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From: metabase:user:a0e144f2-373b-11e6-8edd-c6848980b093
Subject: FAIL Shatterproof-0.14 v5.25.6 GNU/Linux
Date: 2016-11-09T08:53:34Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Boutros Lab Software,
This is a computer-generated report for Shatterproof-0.14
on perl 5.25.6, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/home/cpan3/install/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
t/analyze_trans_data.t ............................. ok
ERROR: could not create file t/output/mutation_clustering/cnv/chr3_cnv_localization.log at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 1835.
# Looks like your test exited with 2 just after 1.
t/analyze_likely_regions.t .........................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 1/2 subtests
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
t/calculate_genome_localization.t .................. ok
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
t/calculate_interchromosomal_translocation_rate.t .. ok
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
t/check_copy_number_count.t ........................ ok
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
t/check_copy_number_switches.t ..................... ok
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 429.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 430.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 432.
given is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3897.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3898.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3899.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3900.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3901.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3902.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3903.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3904.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3905.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3906.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3907.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3908.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3909.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3910.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3911.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3912.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3913.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3914.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3915.
when is experimental at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 3916.
t/standard_deviation_and_mean.t .................... ok
read() on closed filehandle $test_file at /home/cpan3/install/lib/perl5/5.25.6/File/Compare.pm line 88.
# Failed test 'analyze_cnv_data-1-4-file-valid_input-no_tp53'
# at t/analyze_cnv_data.t line 63.
ERROR: could not create folder t/output/TP53
# Looks like your test exited with 2 just after 10.
t/analyze_cnv_data.t ...............................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 3/12 subtests
ERROR: could not create file t/output/mutation_clustering/cnv/chr19_cnv_localization.log at /home/cpan3/.cpan/build/Shatterproof-0.14-0/blib/lib/Shatterproof.pm line 1835.
# Looks like your test exited with 2 just after 1.
t/calculate_chromosome_localization.t ..............
Dubious, test returned 2 (wstat 512, 0x200)
Failed 14/15 subtests
Test Summary Report
-------------------
t/analyze_likely_regions.t (Wstat: 512 Tests: 1 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 2 tests but ran 1.
t/analyze_cnv_data.t (Wstat: 512 Tests: 10 Failed: 1)
Failed test: 5
Non-zero exit status: 2
Parse errors: Bad plan. You planned 12 tests but ran 10.
t/calculate_chromosome_localization.t (Wstat: 512 Tests: 1 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 15 tests but ran 1.
Files=9, Tests=47, 2 wallclock secs ( 0.05 usr 0.01 sys + 7.00 cusr 0.18 csys = 7.24 CPU)
Result: FAIL
Failed 3/9 test programs. 1/47 subtests failed.
Makefile:853: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 2
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------- ---- --------
File::Basename 2 2.85
JSON::XS 2.3 3.02
List::Util 1 1.46
POSIX 1 1.73
Statistics::Distributions 1.02 1.02
Test::Deep 0 1.123
Test::Exception 0 0.43
Test::More 0 1.302062
build_requires:
Module Need Have
------------------------- ---- --------
ExtUtils::MakeMaker 0 7.24
configure_requires:
Module Need Have
------------------------- ---- --------
ExtUtils::MakeMaker 0 7.24
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j3
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 17566
PERL5_CPAN_IS_RUNNING = 17566
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 7970,17566
PERLBREW_BASHRC_VERSION = 0.76
PERLBREW_HOME = /home/dcollins/.perlbrew
PERLBREW_ROOT = /home/dcollins/toolchain/perl5
PERL_CR_SMOKER_CURRENT = Shatterproof-0.14
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = putty
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/cpan3/install/bin/perl
$UID/$EUID = 1004 / 1004
$GID = 1004 1004
$EGID = 1004 1004
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.14
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4220
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.36
Test::More 1.302062
YAML 1.18
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 25 subversion 6) configuration:
Commit id: 11a12be6c2df2fcd9601f9fde8c7df8c7538c956
Platform:
osname=linux
osvers=3.16.0-4-amd64
archname=x86_64-linux-thread-multi
uname='linux digitalis 3.16.0-4-amd64 #1 smp debian 3.16.36-1+deb8u1 (2016-09-03) x86_64 gnulinux '
config_args='-Dusedevel -DDEBUGGING -Dusethreads -Dprefix=/home/cpan3/install -Uversiononly -des'
hint=recommended
useposix=true
d_sigaction=define
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2 -g'
cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -DDEBUGGING -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='4.9.2'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.9/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.19.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
DEBUGGING
HAS_TIMES
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_TRACK_MEMPOOL
PERL_USE_DEVEL
USE_64_BIT_ALL
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
USE_REENTRANT_API
Built under linux
Compiled at Oct 30 2016 10:43:21
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="17566"
PERL5_CPAN_IS_RUNNING="17566"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="7970,17566"
PERLBREW_BASHRC_VERSION="0.76"
PERLBREW_HOME="/home/dcollins/.perlbrew"
PERLBREW_ROOT="/home/dcollins/toolchain/perl5"
PERL_CR_SMOKER_CURRENT="Shatterproof-0.14"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/cpan3/install/lib/perl5/site_perl/5.25.6/x86_64-linux-thread-multi
/home/cpan3/install/lib/perl5/site_perl/5.25.6
/home/cpan3/install/lib/perl5/5.25.6/x86_64-linux-thread-multi
/home/cpan3/install/lib/perl5/5.25.6
.