Bio_AssemblyImprovement v1.160490 Perl 5 v5.28.0 RC1 MSWin32-x86-multi-thread-64int
- Status
- Fail
- From
- Alexandr Ciornii (CHORNY)
- Dist
-
Bio_AssemblyImprovement v1.160490
- Platform
- Perl 5 v5.28.0 RC1 MSWin32-x86-multi-thread-64int
- Date
- 2018-06-18 08:53:45
- ID
- 71d3330e-6c48-1014-ad93-1b78f124ce4e
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andrew Page,
This is a computer-generated report for Bio_AssemblyImprovement-1.160490
on perl 5.28.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\STRAWB~1\c\bin\gmake.exe test':
"C:\Strawberry280RC1\perl\bin\perl.exe" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib\lib', 'blib\arch')" t/*.t t/Abacas/*.t t/AdapterRemoval/Trimmomatic/*.t t/Assemble/SGA/*.t t/Circlator/*.t t/DigitalNormalisation/Khmer/*.t t/FillGaps/*.t t/IvaQC/*.t t/Overall/*.t t/PrepareForSubmission/*.t t/PrimerRemoval/*.t t/Quiver/*.t t/Scaffold/*.t t/Util/*.t t/Validate/*.t
Useless use of concatenation (.) or string in void context at lib/Bio/AssemblyImprovement/Abacas/Main.pm line 33.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Could not read file 'C:\STRAWB~1\cpan\build\Bio_AssemblyImprovement-1.160490-0\dH2sCWnH1S/contigs.fa_my_reference.fa.fasta': No such file or directory
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry280RC1/perl/site/lib/Bio/Root/Root.pm:447
STACK: Bio::Root::IO::_initialize_io C:/Strawberry280RC1/perl/site/lib/Bio/Root/IO.pm:268
STACK: Bio::SeqIO::_initialize C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:513
STACK: Bio::SeqIO::fasta::_initialize C:/Strawberry280RC1/perl/site/lib/Bio\SeqIO\fasta.pm:87
STACK: Bio::SeqIO::new C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:389
STACK: Bio::SeqIO::new C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:435
STACK: Bio::AssemblyImprovement::Abacas::DelimiterRole::_split_sequence_on_delimiter lib/Bio/AssemblyImprovement/Abacas/DelimiterRole.pm:70
STACK: Bio::AssemblyImprovement::Abacas::Main::run lib/Bio/AssemblyImprovement/Abacas/Main.pm:73
STACK: Bio::AssemblyImprovement::Abacas::Iterative::_run_abacas lib/Bio/AssemblyImprovement/Abacas/Iterative.pm:74
STACK: Bio::AssemblyImprovement::Abacas::Iterative::run lib/Bio/AssemblyImprovement/Abacas/Iterative.pm:46
STACK: t/Abacas/Iterative.t:24
-----------------------------------------------------------
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/Abacas/Iterative.t ....................
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
Useless use of concatenation (.) or string in void context at lib/Bio/AssemblyImprovement/Abacas/Main.pm line 33.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Could not read file 'C:\STRAWB~1\cpan\build\Bio_AssemblyImprovement-1.160490-0\J_hg2rEH_e/contigs.fa_my_reference.fa.fasta': No such file or directory
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry280RC1/perl/site/lib/Bio/Root/Root.pm:447
STACK: Bio::Root::IO::_initialize_io C:/Strawberry280RC1/perl/site/lib/Bio/Root/IO.pm:268
STACK: Bio::SeqIO::_initialize C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:513
STACK: Bio::SeqIO::fasta::_initialize C:/Strawberry280RC1/perl/site/lib/Bio\SeqIO\fasta.pm:87
STACK: Bio::SeqIO::new C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:389
STACK: Bio::SeqIO::new C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:435
STACK: Bio::AssemblyImprovement::Abacas::DelimiterRole::_split_sequence_on_delimiter lib/Bio/AssemblyImprovement/Abacas/DelimiterRole.pm:70
STACK: Bio::AssemblyImprovement::Abacas::Main::run lib/Bio/AssemblyImprovement/Abacas/Main.pm:73
STACK: t/Abacas/Main.t:25
-----------------------------------------------------------
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 4.
t/Abacas/Main.t .........................
Dubious, test returned 2 (wstat 512, 0x200)
All 4 subtests passed
'java' is not recognized as an internal or external command,
operable program or batch file.
