Bio-ToolBox v1.64 Perl 5 v5.14.4 x86_64-linux-thread-multi
- Status
- Pass
- From
- David Cantrell (DCANTRELL)
- Dist
-
Bio-ToolBox v1.64
- Platform
- Perl 5 v5.14.4 x86_64-linux-thread-multi
- Date
- 2019-01-04 15:51:54
- ID
- a8c94a7e-1038-11e9-a31f-91027347484a
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-1.64
on perl 5.14.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/01.Data.t ............ ok
t/02.parser.t .......... ok
t/03.GeneTools.t ....... ok
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w- <-- HERE \.]+):([\w-\.]*)$/ at /home/david/cpantesting/perl-5.14.4/lib/site_perl/5.14.4/Bio/DB/GFF/Typename.pm line 55.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w-\.]+):([\w- <-- HERE \.]*)$/ at /home/david/cpantesting/perl-5.14.4/lib/site_perl/5.14.4/Bio/DB/GFF/Typename.pm line 55.
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at /home/david/cpantesting/perl-5.14.4/lib/site_perl/5.14.4/Bio/DB/IndexedBase.pm line 304.
t/04.DB.t .............. ok
t/05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t/05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t/06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t/06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t/07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t/07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t/08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t/08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t/09.USeq.t ............ ok
t/10.Wiggle.t .......... skipped: Optional module Bio::Graphics not available
All tests successful.
Files=14, Tests=954, 3 wallclock secs ( 0.09 usr 0.07 sys + 0.88 cusr 0.14 csys = 1.18 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- --------- --------
Bio::Root::Version 1.0069023 1.007002
Config::Simple 4.58 4.58
File::Which 0 1.21
Getopt::Long 2.24 2.38
List::Util 0 1.23
Module::Load 0 0.32
Statistics::Descriptive 3 3.0702
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- --------- --------
Test::More 0 1.302059
configure_requires:
Module Need Have
----------------------- --------- --------
Module::Build 0 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL = 5.14.4
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 17604
PERL5_CPAN_IS_RUNNING = 17604
PERLVER = 5.14.4
PERL_INLINE_DIRECTORY = /home/david/.Inline-5.14.4
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 0
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/david/cpantesting/perl-5.14.4/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 1000
$EGID = 1000 1000
Perl module toolchain versions installed:
Module Have
------------------- ---------
CPAN 1.9600_01
CPAN::Meta 2.150010
Cwd 3.36
ExtUtils::CBuilder 0.280203
ExtUtils::Command 1.17
ExtUtils::Install 1.56
ExtUtils::MakeMaker 6.59
ExtUtils::Manifest 1.58
ExtUtils::ParseXS 2.2210
File::Spec 3.33
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302059
YAML 1.18
YAML::Syck n/a
version 0.88
--
Summary of my perl5 (revision 5 version 14 subversion 4) configuration:
Platform:
osname=linux, osvers=3.16.0-4-amd64, archname=x86_64-linux-thread-multi
uname='linux pigsty.barnyard.co.uk 3.16.0-4-amd64 #1 smp debian 3.16.36-1+deb8u1 (2016-09-03) x86_64 gnulinux '
config_args='-de -Duse64bitall -Dusethreads -Dprefix=/home/david/cpantesting/perl-5.14.4'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_ITHREADS USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.44
Built under linux
Compiled at Oct 12 2016 15:07:52
%ENV:
PERL="5.14.4"
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="17604"
PERL5_CPAN_IS_RUNNING="17604"
PERLVER="5.14.4"
PERL_INLINE_DIRECTORY="/home/david/.Inline-5.14.4"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="0"
@INC:
/home/david/cpantesting/perl-5.14.4/lib/site_perl/5.14.4/x86_64-linux-thread-multi
/home/david/cpantesting/perl-5.14.4/lib/site_perl/5.14.4
/home/david/cpantesting/perl-5.14.4/lib/5.14.4/x86_64-linux-thread-multi
/home/david/cpantesting/perl-5.14.4/lib/5.14.4
.