Bio-ToolBox v1.68 Perl 5 v5.12.2 MSWin32-x86-multi-thread
- Status
- Pass
- From
- Alexandr Ciornii (CHORNY)
- Dist
-
Bio-ToolBox v1.68
- Platform
- Perl 5 v5.12.2 MSWin32-x86-multi-thread
- Date
- 2021-01-25 15:02:01
- ID
- a018c827-6bf8-1014-affd-8170f75015eb
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-1.68
on perl 5.12.2, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\strawberry\perl\bin\perl.exe ./Build test':
No Strand column to update! at t\01.Data.t line 285.
No Type column to update! at t\01.Data.t line 290.
t\01.Data.t ............ ok
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 682.
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 762.
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 825.
Unable to update Start coordinate for parsed SeqFeature objects at t\02.parser.t line 876.
t\02.parser.t .......... ok
t\03.GeneTools.t ....... ok
Use of uninitialized value $_[0] in string eq at C:/strawberry/perl/lib/File/Spec/Win32.pm line 153.
t\04.DB.t .............. ok
t\05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t\05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t\06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t\06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t\07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t\07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t\08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t\08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t\09.USeq.t ............ skipped: Optional module Bio::DB::USeq not available
t\10.Wiggle.t .......... skipped: Optional module Bio::Graphics not available
All tests successful.
Files=14, Tests=977, 3 wallclock secs ( 0.24 usr + 0.03 sys = 0.27 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- ---- --------
Bio::Root::Root 0 0
Config::Simple 4.58 4.58
File::Which 0 1.09
Getopt::Long 2.24 2.42
List::MoreUtils 0 0.33
List::Util 0 1.39
Module::Load 0 0.32
Statistics::Descriptive 3 3.0800
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- ---- --------
Test::More 0 1.001003
configure_requires:
Module Need Have
----------------------- ---- --------
Module::Build 0 0.4206
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = c:\Windows\system32;c:\Windows\System32\Wbem;C:\Git\cmd;C:\strawberry\c\bin;C:\strawberry\perl\site\bin;C:\strawberry\perl\bin
PERL5LIB = C:\strawberry\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\strawberry\cpan\build\Statistics-Lite-3.62-0/blib/lib;C:\strawberry\cpan\build\Statistics-Descriptive-3.0800-0/blib/arch;C:\strawberry\cpan\build\Statistics-Descriptive-3.0800-0/blib/lib;C:\strawberry\cpan\build\Config-Simple-4.58-0/blib/arch;C:\strawberry\cpan\build\Config-Simple-4.58-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1776
PERL5_CPAN_IS_RUNNING = 1776
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1720,1776
PERL_CR_SMOKER_CURRENT = Bio-ToolBox-1.68
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PROCESSOR_IDENTIFIER = x86 Family 18 Model 1 Stepping 0, AuthenticAMD
TEMP = C:\DOCUME~1\c\LOCALS~1\Temp
TERM = dumb
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\strawberry\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.141520
Cwd 3.47
ExtUtils::CBuilder 0.280216
ExtUtils::Command 1.16
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.98
ExtUtils::Manifest 1.60
ExtUtils::ParseXS 3.24
File::Spec 3.47
JSON 2.90
JSON::PP 2.27203
Module::Build 0.4206
Module::Signature 0.66
Parse::CPAN::Meta 1.4414
Test::Harness 3.32
Test::More 1.001003
YAML 0.98
YAML::Syck 1.27
version 0.9908
--
Summary of my perl5 (revision 5 version 12 subversion 2) configuration:
Platform:
osname=MSWin32, osvers=5.1, archname=MSWin32-x86-multi-thread
uname='Win32 strawberryperl 5.12.2.0 #1 Fri Nov 5 05:17:27 2010 i386'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DHAVE_DES_FCRYPT -DUSE_SITECUSTOMIZE -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fno-strict-aliasing -mms-bitfields -DPERL_MSVCRT_READFIX',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.4.3', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=undef, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\strawberry\perl\lib\CORE" -L"C:\strawberry\c\lib"'
libpth=C:\strawberry\c\lib C:\strawberry\c\i686-w64-mingw32\lib
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl512.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\strawberry\perl\lib\CORE" -L"C:\strawberry\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PL_OP_SLAB_ALLOC USE_ITHREADS
USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
USE_SITECUSTOMIZE
Built under MSWin32
Compiled at Nov 5 2010 08:39:08
%ENV:
PERL5LIB="C:\strawberry\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\strawberry\cpan\build\Statistics-Lite-3.62-0/blib/lib;C:\strawberry\cpan\build\Statistics-Descriptive-3.0800-0/blib/arch;C:\strawberry\cpan\build\Statistics-Descriptive-3.0800-0/blib/lib;C:\strawberry\cpan\build\Config-Simple-4.58-0/blib/arch;C:\strawberry\cpan\build\Config-Simple-4.58-0/blib/lib"
PERL5_CPANPLUS_IS_RUNNING="1776"
PERL5_CPAN_IS_RUNNING="1776"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1720,1776"
PERL_CR_SMOKER_CURRENT="Bio-ToolBox-1.68"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
C:\strawberry\cpan\build\Statistics-Lite-3.62-0/blib/arch
C:\strawberry\cpan\build\Statistics-Lite-3.62-0/blib/lib
C:\strawberry\cpan\build\Statistics-Descriptive-3.0800-0/blib/arch
C:\strawberry\cpan\build\Statistics-Descriptive-3.0800-0/blib/lib
C:\strawberry\cpan\build\Config-Simple-4.58-0/blib/arch
C:\strawberry\cpan\build\Config-Simple-4.58-0/blib/lib
C:/strawberry/perl/site/lib
C:/strawberry/perl/vendor/lib
C:/strawberry/perl/lib
.