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From: metabase:user:322078bc-2aae-11df-837a-5e0a49663a4f
Subject: NA Bio-VertRes-Config-1.133090 v5.8.9 Debian GNU/kFreeBSD
Date: 2013-11-07T04:49:32Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear AJPAGE,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9142. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
PERL_DL_NONLAZY=1 /home/cpan/pit/bare/perl-5.8.9/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/Bio/VertRes/Config/*.t t/Bio/VertRes/Config/CommandLine/*.t t/Bio/VertRes/Config/Pipelines/*.t t/Bio/VertRes/Config/Recipes/*.t t/bin/*.t
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/bacteria_assembly_and_annotation.t ........................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/bacteria_assembly_single_cell.t .............................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/bacteria_mapping.t ........................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/bacteria_register_and_qc_study.t ............................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/bacteria_rna_seq_expression.t ................................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/bacteria_snp_calling.t ....................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/eukaryote_assembly.t ......................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/eukaryote_mapping.t .......................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/eukaryote_register_and_qc_study.t ............................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/eukaryote_rna_seq_expression.t ............................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/eukaryote_snp_calling.t ...................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/helminth_mapping.t ........................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/helminth_register_and_qc_study.t ............................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/helminth_rna_seq_expression.t ................................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/helminth_snp_calling.t ....................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
# Failed test 'log file has been created for bacteria_assembly_and_annotation'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_assembly_single_cell'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_assembly'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for setup_global_configs'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_assembly_and_annotation'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Looks like you failed 42 tests of 42.
t/bin/log_parameters.t .............................................
Dubious, test returned 42 (wstat 10752, 0x2a00)
Failed 42/42 subtests
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
# Failed test 'files created as expected for ./bin/setup_global_configs -d pathogen_euk_track -c /tmp/iRiXQMW0tV -l t/data/refs.index'
# at t/lib/TestHelper.pm line 25.
# Structures begin differing at:
# $got->[0] = Does not exist
# $expected->[0] = 'command_line.log'
# Failed test 'files created as expected for ./bin/setup_global_configs -d some_other_db_name -c /tmp/5IHzbyfgMS -l t/data/refs.index'
# at t/lib/TestHelper.pm line 25.
# Structures begin differing at:
# $got->[0] = Does not exist
# $expected->[0] = 'command_line.log'
# Looks like you failed 2 tests of 2.
t/bin/setup_global_configs.t .......................................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/2 subtests
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/virus_assembly_and_annotation.t .............................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/virus_mapping.t .............................................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/virus_register_and_qc_study.t ................................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/virus_rna_seq_expression.t ................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/bin/virus_snp_calling.t .......................................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/CommandLine/Common.t .......................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/CommandLine/ConstructLimits.t ................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/CommandLine/LogParameters.t ................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/CommandLine/StudyNameSearch.t ................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/MultipleTopLevelFiles.t ....................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/AnnotateAssembly.t .................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/Assembly.t .......................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/BamImprovement.t .................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/Bowtie2Mapping.t .................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/BwaMapping.t ........................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/Common.t ............................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/Import.t ............................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/Mapping.t ........................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/QC.t ................................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/RnaSeqExpression.t .................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/SmaltMapping.t ...................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/SnpCalling.t ........................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/SpadesAssembly.t .................... ok
t/Bio/VertRes/Config/Pipelines/Ssaha2Mapping.t ..................... ok
t/Bio/VertRes/Config/Pipelines/StampyMapping.t ..................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/Store.t ............................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/Tradis.t ............................ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Pipelines/VelvetAssembly.t .................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/BacteriaAssemblyAndAnnotation.t ....... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/BacteriaAssemblySingleCell.t .......... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/BacteriaRegisterAndQCStudy.t .......... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/BacteriaRnaSeqExpressionUsingBwa.t .... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/BacteriaRnaSeqExpressionUsingSmalt.t .. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/BacteriaSnpCallingUsingBwa.t .......... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/BacteriaSnpCallingUsingSmalt.t ........ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesAssembly.t .................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingBwa.t ........... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingSmalt.t ......... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingSsaha2.t ........ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingStampy.t ........ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesRegisterAndQCStudy.t ........ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesRnaSeqExpression.t .......... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingBwa.t ........ ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingSmalt.t ...... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingSsaha2.t ..... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingStampy.t ..... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/Global.t .............................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/HelminthRegisterAndQCStudy.t .......... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/VirusAssemblyAndAnnotation.t .......... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/Recipes/VirusRegisterAndQCStudy.t ............. ok
t/Bio/VertRes/Config/References.t .................................. ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/RegisterStudy.t ............................... ok
Subroutine File::Slurp::O_CREAT redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 89.
