Bio-Sketch-Mash v0.9 Perl 5 v5.16.3 x86_64-linux-thread-multi
- Status
- Fail
- From
- Nigel Horne
- Dist
-
Bio-Sketch-Mash v0.9
- Platform
- Perl 5 v5.16.3 x86_64-linux-thread-multi
- Date
- 2019-03-18 20:00:12
- ID
- 70a0f11a-49b8-11e9-bf31-80c71e9d5857
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Lee S. Katz,
This is a computer-generated report for Bio-Sketch-Mash-0.9
on perl 5.16.3, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/bin/perl5.16.3" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
# uncompressing capnproto
# Failed test 'Found Mash executable'
# at t/01_env.t line 17.
# Looks like you failed 1 test of 3.
t/01_env.t ...........
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/3 subtests
# Configuring capnproto
ERROR: this file has non-utf8 characters: /tmp/build/Bio-Sketch-Mash-0.9-0/t/data/PNUSAL003567_R1_.fastq.gz.msh at /tmp/build/Bio-Sketch-Mash-0.9-0/t/../lib/Bio/Sketch/Mash.pm line 201.
# Looks like your test exited with 127 before it could output anything.
t/02_makeSketches.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 1/1 subtests
ERROR: this file has non-utf8 characters: /tmp/build/Bio-Sketch-Mash-0.9-0/t/data/PNUSAL003567_R1_.fastq.gz.msh at /tmp/build/Bio-Sketch-Mash-0.9-0/t/../lib/Bio/Sketch/Mash.pm line 201.
# Looks like your test exited with 127 before it could output anything.
t/03_readSketches.t ..
Dubious, test returned 127 (wstat 32512, 0x7f00)
Failed 3/3 subtests
configure: error: *** A compiler with support for C++14 language features is required.
Bailout called. Further testing stopped: Failed the configuration of capnp
FAILED--Further testing stopped: Failed the configuration of capnp
Makefile:871: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 127
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- -------- --------
Bio::Sketch 0 0.3
Class::Interface 0 1.01
Data::Dumper 0 2.135_06
Encode 2.21 2.44_01
Exporter 0 5.66
File::Basename 0 2.84
JSON 2.9 4.00
List::Util 0 1.25
perl 5.012000 5.016003
Thread::Queue 0 2.12
threads 0 1.86
threads::shared 0 1.40
build_requires:
Module Need Have
------------------- -------- --------
Test::More 0.47 1.302160
configure_requires:
Module Need Have
------------------- -------- --------
ExtUtils::MakeMaker 0 7.34
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j2
NONINTERACTIVE_TESTING = 1
PATH = /home/smoker/perl5/perlbrew/bin:/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PERL5LIB = /tmp/build/Bio-Sketch-0.3-0/blib/arch:/tmp/build/Bio-Sketch-0.3-0/blib/lib:/tmp/build/Class-Interface-1.01-0/blib/arch:/tmp/build/Class-Interface-1.01-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1736
PERL5_CPAN_IS_RUNNING = 1736
PERLBREW_HOME = /home/smoker/.perlbrew
PERLBREW_MANPATH = /home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/man
PERLBREW_PATH = /home/smoker/perl5/perlbrew/bin:/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/bin
PERLBREW_PERL = perl-5.16.3-thread
PERLBREW_ROOT = /home/smoker/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.86
PERLBREW_VERSION = 0.86
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/bash
TERM = xterm
TMPDIR = /tmp/testwrapper.1725
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/bin/perl5.16.3
$UID/$EUID = 1000 / 1000
$GID = 1000
$EGID = 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.22
CPAN::Meta 2.143240
Cwd 3.75
ExtUtils::CBuilder 0.280206
ExtUtils::Command 7.34
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.16
File::Spec 3.75
JSON 4.00
JSON::PP 2.27203
Module::Build 0.39_01
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.42
Test::More 1.302160
YAML 1.27
YAML::Syck 1.31
version 0.99
--
Summary of my perl5 (revision 5 version 16 subversion 3) configuration:
Platform:
osname=linux, osvers=4.16.0-2-amd64, archname=x86_64-linux-thread-multi
uname='linux bf01daf883cd 4.16.0-2-amd64 #1 smp debian 4.16.16-2 (2018-06-22) x86_64 gnulinux '
config_args='-de -Dprefix=/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread -Dusedevel -Dusethreads -Accflags=-O2 -pipe -Wall -Wextra -mtune=native -march=native -Aeval:scriptdir=/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -O2 -pipe -Wall -Wextra -mtune=native -march=native -fno-strict-aliasing -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -O2 -pipe -Wall -Wextra -mtune=native -march=native -fno-strict-aliasing -fstack-protector -I/usr/local/include'
ccversion='', gccversion='6.3.0 20170516', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV PERL_IMPLICIT_CONTEXT
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PERL_USE_DEVEL
USE_64_BIT_ALL USE_64_BIT_INT USE_ITHREADS
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_PERLIO
USE_PERL_ATOF USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.52
Built under linux
Compiled at Jan 20 2019 00:56:54
%ENV:
PERL5LIB="/tmp/build/Bio-Sketch-0.3-0/blib/arch:/tmp/build/Bio-Sketch-0.3-0/blib/lib:/tmp/build/Class-Interface-1.01-0/blib/arch:/tmp/build/Class-Interface-1.01-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="1736"
PERL5_CPAN_IS_RUNNING="1736"
PERLBREW_HOME="/home/smoker/.perlbrew"
PERLBREW_MANPATH="/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/man"
PERLBREW_PATH="/home/smoker/perl5/perlbrew/bin:/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/bin"
PERLBREW_PERL="perl-5.16.3-thread"
PERLBREW_ROOT="/home/smoker/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.86"
PERLBREW_VERSION="0.86"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/tmp/build/Bio-Sketch-0.3-0/blib/arch
/tmp/build/Bio-Sketch-0.3-0/blib/lib
/tmp/build/Class-Interface-1.01-0/blib/arch
/tmp/build/Class-Interface-1.01-0/blib/lib
/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/lib/site_perl/5.16.3/x86_64-linux-thread-multi
/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/lib/site_perl/5.16.3
/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/lib/5.16.3/x86_64-linux-thread-multi
/home/smoker/perl5/perlbrew/perls/perl-5.16.3-thread/lib/5.16.3
.