Bio-ToolBox v1.64 Perl 5 v5.16.0 MSWin32-x86-multi-thread
- Status
- Pass
- From
- Alexandr Ciornii (CHORNY)
- Dist
-
Bio-ToolBox v1.64
- Platform
- Perl 5 v5.16.0 MSWin32-x86-multi-thread
- Date
- 2019-01-02 20:14:18
- ID
- 739cb24e-6c0e-1014-880b-dd788adcd3e3
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-1.64
on perl 5.16.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\strawberry160\perl\bin\perl.exe ./Build test':
t\01.Data.t ............ ok
t\02.parser.t .......... ok
t\03.GeneTools.t ....... ok
Use of uninitialized value $_[0] in string eq at C:/strawberry160/perl/lib/File/Spec/Win32.pm line 152.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w- <-- HERE \.]+):([\w-\.]*)$/ at C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/lib/Bio/DB/GFF/Typename.pm line 55.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w-\.]+):([\w- <-- HERE \.]*)$/ at C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/lib/Bio/DB/GFF/Typename.pm line 55.
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at C:/strawberry160/perl/lib/DynaLoader.pm line 213.
t\04.DB.t .............. ok
t\05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t\05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t\06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t\06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t\07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t\07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t\08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t\08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t\09.USeq.t ............ skipped: Optional module Bio::DB::USeq not available
t\10.Wiggle.t .......... skipped: Optional module Bio::Graphics not available
All tests successful.
Files=14, Tests=918, 10 wallclock secs ( 0.22 usr + 0.04 sys = 0.26 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- --------- --------
Bio::Root::Version 1.0069023 1.007002
Config::Simple 4.58 4.58
File::Which 0 1.09
Getopt::Long 2.24 2.42
List::Util 0 1.35
Module::Load 0 0.22
Statistics::Descriptive 3 3.0605
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- --------- --------
Test::More 0 1.001002
configure_requires:
Module Need Have
----------------------- --------- --------
Module::Build 0 0.4203
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\strawberry160\c\bin;C:\strawberry160\perl\site\bin;C:\strawberry160\perl\bin
PERL5LIB = C:\strawberry160\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\strawberry160\cpan\build\Statistics-Lite-3.62-0/blib/lib;C:\strawberry160\cpan\build\Config-Simple-4.58-0/blib/arch;C:\strawberry160\cpan\build\Config-Simple-4.58-0/blib/lib;C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/arch;C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 27440
PERL5_CPAN_IS_RUNNING = 27440
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1132,27440
PERL_CR_SMOKER_CURRENT = Bio-ToolBox-1.64
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_JSON_BACKEND = JSON::XS
PERL_MM_USE_DEFAULT = 1
PERL_YAML_BACKEND = YAML
PROCESSOR_IDENTIFIER = x86 Family 18 Model 1 Stepping 0, AuthenticAMD
TEMP = C:\DOCUME~1\a\LOCALS~1\Temp
TERM = dumb
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\strawberry160\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.133380
Cwd 3.40
ExtUtils::CBuilder 0.280206
ExtUtils::Command 1.17
ExtUtils::Install 1.58
ExtUtils::MakeMaker 6.84
ExtUtils::Manifest 1.61
ExtUtils::ParseXS 3.22
File::Spec 3.40
JSON 2.53
JSON::PP 2.27203
Module::Build 0.4203
Module::Signature 0.68
Parse::CPAN::Meta 1.4405
Test::Harness 3.30
Test::More 1.001002
YAML 0.88
YAML::Syck 1.27
version 0.9904
--
Summary of my perl5 (revision 5 version 16 subversion 0) configuration:
Platform:
osname=MSWin32, osvers=4.0, archname=MSWin32-x86-multi-thread
uname='Win32 strawberry-perl 5.16.0.1 #1 Mon May 21 22:07:30 2012 i386'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fno-strict-aliasing -mms-bitfields',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.6.3', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=undef, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\strawberry160\perl\lib\CORE" -L"C:\strawberry160\c\lib"'
libpth=C:\strawberry160\c\lib C:\strawberry160\c\i686-w64-mingw32\lib
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl516.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\strawberry160\perl\lib\CORE" -L"C:\strawberry160\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PL_OP_SLAB_ALLOC
USE_ITHREADS USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under MSWin32
Compiled at May 21 2012 22:15:38
%ENV:
PERL5LIB="C:\strawberry160\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\strawberry160\cpan\build\Statistics-Lite-3.62-0/blib/lib;C:\strawberry160\cpan\build\Config-Simple-4.58-0/blib/arch;C:\strawberry160\cpan\build\Config-Simple-4.58-0/blib/lib;C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/arch;C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/lib"
PERL5_CPANPLUS_IS_RUNNING="27440"
PERL5_CPAN_IS_RUNNING="27440"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1132,27440"
PERL_CR_SMOKER_CURRENT="Bio-ToolBox-1.64"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_JSON_BACKEND="JSON::XS"
PERL_MM_USE_DEFAULT="1"
PERL_YAML_BACKEND="YAML"
@INC:
C:\strawberry160\cpan\build\Statistics-Lite-3.62-0/blib/arch
C:\strawberry160\cpan\build\Statistics-Lite-3.62-0/blib/lib
C:\strawberry160\cpan\build\Config-Simple-4.58-0/blib/arch
C:\strawberry160\cpan\build\Config-Simple-4.58-0/blib/lib
C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/arch
C:\strawberry160\cpan\build\BioPerl-1.007002-0/blib/lib
C:/strawberry160/perl/site/lib/MSWin32-x86-multi-thread
C:/strawberry160/perl/site/lib
C:/strawberry160/perl/vendor/lib
C:/strawberry160/perl/lib
.