Error running Trimmomatic with:
java -Xmx1000m -jar t/DummyTrimmomatic.jar PE -threads 1 t/data/trimmo_reads_1.fastq t/data/trimmo_reads_2.fastq trimmed.paired_1.fastq trimmed.unpaired_1.fastq trimmed.paired_2.fastq trimmed.unpaired_2.fastq ILLUMINACLIP:C:\STRAWB~1\cpan\build\Bio_AssemblyImprovement-1.160490-0\t\data\trimmo_adapters.fasta:2:10:7:1 MINLEN:50 at lib/Bio/AssemblyImprovement/AdapterRemoval/Trimmomatic/Main.pm line 45.
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/AdapterRemoval/Trimmomatic/Main.t .....
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
Use of uninitialized value $input_filename in pattern match (m//) at lib/Bio/AssemblyImprovement/Util/UnzipFileIfNeededRole.pm line 20.
Use of uninitialized value $input_filename in join or string at lib/Bio/AssemblyImprovement/Assemble/SGA/IndexAndCorrectReads.pm line 38.
Use of uninitialized value $input_filename in join or string at lib/Bio/AssemblyImprovement/Assemble/SGA/IndexAndCorrectReads.pm line 53.
# Failed test '.bwt index file exists in right location'
# at t/Assemble/SGA/IndexAndCorrectReads.t line 34.
# Failed test '.sai index file exists in right location'
# at t/Assemble/SGA/IndexAndCorrectReads.t line 36.
# Failed test 'Final fastq file exists in right location'
# at t/Assemble/SGA/IndexAndCorrectReads.t line 41.
# Looks like you failed 3 tests of 5.
t/Assemble/SGA/IndexAndCorrectReads.t ...
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/5 subtests
Use of uninitialized value $input_filename in pattern match (m//) at lib/Bio/AssemblyImprovement/Util/UnzipFileIfNeededRole.pm line 20.
Use of uninitialized value $input_filename in join or string at lib/Bio/AssemblyImprovement/Assemble/SGA/IndexAndCorrectReads.pm line 38.
Use of uninitialized value $input_filename in join or string at lib/Bio/AssemblyImprovement/Assemble/SGA/IndexAndCorrectReads.pm line 53.
gzip failed: input file 'C:\STRAWB~1\cpan\build\Bio_AssemblyImprovement-1.160490-0\AgmF0lIbsS\3wzuJemSPv/_sga_error_corrected.fastq' does not exist
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/Assemble/SGA/Main.t ...................
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
# Failed test 'SGA preprocessed file exists in expected location'
# at t/Assemble/SGA/PreprocessReads.t line 52.
# Failed test 'SGA preprocessed file exists in expected location'
# at t/Assemble/SGA/PreprocessReads.t line 70.
# Looks like you failed 2 tests of 11.
t/Assemble/SGA/PreprocessReads.t ........
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/11 subtests
'C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_circlator_script' is not recognized as an internal or external command,
operable program or batch file.
Failed to run circlator with C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_circlator_script all C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/contigs.fa C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/shuffled.fastq tmp_circularised at lib/Bio/AssemblyImprovement/Circlator/Main.pm line 49.
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/Circlator/Main.t ......................
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
gzip failed: input file 'C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/variable_length.fastq.keep' does not exist
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/DigitalNormalisation/Khmer/Main.t .....
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
cannot unlink file for C:\DOCUME~1\a\LOCALS~1\Temp\rXJkDKlXCw\_config_file: Permission denied at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot remove directory for C:/DOCUME~1/a/LOCALS~1/Temp/rXJkDKlXCw: Directory not empty at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot unlink file for C:\DOCUME~1\a\LOCALS~1\Temp\pYc9XtSZI1\_config_file: Permission denied at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot remove directory for C:/DOCUME~1/a/LOCALS~1/Temp/pYc9XtSZI1: Directory not empty at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot unlink file for C:\DOCUME~1\a\LOCALS~1\Temp\YpqX0liIZ2\_config_file: Permission denied at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot remove directory for C:/DOCUME~1/a/LOCALS~1/Temp/YpqX0liIZ2: Directory not empty at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
t/FillGaps/GapFillerConfig.t ............ ok
# Failed test 'gap filled file exists in expected location'
# at t/FillGaps/Iterative.t line 30.
# Failed test 'gap filled file exists in expected location'
# at t/FillGaps/Iterative.t line 47.
# Looks like you failed 2 tests of 12.
t/FillGaps/Iterative.t ..................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/12 subtests
'C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_iva_qc_script' is not recognized as an internal or external command,
operable program or batch file.
