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From: metabase:user:30ae4450-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-Draw-FeatureStack-0.03 v5.16.3
Date: 2014-04-03T03:54:33Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christian Frech,
This is a computer-generated report for Bio-Draw-FeatureStack-0.03
on perl 5.16.3, created by CPAN-Reporter-1.2010_01.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\strawberry163\c\bin\dmake.exe test':
C:\strawberry163\perl\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib\lib', 'blib\arch')" t/*.t
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_m32Fm7: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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t/alt_feature.t ......... ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_6VBsdY: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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t/basecase.t ............ ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_onpbvq: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
# Failed test 'Generation of feature_offset figures'
# at t/feature_offset.t line 19.
# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at C:\strawberry163\cpan\build\Bio-Draw-FeatureStack-0.03-Jg00y0\blib\lib/Bio/Draw/FeatureStack.pm line 439.
# Looks like you planned 11 tests but ran 6.
# Looks like you failed 1 test of 6 run.
t/feature_offset.t ......
Dubious, test returned 1 (wstat 256, 0x100)
Failed 6/11 subtests
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_J6Anjb: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
# Failed test 'Generation of manuscript figure 1'
# at t/figures_manuscript.t line 17.
# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at C:\strawberry163\cpan\build\Bio-Draw-FeatureStack-0.03-Jg00y0\blib\lib/Bio/Draw/FeatureStack.pm line 439.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_qEwwvh: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_S9E8gU: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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# Looks like you planned 27 tests but ran 21.
# Looks like you failed 1 test of 21 run.
t/figures_manuscript.t ..
Dubious, test returned 1 (wstat 256, 0x100)
Failed 7/27 subtests
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_rds149: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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t/flip_minus.t .......... ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
UNIVERSAL->import is deprecated and will be removed in a future perl at C:/strawberry163/perl/site/lib/Bio/Tree/TreeFunctionsI.pm line 94.
Subroutine new redefined at C:/strawberry163/perl/site/lib/Bio\Location\Simple.pm line 93, <GEN0> line 29.
Subroutine start redefined at C:/strawberry163/perl/site/lib/Bio\Location\Simple.pm line 115, <GEN0> line 29.
Subroutine end redefined at C:/strawberry163/perl/site/lib/Bio\Location\Simple.pm line 144, <GEN0> line 29.
Subroutine length redefined at C:/strawberry163/perl/site/lib/Bio\Location\Simple.pm line 190, <GEN0> line 29.
Subroutine location_type redefined at C:/strawberry163/perl/site/lib/Bio\Location\Simple.pm line 281, <GEN0> line 29.
Subroutine to_FTstring redefined at C:/strawberry163/perl/site/lib/Bio\Location\Simple.pm line 328, <GEN0> line 29.
Subroutine trunc redefined at C:/strawberry163/perl/site/lib/Bio\Location\Simple.pm line 370, <GEN0> line 29.
Subroutine new redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 104, <GEN0> line 43.
Subroutine each_Location redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 136, <GEN0> line 43.
Subroutine sub_Location redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 165, <GEN0> line 43.
Subroutine add_sub_Location redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 234, <GEN0> line 43.
Subroutine splittype redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 258, <GEN0> line 43.
Subroutine is_single_sequence redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 286, <GEN0> line 43.
Subroutine guide_strand redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 311, <GEN0> line 43.
Subroutine strand redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 339, <GEN0> line 43.
Subroutine flip_strand redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 380, <GEN0> line 43.
Subroutine start redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 401, <GEN0> line 43.
Subroutine end redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 420, <GEN0> line 43.
Subroutine min_start redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 439, <GEN0> line 43.
Subroutine max_start redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 461, <GEN0> line 43.
Subroutine start_pos_type redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 484, <GEN0> line 43.
Subroutine min_end redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 505, <GEN0> line 43.
Subroutine max_end redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 528, <GEN0> line 43.
Subroutine end_pos_type redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 552, <GEN0> line 43.
