FASTX-Reader v1.12.0-TRIAL Perl 5 v5.34.0 amd64-freebsd
- Status
- Pass
- From
- Slaven Rezić
- Dist
-
FASTX-Reader v1.12.0-TRIAL
- Platform
- Perl 5 v5.34.0 amd64-freebsd
- Date
- 2023-09-25 12:22:23
- ID
- 2e0d8b2c-5b9e-11ee-b5fd-e32f6e8775ea
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andrea Telatin,
This is a computer-generated report for FASTX-Reader-1.12.0-TRIAL
on perl 5.34.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/usr/perl5.34.0p/bin/perl5.34.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/01_basic_test.t ................. ok
t/02_parse_crlf.t ................. ok
t/02_parse_fasta.t ................ ok
t/02_preload.t .................... ok
t/02_preload_obj.t ................ ok
t/03_parse_fastq.t ................ ok
t/04_stdin_1.t .................... ok
t/04_stdin_2.t .................... ok
t/05_fasta_comments.t ............. ok
t/06_fastq_comments.t ............. ok
t/07_fastq_parser_1.t ............. ok
t/07_fastq_parser_2.t ............. ok
t/08_gzipped_fastq.t .............. ok
t/08_gzipped_fastq_alternative.t .. ok
t/09_error_nofile.t ............... ok
t/10_error_fastq.t ................ ok
t/11_get_format.t ................. ok
t/12_gzipped_fasta.t .............. ok
t/13_illumina_read.t .............. ok
t/14_illumina_nonillumina.t ....... ok
t/15_parse_pe.t ................... ok
t/16_parse_interleaved.t .......... ok
t/17_parse_pe_autopair.t .......... ok
t/18_parse_pe_bad_names.t ......... ok
t/19_parse_pe_rev.t ............... ok
t/20_parse_pe_bad_interleaved.t ... ok
t/30_helper.t ..................... ok
t/31_helper_fun.t ................. ok
t/40_two_fastas.t ................. ok
t/40_two_files.t .................. ok
t/51_seq_basic_1.t ................ ok
t/51_seq_basic_new.t .............. ok
t/52_methods_seq.t ................ ok
t/53_Seq_asfastx.t ................ ok
t/53_with_fastxseq.t .............. ok
t/54_copy.t ....................... ok
t/54_invalid_seq.t ................ ok
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
[WARNING] FASTX::Seq->as_fastq(): Provide a _char_ as quality, not a value (WRONG): defaulting to I
t/54_Seq_asfastx_bad.t ............ ok
t/54_Seq_isfastx.t ................ ok
t/55_next.t ....................... ok
t/55_nextobj.t .................... ok
t/55_Seq_slice.t .................. ok
t/56_Seq_flags.t .................. ok
t/57_Seq_Trans.t .................. ok
t/61_seq_qual.t ................... ok
t/62_seq_qualities.t .............. ok
t/release-00-pod.t ................ skipped: these tests are for release candidate testing
t/release-01-pod-coverage.t ....... skipped: these tests are for release candidate testing
t/release-03-minimum-standards.t .. skipped: these tests are for release candidate testing
t/release-05-changes.t ............ skipped: these tests are for release candidate testing
t/release-check-version.t ......... skipped: these tests are for release candidate testing
All tests successful.
Files=51, Tests=444, 6 wallclock secs ( 0.23 usr 0.17 sys + 3.98 cusr 1.27 csys = 5.65 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ----- --------
Capture::Tiny 0.40 0.48
Carp 1.2 1.52
Data::Dumper 2.1 2.183
File::Fetch 0 1.04
FindBin 1.3 1.53
JSON::PP 0 4.15
perl 5.016 5.034000
PerlIO::encoding 0 0.30
Time::HiRes 0 1.9767
build_requires:
Module Need Have
------------------- ----- --------
ExtUtils::MakeMaker 0 7.70
configure_requires:
Module Need Have
------------------- ----- --------
ExtUtils::MakeMaker 0 7.70
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/usr/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 86330
PERL5_CPAN_IS_RUNNING = 86330
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 86080,86330
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2023092512/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/sh
TMPDIR = /var/tmp/cpansmoker-1023/2023092512
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/perl5.34.0p/bin/perl5.34.0
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.36
CPAN::Meta 2.150010
Cwd 3.80
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.70
ExtUtils::Install 2.20
ExtUtils::MakeMaker 7.70
ExtUtils::Manifest 1.75
ExtUtils::ParseXS 3.51
File::Spec 3.80
JSON 4.10
JSON::PP 4.15
Module::Build 0.4234
Module::Signature 0.88
Parse::CPAN::Meta 2.150010
Test::Harness 3.47
Test::More 1.302195
YAML 1.30
YAML::Syck 1.34
version 0.9929
--
Summary of my perl5 (revision 5 version 34 subversion 0) configuration:
Platform:
osname=freebsd
osvers=12.2-stable
archname=amd64-freebsd
uname='freebsd cloud1.bbbike.org 12.2-stable freebsd 12.2-stable stable12-n233163-8ab4e1b9512 generic amd64 '
config_args='-ds -e -Dprefix=/usr/perl5.34.0p -Dcf_email=srezic@cpan.org -Doptimize=-O2 -pipe'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
Compiler:
cc='cc'
ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
optimize='-O2 -pipe'
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='FreeBSD Clang 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags ='-pthread -Wl,-E -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/lib/clang/10.0.1/lib
libs=-lpthread -lgdbm -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -ldl -lm -lcrypt -lutil -lc
libc=
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags=' '
cccdlflags='-DPIC -fPIC'
lddlflags='-shared -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under freebsd
Compiled at May 25 2021 16:34:52
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="86330"
PERL5_CPAN_IS_RUNNING="86330"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="86080,86330"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2023092512/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/usr/perl5.34.0p/lib/site_perl/5.34.0/amd64-freebsd
/usr/perl5.34.0p/lib/site_perl/5.34.0
/usr/perl5.34.0p/lib/5.34.0/amd64-freebsd
/usr/perl5.34.0p/lib/5.34.0
.