Error running iva_qc with: C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_iva_qc_script -f C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/forward.fastq -r C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/reverse.fastq --ref_db C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/database C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/contigs.fa test_iva_qc
# Failed test 'test_iva_qc.stats.txt OK'
# at t/IvaQC/Main.t line 46.
# Failed test 'test_iva_qc.assembly_contigs_hit_ref.fasta OK'
# at t/IvaQC/Main.t line 46.
# Failed test 'test_iva_qc.assembly_vs_ref.coords OK'
# at t/IvaQC/Main.t line 46.
# Failed test 'test_iva_qc.assembly_v_ref.act.sh OK'
# at t/IvaQC/Main.t line 46.
# Failed test 'test_iva_qc.assembly_v_ref.blastn OK'
# at t/IvaQC/Main.t line 46.
# Looks like you failed 5 tests of 16.
t/IvaQC/Main.t ..........................
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 5/16 subtests
'grep' is not recognized as an internal or external command,
operable program or batch file.
t/Overall/CheckAllModulesCompile.t ...... skipped: (no reason given)
t/PrepareForSubmission/RenameContigs.t .. ok
# Failed test 'Results file exists in expected location'
# at t/PrimerRemoval/Main.t line 39.
# Failed test 'Results file exists in expected location'
# at t/PrimerRemoval/Main.t line 39.
# Looks like you failed 2 tests of 6.
t/PrimerRemoval/Main.t ..................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/6 subtests
No consensus.fasta file. Error running Quiver with:
C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_quiver_script.pl --threads 6 --memory 8 --no_bsub --reference C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/contigs.fa RS_Resequencing tmp_quiver C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/data/ at lib/Bio/AssemblyImprovement/Quiver/Main.pm line 57.
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 2 just after 2.
t/Quiver/Main.t .........................
Dubious, test returned 2 (wstat 512, 0x200)
All 2 subtests passed
# Failed test 'java in PATH'
# at t/requires_external.t line 8.
# Looks like you failed 1 test of 1.
t/requires_external.t ...................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/1 subtests
t/Scaffold/Descaffold.t ................. ok
# Failed test 'Scaffolding file exists in expected location'
# at t/Scaffold/Iterative.t line 29.
# Failed test 'Scaffolding file exists in expected location'
# at t/Scaffold/Iterative.t line 44.
# Looks like you failed 2 tests of 12.
t/Scaffold/Iterative.t ..................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/12 subtests
t/Scaffold/PreprocessInputFiles.t ....... ok
cannot unlink file for C:\DOCUME~1\a\LOCALS~1\Temp\Kkc7PYzP5K\_config_file: Permission denied at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot remove directory for C:/DOCUME~1/a/LOCALS~1/Temp/Kkc7PYzP5K: Directory not empty at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot unlink file for C:\DOCUME~1\a\LOCALS~1\Temp\qYwvFxQAaP\_config_file: Permission denied at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot remove directory for C:/DOCUME~1/a/LOCALS~1/Temp/qYwvFxQAaP: Directory not empty at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot unlink file for C:\DOCUME~1\a\LOCALS~1\Temp\mdU1paQsVz\_config_file: Permission denied at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
cannot remove directory for C:/DOCUME~1/a/LOCALS~1/Temp/mdU1paQsVz: Directory not empty at C:/Strawberry280RC1/perl/lib/File/Temp.pm line 1616.
t/Scaffold/SSpaceConfig.t ............... ok
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: Could not write file 'C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/fasta_processor->output_filename_test.fa': Invalid argument
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry280RC1/perl/site/lib/Bio/Root/Root.pm:447
STACK: Bio::Root::IO::_initialize_io C:/Strawberry280RC1/perl/site/lib/Bio/Root/IO.pm:268
STACK: Bio::SeqIO::_initialize C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:513
STACK: Bio::SeqIO::fasta::_initialize C:/Strawberry280RC1/perl/site/lib/Bio\SeqIO\fasta.pm:87
STACK: Bio::SeqIO::new C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:389
STACK: Bio::SeqIO::new C:/Strawberry280RC1/perl/site/lib/Bio/SeqIO.pm:435
STACK: Bio::AssemblyImprovement::Util::FastaTools::remove_small_contigs lib/Bio/AssemblyImprovement/Util/FastaTools.pm:30
STACK: t/Util/FastaTools.t:30
-----------------------------------------------------------
# Tests were run but no plan was declared and done_testing() was not seen.
# Looks like your test exited with 22 just after 2.
t/Util/FastaTools.t .....................
