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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-Das-Lite-2.11 v5.25.4 GNU/Linux
Date: 2016-09-02T07:30:34Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Roger Pettett,
This is a computer-generated report for Bio-Das-Lite-2.11
on perl 5.25.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/00-critic.t ............... skipped: Author test. Set $ENV{TEST_AUTHOR} to a true value to run.
t/00-distribution.t ......... ok
t/00-pod.t .................. ok
t/00-podcoverage.t .......... ok
# Failed test 'feature-by-id element was a hash'
# at t/01-general.t line 52.
# Looks like you failed 1 test of 7.
t/01-general.t ..............
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/7 subtests
# Failed test 'HTTP OK, X-DAS OK (code)'
# at t/02-statuscodes.t line 27.
# got: '500'
# expected: '200'
# Failed test 'HTTP OK, X-DAS OK (message)'
# at t/02-statuscodes.t line 28.
# got: 'Internal Server Error'
# expected: 'OK'
# Failed test 'HTTP OK, X-DAS-Status error (code)'
# at t/02-statuscodes.t line 27.
# got: '500'
# expected: '401'
# Failed test 'HTTP OK, X-DAS-Status error (message)'
# at t/02-statuscodes.t line 28.
# got: 'Internal Server Error'
# expected: 'Bad data source (data source unknown)'
# Looks like you failed 4 tests of 6.
t/02-statuscodes.t ..........
Dubious, test returned 4 (wstat 1024, 0x400)
Failed 4/6 subtests
# Failed test 'dsns call returned OK status (service http://das.sanger.ac.uk/das status 410 Gone)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.sanger.ac.uk/das)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.sanger.ac.uk/das)'
# at t/05-singledsn.t line 41.
# Failed test 'dsns call returned OK status (service http://das.ensembl.org/das/dsn status 410 Gone)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.ensembl.org/das/dsn)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.ensembl.org/das/dsn)'
# at t/05-singledsn.t line 41.
# Failed test 'dsns call returned OK status (service http://das.ensembl.org/das/dsn#foo status 410 Gone)'
# at t/05-singledsn.t line 38.
# Failed test 'dsns call gave a arrayref value (service http://das.ensembl.org/das/dsn#foo)'
# at t/05-singledsn.t line 39.
# Failed test 'dsns call returned at least one source (service http://das.ensembl.org/das/dsn#foo)'
# at t/05-singledsn.t line 41.
# Looks like you failed 9 tests of 33.
t/05-singledsn.t ............
Dubious, test returned 9 (wstat 2304, 0x900)
Failed 9/33 subtests
t/06-singledsn-singleseg.t .. ok
# Failed test 'features hash contains an array'
# at t/07-singledsn-multiseg.t line 27.
# got: ''
# expected: 'ARRAY'
Can't use an undefined value as an ARRAY reference at t/07-singledsn-multiseg.t line 39.
# Looks like your test exited with 115 just after 3.
t/07-singledsn-multiseg.t ...
Dubious, test returned 115 (wstat 29440, 0x7300)
Failed 8/10 subtests
# Failed test 'dsns call returned OK status (status is 410 Gone)'
# at t/10-multidsn.t line 34.
# Failed test 'dsns call gave a arrayref value for the one key'
# at t/10-multidsn.t line 36.
Can't use an undefined value as an ARRAY reference at t/10-multidsn.t line 38.
# Looks like your test exited with 115 just after 9.
t/10-multidsn.t .............
Dubious, test returned 115 (wstat 29440, 0x7300)
Failed 4/11 subtests
t/20-authentication.t ....... ok
t/21-proxy.t ................ skipped: Proxy testing requires POE and WWW::Curl::Simple
t/40-dna.t .................. ok
t/45-sequence.t ............. ok
t/50-entry_points.t ......... ok
t/60-features.t ............. ok
Base class package "t::FileStub" is empty.
(Perhaps you need to 'use' the module which defines that package first,
or make that module available in @INC (@INC contains: /tmpfs/.cpan-build-cpansand/2016090206/Bio-Das-Lite-2.11-1/blib/lib /tmpfs/.cpan-build-cpansand/2016090206/Bio-Das-Lite-2.11-1/blib/arch lib /home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/arch /home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/lib /home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/arch /home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/lib /home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/arch /home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/lib /home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/arch /home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/lib /opt/perl-5.25.4t/lib/site_perl/5.25.4/x86_64-linux-thread-multi /opt/perl-5.25.4t/lib/site_perl/5.25.4 /opt/perl-5.25.4t/lib/5.25.4/x86_64-linux-thread-multi /opt/perl-5.25.4t/lib/5.25.4).