Subroutine seq_id redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 578, <GEN0> line 43.
Subroutine to_FTstring redefined at C:/strawberry163/perl/site/lib/Bio\Location\Split.pm line 624, <GEN0> line 43.
Subroutine new redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 147, <GEN0> line 89.
Subroutine location_type redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 174, <GEN0> line 89.
Subroutine start redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 236, <GEN0> line 89.
Subroutine end redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 263, <GEN0> line 89.
Subroutine min_start redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 290, <GEN0> line 89.
Subroutine max_start redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 309, <GEN0> line 89.
Subroutine start_pos_type redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 329, <GEN0> line 89.
Subroutine min_end redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 359, <GEN0> line 89.
Subroutine max_end redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 378, <GEN0> line 89.
Subroutine end_pos_type redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 398, <GEN0> line 89.
Subroutine to_FTstring redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 469, <GEN0> line 89.
Subroutine _fuzzypointdecode redefined at C:/strawberry163/perl/site/lib/Bio\Location\Fuzzy.pm line 581, <GEN0> line 89.
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t/genbank.t ............. ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_vAGH7x: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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t/ignore_utr.t .......... ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_hSO98L: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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t/intron_size.t ......... ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_KHSqQZ: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
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t/ruler.t ............... ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_BRP9iE: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
"rm" ¥ ï¥âáï ¢ãâ॥© ¨«¨ ¢¥è¥©
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t/seperator.t ........... ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_t6AaeK: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
"rm" ¥ ï¥âáï ¢ãâ॥© ¨«¨ ¢¥è¥©
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t/skip_transcript.t ..... ok
Replacement list is longer than search list at C:/strawberry163/perl/site/lib/Bio/Range.pm line 251.
Use of qw(...) as parentheses is deprecated at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 72, <DATA> line 192.
cannot remove directory for C:\DOCUME~1\c\LOCALS~1\Temp\SeqFeatureLoadHelper_UVP8Ux: Directory not empty at C:/strawberry163/perl/site/lib/Bio/DB/SeqFeature/Store/LoadHelper.pm line 60.
"rm" ¥ ï¥âáï ¢ãâ॥© ¨«¨ ¢¥è¥©
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t/span.t ................ ok
Test Summary Report
-------------------
t/feature_offset.t (Wstat: 256 Tests: 6 Failed: 1)
Failed test: 6
Non-zero exit status: 1
Parse errors: Bad plan. You planned 11 tests but ran 6.
t/figures_manuscript.t (Wstat: 256 Tests: 21 Failed: 1)
Failed test: 7
Non-zero exit status: 1
Parse errors: Bad plan. You planned 27 tests but ran 21.
Files=12, Tests=138, 30 wallclock secs ( 0.03 usr + 0.16 sys = 0.19 CPU)
Result: FAIL
Failed 2/12 test programs. 2/138 subtests failed.