Dubious, test returned 22 (wstat 5632, 0x1600)
All 2 subtests passed
t/Util/FastqTools.t ..................... ok
# Failed test 'sort contigs'
# at t/Util/OrderContigsByLength.t line 30.
# Failed test at t/Util/OrderContigsByLength.t line 31.
# Could not open file C:\DOCUME~1\a\LOCALS~1\Temp\u30jzZ99fe\contigs_needing_sorted.fa.sorted: No such file or directory
# Failed test 'sort contigs'
# at t/Util/OrderContigsByLength.t line 35.
# Failed test at t/Util/OrderContigsByLength.t line 36.
# Could not open file C:\DOCUME~1\a\LOCALS~1\Temp\u30jzZ99fe\user_file_name.fa: No such file or directory
# Looks like you failed 4 tests of 11.
t/Util/OrderContigsByLength.t ...........
Dubious, test returned 4 (wstat 1024, 0x400)
Failed 4/11 subtests
C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_sspace_v2_script.pl does not exist. Using default: C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_sspace_script.pl at lib/Bio/AssemblyImprovement/Validate/Executable.pm line 29.
C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/does_not_exist.pl does not exist. Using default: C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_gap_filler_script.pl at lib/Bio/AssemblyImprovement/Validate/Executable.pm line 29.
# Failed test at t/Validate/Executable.t line 39.
# got: 'C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_sspace_script.pl'
# expected: 'C:/STRAWB~1/cpan/build/Bio_AssemblyImprovement-1.160490-0/t/dummy_sspace_v2_script.pl'
# Looks like you failed 1 test of 4.
t/Validate/Executable.t .................
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/4 subtests
Test Summary Report
-------------------
t/Abacas/Iterative.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Abacas/Main.t (Wstat: 512 Tests: 4 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/AdapterRemoval/Trimmomatic/Main.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Assemble/SGA/IndexAndCorrectReads.t (Wstat: 768 Tests: 5 Failed: 3)
Failed tests: 3-5
Non-zero exit status: 3
t/Assemble/SGA/Main.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/Assemble/SGA/PreprocessReads.t (Wstat: 512 Tests: 11 Failed: 2)
Failed tests: 8, 11
Non-zero exit status: 2
t/Circlator/Main.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/DigitalNormalisation/Khmer/Main.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/FillGaps/Iterative.t (Wstat: 512 Tests: 12 Failed: 2)
Failed tests: 8, 12
Non-zero exit status: 2
t/IvaQC/Main.t (Wstat: 1280 Tests: 16 Failed: 5)
Failed tests: 3-7
Non-zero exit status: 5
t/Overall/CheckAllModulesCompile.t (Wstat: 65280 Tests: 0 Failed: 0)
Non-zero exit status: 255
t/PrimerRemoval/Main.t (Wstat: 512 Tests: 6 Failed: 2)
Failed tests: 5-6
Non-zero exit status: 2
t/Quiver/Main.t (Wstat: 512 Tests: 2 Failed: 0)
Non-zero exit status: 2
Parse errors: No plan found in TAP output
t/requires_external.t (Wstat: 256 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 1
t/Scaffold/Iterative.t (Wstat: 512 Tests: 12 Failed: 2)
Failed tests: 8, 12
Non-zero exit status: 2
t/Util/FastaTools.t (Wstat: 5632 Tests: 2 Failed: 0)
Non-zero exit status: 22
Parse errors: No plan found in TAP output
t/Util/OrderContigsByLength.t (Wstat: 1024 Tests: 11 Failed: 4)
Failed tests: 4-5, 8-9
Non-zero exit status: 4
t/Validate/Executable.t (Wstat: 256 Tests: 4 Failed: 1)
Failed test: 2
Non-zero exit status: 1
Files=24, Tests=167, 432 wallclock secs ( 0.21 usr + 0.16 sys = 0.37 CPU)
Result: FAIL
Failed 18/24 test programs. 22/167 subtests failed.
