Bio-ToolBox v1.62 Perl 5 v5.18.4 amd64-freebsd
- Status
- Pass
- From
- Slaven Rezić (SREZIC)
- Dist
-
Bio-ToolBox v1.62
- Platform
- Perl 5 v5.18.4 amd64-freebsd
- Date
- 2018-09-05 03:37:43
- ID
- 0c3d99c4-b0bd-11e8-935f-cb34f163085d
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Timothy Parnell,
This is a computer-generated report for Bio-ToolBox-1.62
on perl 5.18.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
t/01.Data.t ............ ok
t/02.parser.t .......... ok
t/03.GeneTools.t ....... ok
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w- <-- HERE \.]+):([\w-\.]*)$/ at /usr/perl5.18.4p/lib/site_perl/5.18.4/Bio/DB/GFF/Typename.pm line 55.
False [] range "\w-" in regex; marked by <-- HERE in m/^([\w-\.]+):([\w- <-- HERE \.]*)$/ at /usr/perl5.18.4p/lib/site_perl/5.18.4/Bio/DB/GFF/Typename.pm line 55.
Subroutine Bio::DB::IndexedBase::_strip_crnl redefined at /usr/perl5.18.4p/lib/5.18.4/amd64-freebsd/DynaLoader.pm line 213.
t/04.DB.t .............. ok
t/05.Bam-HTS.t ......... skipped: Optional module Bio::DB::HTS not available
t/05.Bam-Samtools.t .... skipped: Optional module Bio::DB::Sam not available
t/06.BigBed-UCSC.t ..... skipped: Optional module Bio::DB::BigBed not available
t/06.BigBed-big.t ...... skipped: Optional module Bio::DB::Big not available
t/07.BigWig-UCSC.t ..... skipped: Optional module Bio::DB::BigWig not available
t/07.BigWig-big.t ...... skipped: Optional module Bio::DB::Big not available
t/08.BigWigSet-UCSC.t .. skipped: Optional module Bio::DB::BigWigSet not available
t/08.BigWigSet-big.t ... skipped: Optional module Bio::DB::Big not available
t/09.USeq.t ............ skipped: Optional module Bio::DB::USeq not available
t/10.Wiggle.t .......... skipped: Optional module Bio::Graphics not available
All tests successful.
Files=14, Tests=849, 4 wallclock secs ( 0.17 usr 0.02 sys + 2.76 cusr 0.66 csys = 3.61 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
----------------------- --------- --------
Bio::Root::Version 1.0069023 1.007002
Config::Simple 4.58 4.58
File::Which 0 1.22
Getopt::Long 2.24 2.5
List::Util 0 1.50
Module::Load 0 0.32
Statistics::Descriptive 3 3.0612
Statistics::Lite 3.2 3.62
build_requires:
Module Need Have
----------------------- --------- --------
Test::More 0 1.302136
configure_requires:
Module Need Have
----------------------- --------- --------
Module::Build 0 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 57477
PERL5_CPAN_IS_RUNNING = 57477
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 57292,57477
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2018090511/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
SHELL = /bin/sh
TMPDIR = /var/tmp/cpansmoker-1023/2018090511
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/perl5.18.4p/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.150010
Cwd 3.74
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.35
File::Spec 3.74
JSON 2.97001
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302136
YAML 1.26
YAML::Syck 1.30
version 0.9922
--
Summary of my perl5 (revision 5 version 18 subversion 4) configuration:
Platform:
osname=freebsd, osvers=12.0-current, archname=amd64-freebsd
uname='freebsd ali1.bbbike.org 12.0-current freebsd 12.0-current #0 bd8385a990e(master)-dirty: fri nov 17 03:13:11 utc 2017 root@ali1.bbbike.org:usrobjhomeprojectsfreebsdamd64.amd64sysgeneric-nodebug amd64 '
config_args='-ds -e -Dprefix=/usr/perl5.18.4p -Dcf_email=srezic@cpan.org -Doptimize=-O2 -pipe'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
optimize='-O2 -pipe',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible FreeBSD Clang 5.0.0 (tags/RELEASE_500/final 312559)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-pthread -Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib
libs=-lgdbm -lm -lcrypt -lutil -lc
perllibs=-lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_SAWAMPERSAND USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under freebsd
Compiled at Nov 17 2017 06:44:20
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="57477"
PERL5_CPAN_IS_RUNNING="57477"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="57292,57477"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2018090511/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
@INC:
/usr/perl5.18.4p/lib/site_perl/5.18.4/amd64-freebsd
/usr/perl5.18.4p/lib/site_perl/5.18.4
/usr/perl5.18.4p/lib/5.18.4/amd64-freebsd
/usr/perl5.18.4p/lib/5.18.4
.