dmake.exe: Error code 255, while making 'test_dynamic'
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------------------ ---- ----
Bio::Graphics 2.02 2.37
Bio::Graphics::Glyph::decorated_gene 0 0
GD::SVG 0.32 0.33
Test::Exception 0 0.32
build_requires:
Module Need Have
------------------------------------ ---- ----
ExtUtils::MakeMaker 0 6.64
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = C:\Program Files\Far Manager\;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\strawberry163\c\bin;C:\strawberry163\perl\site\bin;C:\strawberry163\perl\bin
PERL5LIB = C:\strawberry163\cpan\build\Bio-Graphics-2.37-v3Ym3a/blib/arch;C:\strawberry163\cpan\build\Bio-Graphics-2.37-v3Ym3a/blib/lib;C:\strawberry163\cpan\build\GD-SVG-0.33-kDWtDw/blib/arch;C:\strawberry163\cpan\build\GD-SVG-0.33-kDWtDw/blib/lib;C:\strawberry163\cpan\build\SVG-2.59-42FkkC/blib/arch;C:\strawberry163\cpan\build\SVG-2.59-42FkkC/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1948
PERL5_CPAN_IS_RUNNING = 1948
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1256,1948
PERL_CR_SMOKER_CURRENT = Bio-Draw-FeatureStack-0.03
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PROCESSOR_IDENTIFIER = x86 Family 16 Model 5 Stepping 3, AuthenticAMD
TEMP = C:\DOCUME~1\c\LOCALS~1\Temp
TERM = dumb
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\strawberry163\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.00
CPAN::Meta 2.140640
Cwd 3.40
ExtUtils::CBuilder 0.280206
ExtUtils::Command 1.17
ExtUtils::Install 1.58
ExtUtils::MakeMaker 6.64
ExtUtils::Manifest 1.61
ExtUtils::ParseXS 3.24
File::Spec 3.40
JSON 2.90
JSON::PP 2.27203
Module::Build 0.4205
Module::Signature 0.70
Parse::CPAN::Meta 1.4414
Test::Harness 3.30
Test::More 1.001002
YAML 0.90
YAML::Syck 1.24
version 0.9902
--
Summary of my perl5 (revision 5 version 16 subversion 3) configuration:
Platform:
osname=MSWin32, osvers=4.0, archname=MSWin32-x86-multi-thread
uname='Win32 strawberry-perl 5.16.3.1 #1 Tue Mar 12 13:55:20 2013 i386'
config_args='undef'
hint=recommended, useposix=true, d_sigaction=undef
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='gcc', ccflags =' -s -O2 -DWIN32 -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -fno-strict-aliasing -mms-bitfields',
optimize='-s -O2',
cppflags='-DWIN32'
ccversion='', gccversion='4.6.3', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=undef, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='long long', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='g++', ldflags ='-s -L"C:\strawberry163\perl\lib\CORE" -L"C:\strawberry163\c\lib"'
libpth=C:\strawberry163\c\lib C:\strawberry163\c\i686-w64-mingw32\lib
libs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs=-lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=, so=dll, useshrplib=true, libperl=libperl516.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs, dlext=dll, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags='-mdll -s -L"C:\strawberry163\perl\lib\CORE" -L"C:\strawberry163\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES HAVE_INTERP_INTERN MULTIPLICITY
PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV PL_OP_SLAB_ALLOC
USE_ITHREADS USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under MSWin32
Compiled at Mar 12 2013 14:01:07
%ENV:
PERL5LIB="C:\strawberry163\cpan\build\Bio-Graphics-2.37-v3Ym3a/blib/arch;C:\strawberry163\cpan\build\Bio-Graphics-2.37-v3Ym3a/blib/lib;C:\strawberry163\cpan\build\GD-SVG-0.33-kDWtDw/blib/arch;C:\strawberry163\cpan\build\GD-SVG-0.33-kDWtDw/blib/lib;C:\strawberry163\cpan\build\SVG-2.59-42FkkC/blib/arch;C:\strawberry163\cpan\build\SVG-2.59-42FkkC/blib/lib"
PERL5_CPANPLUS_IS_RUNNING="1948"
PERL5_CPAN_IS_RUNNING="1948"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1256,1948"
PERL_CR_SMOKER_CURRENT="Bio-Draw-FeatureStack-0.03"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
C:\strawberry163\cpan\build\Bio-Graphics-2.37-v3Ym3a/blib/arch
C:\strawberry163\cpan\build\Bio-Graphics-2.37-v3Ym3a/blib/lib
C:\strawberry163\cpan\build\GD-SVG-0.33-kDWtDw/blib/arch
C:\strawberry163\cpan\build\GD-SVG-0.33-kDWtDw/blib/lib
C:\strawberry163\cpan\build\SVG-2.59-42FkkC/blib/arch
C:\strawberry163\cpan\build\SVG-2.59-42FkkC/blib/lib
C:/strawberry163/perl/site/lib
C:/strawberry163/perl/vendor/lib
C:/strawberry163/perl/lib
.