Bio-ToolBox v1.64 Perl 5 v5.24.0 x86_64-linux
- Status
- Pass
- From
- Slaven Rezić (SREZIC)
- Dist
-
Bio-ToolBox v1.64
- Platform
- Perl 5 v5.24.0 x86_64-linux
- Date
- 2019-01-02 19:56:23
- ID
- 7b33d762-0ec8-11e9-ab8d-a9716fc07bc1
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-1.64
on perl 5.24.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/01.Data.t ............ ok
t/02.parser.t .......... ok
t/03.GeneTools.t ....... ok
Possible precedence issue with control flow operator at /opt/perl-5.24.0/lib/site_perl/5.24.0/Bio/DB/IndexedBase.pm line 839.
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at /opt/perl-5.24.0/lib/5.24.0/x86_64-linux/DynaLoader.pm line 210.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w- <-- HERE \.]+):([\w-\.]*)$/ at /opt/perl-5.24.0/lib/site_perl/5.24.0/Bio/DB/GFF/Typename.pm line 55.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w-\.]+):([\w- <-- HERE \.]*)$/ at /opt/perl-5.24.0/lib/site_perl/5.24.0/Bio/DB/GFF/Typename.pm line 55.
t/04.DB.t .............. ok
t/05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t/05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t/06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t/06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t/07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t/07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t/08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t/08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t/09.USeq.t ............ ok
Possible precedence issue with control flow operator at /opt/perl-5.24.0/lib/site_perl/5.24.0/Bio/DB/IndexedBase.pm line 839.
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at /opt/perl-5.24.0/lib/5.24.0/x86_64-linux/DynaLoader.pm line 210.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w- <-- HERE \.]+):([\w-\.]*)$/ at /opt/perl-5.24.0/lib/site_perl/5.24.0/Bio/DB/GFF/Typename.pm line 55.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w-\.]+):([\w- <-- HERE \.]*)$/ at /opt/perl-5.24.0/lib/site_perl/5.24.0/Bio/DB/GFF/Typename.pm line 55.
t/10.Wiggle.t .......... ok
All tests successful.
Files=14, Tests=971, 2 wallclock secs ( 0.05 usr 0.06 sys + 1.52 cusr 0.37 csys = 2.00 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- --------- --------
Bio::Root::Version 1.0069023 1.007001
Config::Simple 4.58 4.58
File::Which 0 1.22
Getopt::Long 2.24 2.5
List::Util 0 1.50
Module::Load 0 0.32
Statistics::Descriptive 3 3.0701
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- --------- --------
Test::More 0 1.302140
configure_requires:
Module Need Have
----------------------- --------- --------
Module::Build 0 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB = /home/cpansand/.cpan/build/2019010219/Data-TableReader-0.009-5/blib/arch:/home/cpansand/.cpan/build/2019010219/Data-TableReader-0.009-5/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 4397
PERL5_CPAN_IS_RUNNING = 4397
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 2079,4397
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2019010219/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1023/2019010219
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.24.0/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.22
CPAN::Meta 2.150010
Cwd 3.75
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.71
ExtUtils::ParseXS 3.31
File::Spec 3.75
JSON 4.00
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature 0.83
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302140
YAML 1.26
YAML::Syck 1.31
version 0.9923
--
Summary of my perl5 (revision 5 version 24 subversion 0) configuration:
Platform:
osname=linux, osvers=2.6.32-696.3.1.el6.x86_64, archname=x86_64-linux
uname='linux centos6 2.6.32-696.3.1.el6.x86_64 #1 smp tue may 30 19:52:55 utc 2017 x86_64 x86_64 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.24.0 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2',
optimize='-O2',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.4.7 20120313 (Red Hat 4.4.7-18)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib /lib/../lib64 /usr/lib/../lib64 /lib /lib64 /usr/lib64 /usr/local/lib64
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.12.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.12'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at Jun 20 2017 21:17:18
%ENV:
PERL5LIB="/home/cpansand/.cpan/build/2019010219/Data-TableReader-0.009-5/blib/arch:/home/cpansand/.cpan/build/2019010219/Data-TableReader-0.009-5/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="4397"
PERL5_CPAN_IS_RUNNING="4397"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="2079,4397"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2019010219/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/cpansand/.cpan/build/2019010219/Data-TableReader-0.009-5/blib/arch
/home/cpansand/.cpan/build/2019010219/Data-TableReader-0.009-5/blib/lib
/opt/perl-5.24.0/lib/site_perl/5.24.0/x86_64-linux
/opt/perl-5.24.0/lib/site_perl/5.24.0
/opt/perl-5.24.0/lib/5.24.0/x86_64-linux
/opt/perl-5.24.0/lib/5.24.0
.