Bio-ToolBox v2.00 Perl 5 v5.16.3 MSWin32-x64-multi-thread
- Status
- Fail
- From
- twata
- Dist
-
Bio-ToolBox v2.00
- Platform
- Perl 5 v5.16.3 MSWin32-x64-multi-thread
- Date
- 2024-07-21 00:09:24
- ID
- abf6d33d-6f4b-1014-9b81-1e55cb952333
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-2.00
on perl 5.16.3, created by CPAN-Reporter-1.2019.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\Strawberry\perl\bin\perl.exe ./Build test':
t\00.utility.t ......... ok
t\01.Data.t ............ ok
t\02.parser.t .......... ok
t\03.GeneTools.t ....... ok
t\04.DB.t .............. ok
t\05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t\05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t\06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t\06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t\07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t\07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t\08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t\08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t\09.USeq.t ............ ok
Number found where operator expected at t\10.Wiggle.t line 35, near "chromosome 1"
(Do you need to predeclare chromosome?)
Number found where operator expected at t\10.Wiggle.t line 35, near "1 230218"
(Missing operator before 230218?)
Number found where operator expected at t\10.Wiggle.t line 36, near "1 230218"
(Missing operator before 230218?)
Semicolon seems to be missing at t\10.Wiggle.t line 36.
syntax error at t\10.Wiggle.t line 35, near "chromosome 1"
syntax error at t\10.Wiggle.t line 35, near "NCBI:"
syntax error at t\10.Wiggle.t line 36, near "1 230218"
syntax error at t\10.Wiggle.t line 38, near "$wigfile
GFF
"
Bareword "GFF" not allowed while "strict subs" in use at t\10.Wiggle.t line 33.
Execution of t\10.Wiggle.t aborted due to compilation errors.
t\10.Wiggle.t ..........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 17/17 subtests
Test Summary Report
-------------------
t\10.Wiggle.t (Wstat: 65280 (exited 255) Tests: 0 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 17 tests but ran 0.
Files=15, Tests=1082, 9 wallclock secs ( 0.22 usr + 0.08 sys = 0.30 CPU)
Result: FAIL
Failed 1/15 test programs. 0/1082 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- -------- --------
Bio::Root::Version 1.006924 1.7.8
Config::Simple 4.58 4.58
File::Which 1.17 1.27
Getopt::Long 2.24 2.58
IO::Prompt::Tiny 0.003 0.003
List::MoreUtils 0.4 0.430
List::Util 1.45 1.63
Module::Load 0.32 0.36
Scalar::Util 1.45 1.63
Statistics::Descriptive 3 3.0800
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- -------- --------
Test::More 1.302 1.302199
Test::Warn 0.36 0.37
configure_requires:
Module Need Have
----------------------- -------- --------
Module::Build 0.42 0.42_35
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
COMSPEC = C:\WINDOWS\system32\cmd.exe
NONINTERACTIVE_TESTING = 1
NUMBER_OF_PROCESSORS = 4
PATH = C:\home\pianokey\perl5\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Strawberry\c\bin;C:\Strawberry\perl\site\bin;C:\Strawberry\perl\bin
PERL5LIB = C:\home\pianokey\perl5\lib\perl5
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 11144
PERL5_CPAN_IS_RUNNING = 11144
PERL_LOCAL_LIB_ROOT = C:\home\pianokey\perl5
PERL_MB_OPT = --install_base "C:\\home\\pianokey\\perl5"
PERL_MM_OPT = INSTALL_BASE=C:\\home\\pianokey\\perl5
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
PROCESSOR_IDENTIFIER = Intel64 Family 6 Model 58 Stepping 9, GenuineIntel
TEMP = C:\Users\USER\AppData\Local\Temp
TERM = dumb
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\Strawberry\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = Win8
Win32::GetOSVersion = , 6, 2, 9200, 2, 0, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 0
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.34
CPAN::Meta 2.150010
Cwd 3.75
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.71_01
ExtUtils::Install 2.22
ExtUtils::MakeMaker 7.71_01
ExtUtils::Manifest 1.75
ExtUtils::ParseXS 3.51
File::Spec 3.75
JSON 4.10
JSON::PP 4.17_01
Module::Build 0.42_35
Module::Signature 0.88
Parse::CPAN::Meta 2.150010
Test2 1.302199
Test::Harness 3.49_02
Test::More 1.302199
YAML 1.31
YAML::Syck 1.34
version 0.9932
--
Summary of my perl5 (revision 5 version 16 subversion 3) configuration:
Platform:
osname=MSWin32, osvers=4.0, archname=MSWin32-x64-multi-thread
uname='Win32 strawberry-perl 5.16.3.1 #1 Tue Mar 12 12:12:07 2013 x64'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DWIN64 -DCONSERVATIVE -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fno-strict-aliasing -mms-bitfields',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.6.3', gccosandvers=''
intsize=4, longsize=4, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\Strawberry\perl\lib\CORE" -L"C:\Strawberry\c\lib"'
libpth=C:\Strawberry\c\lib C:\Strawberry\c\x86_64-w64-mingw32\lib
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl516.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\Strawberry\perl\lib\CORE" -L"C:\Strawberry\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PL_OP_SLAB_ALLOC
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under MSWin32
Compiled at Mar 12 2013 12:16:40
%ENV:
PERL5LIB="C:\home\pianokey\perl5\lib\perl5"
PERL5_CPANPLUS_IS_RUNNING="11144"
PERL5_CPAN_IS_RUNNING="11144"
PERL_LOCAL_LIB_ROOT="C:\home\pianokey\perl5"
PERL_MB_OPT="--install_base "C:\\home\\pianokey\\perl5""
PERL_MM_OPT="INSTALL_BASE=C:\\home\\pianokey\\perl5"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
C:\home\pianokey\perl5\lib\perl5/MSWin32-x64-multi-thread
C:\home\pianokey\perl5\lib\perl5
C:/Strawberry/perl/site/lib
C:/Strawberry/perl/vendor/lib
C:/Strawberry/perl/lib
.