014-9b81-1e55cb952333
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear Timothy Parnell,

This is a computer-generated report for Bio-ToolBox-2.00
on perl 5.16.3, created by CPAN-Reporter-1.2019.

Thank you for uploading your work to CPAN.  However, there was a problem
testing your distribution.

If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:

http://wiki.cpantesters.org/wiki/CPANAuthorNotes

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from 'C:\Strawberry\perl\bin\perl.exe ./Build test':

t\00.utility.t ......... ok
t\01.Data.t ............ ok
t\02.parser.t .......... ok
t\03.GeneTools.t ....... ok
t\04.DB.t .............. ok
t\05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t\05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t\06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t\06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t\07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t\07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t\08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t\08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t\09.USeq.t ............ ok
Number found where operator expected at t\10.Wiggle.t line 35, near "chromosome	1"
	(Do you need to predeclare chromosome?)
Number found where operator expected at t\10.Wiggle.t line 35, near "1	230218"
	(Missing operator before 	230218?)
Number found where operator expected at t\10.Wiggle.t line 36, near "1	230218"
	(Missing operator before 	230218?)
Semicolon seems to be missing at t\10.Wiggle.t line 36.
syntax error at t\10.Wiggle.t line 35, near "chromosome	1"
syntax error at t\10.Wiggle.t line 35, near "NCBI:"
syntax error at t\10.Wiggle.t line 36, near "1	230218"
syntax error at t\10.Wiggle.t line 38, near "$wigfile
GFF
	"
Bareword "GFF" not allowed while "strict subs" in use at t\10.Wiggle.t line 33.
Execution of t\10.Wiggle.t aborted due to compilation errors.
t\10.Wiggle.t .......... 
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 17/17 subtests 

Test Summary Report
-------------------
t\10.Wiggle.t        (Wstat: 65280 (exited 255) Tests: 0 Failed: 0)
  Non-zero exit status: 255
  Parse errors: Bad plan.  You planned 17 tests but ran 0.
Files=15, Tests=1082,  9 wallclock secs ( 0.22 usr +  0.08 sys =  0.30 CPU)
Result: FAIL
Failed 1/15 test programs. 0/1082 subtests failed.

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                  Need     Have    
    ----------------------- -------- --------
    Bio::Root::Version      1.006924 1.7.8   
    Config::Simple          4.58     4.58    
    File::Which             1.17     1.27    
    Getopt::Long            2.24     2.58    
    IO::Prompt::Tiny        0.003    0.003   
    List::MoreUtils         0.4      0.430   
    List::Util              1.45     1.63    
    Module::Load            0.32     0.36    
    Scalar::Util            1.45     1.63    
    Statistics::Descriptive 3        3.0800  
    Statistics::Lite        3.2      3.62    

build_requires:

    Module                  Need     Have    
    ----------------------- -------- --------
    Test::More              1.302    1.302199
    Test::Warn              0.36     0.37    

configure_requires:

    Module                  Need     Have    
    ----------------------- -------- --------
    Module::Build           0.42     0.42_35 


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    COMSPEC = C:\WINDOWS\system32\cmd.exe
    NONINTERACTIVE_TESTING = 1
    NUMBER_OF_PROCESSORS = 4
    PATH = C:\home\pianokey\perl5\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin
    PERL5LIB = C:\home\pianokey\perl5\lib\perl5
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 11144
    PERL5_CPAN_IS_RUNNING = 11144
    PERL_LOCAL_LIB_ROOT = C:\home\pianokey\perl5
    PERL_MB_OPT = --install_base "C:\\home\\pianokey\\perl5"
    PERL_MM_OPT = INSTALL_BASE=C:\\home\\pianokey\\perl5
    PERL_MM_USE_DEFAULT = 1
    PERL_USE_UNSAFE_INC = 1
    PROCESSOR_IDENTIFIER = Intel64 Family 6 Model 58 Stepping 9, GenuineIntel
    TEMP = C:\Users\USER\AppData\Local\Temp
    TERM = dumb

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = C:\Strawberry\perl\bin\perl.exe
    $UID/$EUID = 0 / 0
    $GID = 0
    $EGID = 0
    Win32::GetOSName = Win8
    Win32::GetOSVersion = , 6, 2, 9200, 2, 0, 0, 256, 1
    Win32::FsType = NTFS
    Win32::IsAdminUser = 0

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.34    
    CPAN::Meta          2.150010
    Cwd                 3.75    
    ExtUtils::CBuilder  0.280236
    ExtUtils::Command   7.71_01 
    ExtUtils::Install   2.22    
    ExtUtils::MakeMaker 7.71_01 
    ExtUtils::Manifest  1.75    
    ExtUtils::ParseXS   3.51    
    File::Spec          3.75    
    JSON                4.10    
    JSON::PP            4.17_01 
    Module::Build       0.42_35 
    Module::Signature   0.88    
    Parse::CPAN::Meta   2.150010
    Test2               1.302199
    Test::Harness       3.49_02 
    Test::More          1.302199
    YAML                1.31    
    YAML::Syck          1.34    
    version             0.9932  


--

Summary of my perl5 (revision 5 version 16 subversion 3) configuration:
   
  Platform:
    osname=MSWin32, osvers=4.0, archname=MSWin32-x64-multi-thread
    uname='Win32 strawberry-perl 5.16.3.1 #1 Tue Mar 12 12:12:07 2013 x64'
    config_args='undef'
    hint=recommended, useposix=true, d_sigaction=undef
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=undef, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc', ccflags =' -s -O2 -DWIN32 -DWIN64 -DCONSERVATIVE  -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fno-strict-aliasing -mms-bitfields',
    optimize='-s -O2',
    cppflags='-DWIN32'
    ccversion='', gccversion='4.6.3', gccosandvers=''
    intsize=4, longsize=4, ptrsize=8, doublesize=8, byteorder=12345678
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='g++', ldflags ='-s -L"C:\Strawberry\perl\lib\CORE" -L"C:\Strawberry\c\lib"'
    libpth=C:\Strawberry\c\lib C:\Strawberry\c\x86_64-w64-mingw32\lib
    libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
    perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
    libc=, so=dll, useshrplib=true, libperl=libperl516.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
    cccdlflags=' ', lddlflags='-mdll -s -L"C:\Strawberry\perl\lib\CORE" -L"C:\Strawberry\c\lib"'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
                        PERLIO_LAYERS PERL_DONT_CREATE_GVSV
                        PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
                        PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PL_OP_SLAB_ALLOC
                        USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
                        USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
                        USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
  Built under MSWin32
  Compiled at Mar 12 2013 12:16:40
  %ENV:
    PERL5LIB="C:\home\pianokey\perl5\lib\perl5"
    PERL5_CPANPLUS_IS_RUNNING="11144"
    PERL5_CPAN_IS_RUNNING="11144"
    PERL_LOCAL_LIB_ROOT="C:\home\pianokey\perl5"
    PERL_MB_OPT="--install_base "C:\\home\\pianokey\\perl5""
    PERL_MM_OPT="INSTALL_BASE=C:\\home\\pianokey\\perl5"
    PERL_MM_USE_DEFAULT="1"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    C:\home\pianokey\perl5\lib\perl5/MSWin32-x64-multi-thread
    C:\home\pianokey\perl5\lib\perl5
    C:/Strawberry/perl/site/lib
    C:/Strawberry/perl/vendor/lib
    C:/Strawberry/perl/lib
    .