gmake: *** [Makefile:1008: test_dynamic] Error 1
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------------------- ---- --------
Bio::SeqIO 0 1.007002
Cwd 0 3.74
File::Basename 0 2.85
File::Copy 0 2.33
File::Path 2.07 2.15
File::Spec 0 3.74
File::Temp 0 0.2304
File::Which 0 1.22
Getopt::Long 0 2.5
Getopt::Std 0 1.12
IO::Compress::Gzip 0 2.081
IO::Uncompress::Gunzip 0 2.081
lib 0 0.64
Moose 0 2.2011
Moose::Role 0 2.2011
POSIX 0 1.84
Statistics::Lite 0 3.62
strict 0 1.11
Switch 0 2.17
warnings 0 1.42
build_requires:
Module Need Have
---------------------- ---- --------
Env::Path 0 0.19
ExtUtils::MakeMaker 0 7.34
File::Slurp 0 9999.19
Test::File::Contents 0 0.23
Test::Most 0 0.35
configure_requires:
Module Need Have
---------------------- ---- --------
ExtUtils::MakeMaker 0 7.34
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Git\cmd;C:\Strawberry280RC1\c\bin;C:\Strawberry280RC1\perl\site\bin;C:\Strawberry280RC1\perl\bin
PERL5LIB = C:\STRAWB~1\cpan\build\Switch-2.17-0/blib/arch;C:\STRAWB~1\cpan\build\Switch-2.17-0/blib/lib;C:\STRAWB~1\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\STRAWB~1\cpan\build\Statistics-Lite-3.62-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1604
PERL5_CPAN_IS_RUNNING = 1604
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 180,1604
PERL_CR_SMOKER_CURRENT = Bio_AssemblyImprovement-1.160490
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_HASH_SEED = 0x11111111
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
PROCESSOR_IDENTIFIER = x86 Family 16 Model 5 Stepping 3, AuthenticAMD
TEMP = C:\DOCUME~1\a\LOCALS~1\Temp
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\Strawberry280RC1\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.20
CPAN::Meta 2.150010
Cwd 3.74
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.71
ExtUtils::ParseXS 3.39
File::Spec 3.74
JSON 2.97001
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302136
YAML 1.26
YAML::Syck 1.30
version 0.9924
--
Summary of my perl5 (revision 5 version 28 subversion 0) configuration:
Platform:
osname=MSWin32
osvers=5.1.2600
archname=MSWin32-x86-multi-thread-64int
uname='Win32 strawberry-perl 5.28.0.1-beta1 #1 Tue May 22 11:32:25 2018 i386'
config_args='undef'
hint=recommended
useposix=true
d_sigaction=undef
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=undef
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='gcc'
ccflags =' -s -O2 -DWIN32 -D__USE_MINGW_ANSI_STDIO -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -DUSE_PERLIO -fwrapv -fno-strict-aliasing -mms-bitfields'
optimize='-s -O2'
cppflags='-DWIN32'
ccversion=''
gccversion='7.1.0'
gccosandvers=''
intsize=4
longsize=4
ptrsize=4
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=12
longdblkind=3
ivtype='long long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='long long'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='g++'
ldflags ='-s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib"'
libpth=C:\STRAWB~1\c\lib C:\STRAWB~1\c\i686-w64-mingw32\lib C:\STRAWB~1\c\lib\gcc\i686-w64-mingw32\7.1.0
libs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=
so=dll
useshrplib=true
libperl=libperl528.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs
dlext=xs.dll
d_dlsymun=undef
ccdlflags=' '
cccdlflags=' '
lddlflags='-mdll -s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
HAVE_INTERP_INTERN
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT
PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
RC1
Built under MSWin32
Compiled at May 22 2018 11:43:06
%ENV:
PERL5LIB="C:\STRAWB~1\cpan\build\Switch-2.17-0/blib/arch;C:\STRAWB~1\cpan\build\Switch-2.17-0/blib/lib;C:\STRAWB~1\cpan\build\Statistics-Lite-3.62-0/blib/arch;C:\STRAWB~1\cpan\build\Statistics-Lite-3.62-0/blib/lib"
PERL5_CPANPLUS_IS_RUNNING="1604"
PERL5_CPAN_IS_RUNNING="1604"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="180,1604"
PERL_CR_SMOKER_CURRENT="Bio_AssemblyImprovement-1.160490"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_HASH_SEED="0x11111111"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
C:\STRAWB~1\cpan\build\Switch-2.17-0/blib/arch
C:\STRAWB~1\cpan\build\Switch-2.17-0/blib/lib
C:\STRAWB~1\cpan\build\Statistics-Lite-3.62-0/blib/arch
C:\STRAWB~1\cpan\build\Statistics-Lite-3.62-0/blib/lib
C:/Strawberry280RC1/perl/site/lib
C:/Strawberry280RC1/perl/vendor/lib
C:/Strawberry280RC1/perl/lib
.