The file t/FileStub.pm does exist in the current directory. But note
that base.pm, when loading a module, now ignores the current working
directory if it is the last entry in @INC. If your software worked on
previous versions of Perl, the best solution is to use FindBin to
detect the path properly and to add that path to @INC. As a last
resort, you can re-enable looking in the current working directory by
adding "use lib '.'" to your code.)
at t/FileStubChunked.pm line 11.
BEGIN failed--compilation aborted at t/FileStubChunked.pm line 11.
Compilation failed in require at t/60-features_chunked.t line 12.
BEGIN failed--compilation aborted at t/60-features_chunked.t line 12.
# Looks like your test exited with 2 before it could output anything.
t/60-features_chunked.t .....
Dubious, test returned 2 (wstat 512, 0x200)
Failed 1/1 subtests
t/60-features_empty.t ....... ok
t/61-features_group.t ....... ok
t/70-alignment.t ............ ok
t/80-structure.t ............ ok
t/90-sources.t .............. ok
Test Summary Report
-------------------
t/01-general.t (Wstat: 256 Tests: 7 Failed: 1)
Failed test: 7
Non-zero exit status: 1
t/02-statuscodes.t (Wstat: 1024 Tests: 6 Failed: 4)
Failed tests: 1-4
Non-zero exit status: 4
t/05-singledsn.t (Wstat: 2304 Tests: 33 Failed: 9)
Failed tests: 8-10, 19-21, 30-32
Non-zero exit status: 9
t/07-singledsn-multiseg.t (Wstat: 29440 Tests: 3 Failed: 1)
Failed test: 3
Non-zero exit status: 115
Parse errors: Bad plan. You planned 10 tests but ran 3.
t/10-multidsn.t (Wstat: 29440 Tests: 9 Failed: 2)
Failed tests: 8-9
Non-zero exit status: 115
Parse errors: Bad plan. You planned 11 tests but ran 9.
t/60-features_chunked.t (Wstat: 512 Tests: 0 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 1 tests but ran 0.
Files=22, Tests=116, 3 wallclock secs ( 0.06 usr 0.13 sys + 1.66 cusr 0.70 csys = 2.55 CPU)
Result: FAIL
Failed 6/22 test programs. 17/116 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
-------------- ---- --------
Carp 1.02 1.42
English 1.01 1.10
HTTP::Response 1.49 6.11
Readonly 1.03 2.05
WWW::Curl 4.07 4.17
build_requires:
Module Need Have
-------------- ---- --------
Test::More 0.8 1.302052
configure_requires:
Module Need Have
-------------- ---- --------
Module::Build 0.36 0.4220
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = C
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB = /home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/arch:/home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/lib:/home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/arch:/home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 32602
PERL5_CPAN_IS_RUNNING = 32602
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 32519,32602
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /run/user/1023/cpansmoker/2016090206/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
TERM = screen
TMPDIR = /run/user/1023/cpansmoker/2016090206
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /bbbike/perl-5.25.4t/bin/perl5.25.4
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- ----------
CPAN 2.14_01
CPAN::Meta 2.150010
Cwd 3.65
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.33
File::Spec 3.65
JSON 2.90
JSON::PP 2.27400_01
Module::Build 0.4220
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.36_01
Test::More 1.302052
YAML 1.18
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 25 subversion 4) configuration:
Platform:
osname=linux
osvers=3.16.0-4-amd64
archname=x86_64-linux-thread-multi
uname='linux eserte 3.16.0-4-amd64 #1 smp debian 3.16.7-ckt25-2+deb8u3 (2016-07-02) x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.25.4t -Dusedevel -Dusemallocwrap=no -Dusethreads -Dcf_email=srezic@cpan.org'
hint=recommended
useposix=true
d_sigaction=define
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='4.9.2'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.9/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.19.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
USE_64_BIT_ALL
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
USE_REENTRANT_API
Built under linux
Compiled at Aug 21 2016 17:15:08
%ENV:
PERL5LIB="/home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/arch:/home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/lib:/home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/arch:/home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="32602"
PERL5_CPAN_IS_RUNNING="32602"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="32519,32602"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/run/user/1023/cpansmoker/2016090206/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/arch
/home/cpansand/.cpan/build/2016090206/WWW-Curl-4.17-0/blib/lib
/home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/arch
/home/cpansand/.cpan/build/2016090206/Readonly-2.05-0/blib/lib
/opt/perl-5.25.4t/lib/site_perl/5.25.4/x86_64-linux-thread-multi
/opt/perl-5.25.4t/lib/site_perl/5.25.4
/opt/perl-5.25.4t/lib/5.25.4/x86_64-linux-thread-multi
/opt/perl-5.25.4t/lib/5.25.4
.