FASTX-Reader v1.12.1-TRIAL Perl 5 v5.24.0 x86_64-linux
- Status
- Pass
- From
- Slaven Rezić
- Dist
-
FASTX-Reader v1.12.1-TRIAL
- Platform
- Perl 5 v5.24.0 x86_64-linux
- Date
- 2023-09-28 13:32:39
- ID
- 7e9f3ce0-5e03-11ee-b18c-e7366e8775ea
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andrea Telatin,
This is a computer-generated report for FASTX-Reader-1.12.1-TRIAL
on perl 5.24.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/opt/perl-5.24.0/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/01_basic_test.t ................. ok
t/02_parse_crlf.t ................. ok
t/02_parse_fasta.t ................ ok
t/02_preload.t .................... ok
t/02_preload_obj.t ................ ok
t/03_parse_fastq.t ................ ok
t/04_stdin_1.t .................... ok
t/04_stdin_2.t .................... ok
t/05_fasta_comments.t ............. ok
t/06_fastq_comments.t ............. ok
t/07_fastq_parser_1.t ............. ok
t/07_fastq_parser_2.t ............. ok
t/08_gzipped_fastq.t .............. ok
t/08_gzipped_fastq_alternative.t .. ok
t/09_error_nofile.t ............... ok
t/10_error_fastq.t ................ ok
t/11_get_format.t ................. ok
t/12_gzipped_fasta.t .............. ok
t/13_illumina_read.t .............. ok
t/14_illumina_nonillumina.t ....... ok
t/15_parse_pe.t ................... ok
t/16_parse_interleaved.t .......... ok
t/17_parse_pe_autopair.t .......... ok
t/18_parse_pe_bad_names.t ......... ok
t/19_parse_pe_rev.t ............... ok
t/20_parse_pe_bad_interleaved.t ... ok
t/30_helper.t ..................... ok
t/31_helper_fun.t ................. ok
t/40_two_fastas.t ................. ok
t/40_two_files.t .................. ok
t/51_seq_basic_1.t ................ ok
t/51_seq_basic_new.t .............. ok
t/52_methods_seq.t ................ ok
t/53_Seq_asfastx.t ................ ok
t/53_with_fastxseq.t .............. ok
t/54_copy.t ....................... ok
t/54_invalid_seq.t ................ ok
t/54_Seq_asfastx_bad.t ............ ok
t/54_Seq_isfastx.t ................ ok
t/55_next.t ....................... ok
t/55_nextobj.t .................... ok
t/55_Seq_slice.t .................. ok
t/56_Seq_flags.t .................. ok
t/57_Seq_Trans.t .................. ok
t/61_seq_qual.t ................... ok
t/62_seq_qualities.t .............. ok
t/release-00-pod.t ................ skipped: these tests are for release candidate testing
t/release-01-pod-coverage.t ....... skipped: these tests are for release candidate testing
t/release-03-minimum-standards.t .. skipped: these tests are for release candidate testing
t/release-05-changes.t ............ skipped: these tests are for release candidate testing
t/release-check-version.t ......... skipped: these tests are for release candidate testing
All tests successful.
Files=51, Tests=444, 2 wallclock secs ( 0.08 usr 0.02 sys + 1.38 cusr 0.47 csys = 1.95 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ----- --------
Capture::Tiny 0.40 0.44
Carp 1.2 1.40
Data::Dumper 2.1 2.161
File::Fetch 0 0.50
FindBin 1.3 1.51
JSON::PP 0 2.27300
perl 5.016 5.024000
PerlIO::encoding 0 0.24
Time::HiRes 0 1.9739
build_requires:
Module Need Have
------------------- ----- --------
ExtUtils::MakeMaker 0 7.24
configure_requires:
Module Need Have
------------------- ----- --------
ExtUtils::MakeMaker 0 7.24
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
LANGUAGE = en_US:en
LC_ALL = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 20852
PERL5_CPAN_IS_RUNNING = 20852
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 5273,20852
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2023092815/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2023092815
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.24.0/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.28
CPAN::Meta 2.150010
Cwd 3.63
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.31
File::Spec 3.63
JSON 2.90
JSON::PP 2.27300
Module::Build 0.4220
Module::Signature 0.80
Parse::CPAN::Meta 2.150010
Test::Harness 3.36
Test::More 1.302052
YAML 1.17
YAML::Syck 1.29
version 0.9916
--
Summary of my perl5 (revision 5 version 24 subversion 0) configuration:
Platform:
osname=linux, osvers=3.2.0-4-amd64, archname=x86_64-linux
uname='linux cvrsnica-wheezy 3.2.0-4-amd64 #1 smp debian 3.2.54-2 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.24.0 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.7.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.13.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at May 30 2016 08:43:25
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="20852"
PERL5_CPAN_IS_RUNNING="20852"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="5273,20852"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2023092815/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/opt/perl-5.24.0/lib/site_perl/5.24.0/x86_64-linux
/opt/perl-5.24.0/lib/site_perl/5.24.0
/opt/perl-5.24.0/lib/5.24.0/x86_64-linux
/opt/perl-5.24.0/lib/5.24.0
.