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From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-Draw-FeatureStack-0.03 v5.22.1 GNU/Linux
Date: 2017-05-24T12:39:47Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christian Frech,
This is a computer-generated report for Bio-Draw-FeatureStack-0.03
on perl 5.22.1, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/alt_feature.t ......... ok
t/basecase.t ............ ok
# Failed test 'Generation of feature_offset figures'
# at t/feature_offset.t line 19.
# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at /tmp/loop_over_bdir-11129-VRIIww/Bio-Draw-FeatureStack-0.03-0/blib/lib/Bio/Draw/FeatureStack.pm line 439.
# Looks like you planned 11 tests but ran 6.
# Looks like you failed 1 test of 6 run.
t/feature_offset.t ......
Dubious, test returned 1 (wstat 256, 0x100)
Failed 6/11 subtests
# Failed test 'Generation of manuscript figure 1'
# at t/figures_manuscript.t line 17.
# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at /tmp/loop_over_bdir-11129-VRIIww/Bio-Draw-FeatureStack-0.03-0/blib/lib/Bio/Draw/FeatureStack.pm line 439.
# Failed test 'Generation of manuscript figure 2'
# at t/figures_manuscript.t line 18.
# died: Can't locate object method "formatting" via package "GD::Font" at /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad/lib/site_perl/5.22.1/GD/SVG.pm line 996.
# Looks like you planned 27 tests but ran 15.
# Looks like you failed 2 tests of 15 run.
t/figures_manuscript.t ..
Dubious, test returned 2 (wstat 512, 0x200)
Failed 14/27 subtests
t/flip_minus.t .......... ok
t/genbank.t ............. ok
t/ignore_utr.t .......... ok
t/intron_size.t ......... ok
t/ruler.t ............... ok
t/seperator.t ........... ok
t/skip_transcript.t ..... ok
t/span.t ................ ok
Test Summary Report
-------------------
t/feature_offset.t (Wstat: 256 Tests: 6 Failed: 1)
Failed test: 6
Non-zero exit status: 1
Parse errors: Bad plan. You planned 11 tests but ran 6.
t/figures_manuscript.t (Wstat: 512 Tests: 15 Failed: 2)
Failed tests: 7-8
Non-zero exit status: 2
Parse errors: Bad plan. You planned 27 tests but ran 15.
Files=12, Tests=132, 46 wallclock secs ( 0.06 usr 0.06 sys + 8.83 cusr 2.33 csys = 11.28 CPU)
Result: FAIL
Failed 2/12 test programs. 3/132 subtests failed.
Makefile:846: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------------------ ---- --------
Bio::Graphics 2.02 2.40
Bio::Graphics::Glyph::decorated_gene 0 1.007001
GD::SVG 0.32 0.33
Test::Exception 0 0.43
build_requires:
Module Need Have
------------------------------------ ---- --------
ExtUtils::MakeMaker 0 7.24
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 11144
PERL5_CPAN_IS_RUNNING = 11144
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.18
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 1.20
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.28
File::Spec 3.62
JSON 2.92
JSON::PP 2.92
Module::Build 0.42_23
Module::Signature 0.81
Parse::CPAN::Meta 1.4422
Test::Harness 3.39
Test::More 1.302085
YAML 1.23
YAML::Syck 1.29
version 0.9918
--
Summary of my perl5 (revision 5 version 22 subversion 1) configuration:
Derived from: 0ab152a1d10861997fe3e1b985cc92f142f4cec7
Platform:
osname=linux, osvers=4.9.0-2-amd64, archname=x86_64-linux
uname='linux k93msid 4.9.0-2-amd64 #1 smp debian 4.9.18-1 (2017-03-30) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad -Dmyhostname=k93msid -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Uuseithreads -Uuselongdouble -DDEBUGGING=-g'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2 -g',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='6.3.0 20170406', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
PERL_USE_DEVEL USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_LOCALE_TIME
USE_PERLIO USE_PERL_ATOF
Locally applied patches:
uncommitted-changes
Built under linux
Compiled at Apr 17 2017 04:06:22
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="11144"
PERL5_CPAN_IS_RUNNING="11144"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad/lib/site_perl/5.22.1/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad/lib/site_perl/5.22.1
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad/lib/5.22.1/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/v5.22.1/89ad/lib/5.22.1
.