Subroutine File::Slurp::O_EXCL redefined at /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib/File/Slurp.pm line 90.
t/Bio/VertRes/Config/TopLevel.t .................................... ok
Test Summary Report
-------------------
t/bin/log_parameters.t (Wstat: 10752 Tests: 42 Failed: 42)
Failed tests: 1-42
Non-zero exit status: 42
t/bin/setup_global_configs.t (Wstat: 512 Tests: 2 Failed: 2)
Failed tests: 1-2
Non-zero exit status: 2
Files=70, Tests=802, 160 wallclock secs ( 0.30 usr 0.78 sys + 97.00 cusr 48.55 csys = 146.63 CPU)
Result: FAIL
Failed 2/70 test programs. 44/802 subtests failed.
make: *** [test_dynamic] Error 255
[MSG] [Thu Nov 7 04:49:31 2013] 'Bio::VertRes::Config' requires a higher version of perl than your current version -- sending N/A grade.
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
DBI 1.630 0
Data::Dumper 2.121_17 0
Exception::Class 1.37 0
File::Basename 2.77 0
File::Find 1.13 0
File::Path 2.07_02 0
File::Slurp 9999.19 0
File::Temp 0.2302 0
Getopt::Long 2.37 0
Moose 2.1005 0
Moose::Role 2.1005 0
Moose::Util::TypeConstraints 2.1005 0
Test::Most 0.31 0
strict 1.03 0
warnings 1.05_01 0
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9142
CPANPLUS::Dist::Build 0.74
Cwd 3.40
ExtUtils::CBuilder 0.280212
ExtUtils::Command 1.16
ExtUtils::Install 1.54
ExtUtils::MakeMaker 6.78
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.22
File::Spec 3.40
Module::Build 0.4007
Pod::Parser 1.35
Pod::Simple 3.28
Test::Harness 3.28
Test::More 0.98
version 0.9904
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.90.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB.UTF-8
LANGUAGE = en_GB:en
NONINTERACTIVE_TESTING = 1
PATH = /home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-VertRes-Config-1.133090/blib/script:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/script:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/script:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/DBI-1.630/blib/script:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5LIB = :/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/DBI-1.630/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/DBI-1.630/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/List-MoreUtils-0.33/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/List-MoreUtils-0.33/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Runtime-0.013/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Runtime-0.013/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Try-Tiny-0.18/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Try-Tiny-0.18/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Fatal-0.013/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Fatal-0.013/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Dist-CheckConflicts-0.09/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Dist-CheckConflicts-0.09/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-2.132830/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-2.132830/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-Check-0.008/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-Check-0.008/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Params-Util-1.07/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Params-Util-1.07/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Install-0.927/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Install-0.927/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-OptList-0.108/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-OptList-0.108/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Requires-0.07/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Requires-0.07/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Implementation-0.07/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Implementation-0.07/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-XS-0.28/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-XS-0.28/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-0.20/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-0.20/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-XS-0.06/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-XS-0.06/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-XS-0.01/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-XS-0.01/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Eval-Closure-0.11/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Eval-Closure-0.11/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-C3-0.08/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-C3-0.08/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-XS-0.13/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-XS-0.13/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-Hide-0.0009/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-Hide-0.0009/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-0.25/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-C3-0.25/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/MRO-Compat-0.12/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/MRO-Compat-0.12/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-DeprecationManager-0.13/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-DeprecationManager-0.13/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-0.987/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-0.987/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Name-0.05/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Name-0.05/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Task-Weaken-1.04/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Task-Weaken-1.04/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-CheckDeps-0.010/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-CheckDeps-0.010/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Moose-2.1005/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Dumper-2.145/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-Dumper-2.145/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-Diff-1.1902/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Algorithm-Diff-1.1902/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-Diff-1.41/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Text-Diff-1.41/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Differences-0.61/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Differences-0.61/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Uplevel-0.24/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Uplevel-0.24/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Exception-0.32/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Exception-0.32/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Tree-DAG_Node-1.18/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Tree-DAG_Node-1.18/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Warn-0.24/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Warn-0.24/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Most-0.31/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Most-0.31/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-VertRes-Config-1.133090/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Bio-VertRes-Config-1.133090/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 49806
PERL5_CPANPLUS_IS_VERSION = 0.9142
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /home/cpan/pit/bare/conf/perl-5.8.9
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /home/cpan/pit/bare/perl-5.8.9/bin/perl
UID: $< = 1001
EUID: $> = 1001
GID: $( = 1001 1001
EGID: $) = 1001 1001
-------------------------------
--
Summary of my perl5 (revision 5 version 8 subversion 9) configuration:
Platform:
osname=gnukfreebsd, osvers=9.0-2-686, archname=i386-gnukfreebsd
uname='gnukfreebsd knurl 9.0-2-686 #0 sat nov 24 07:40:35 utc 2012 i386 i386 amd a6-3670 apu with radeon(tm) hd graphics gnukfreebsd '
config_args='-des -Dprefix=/home/cpan/pit/bare/perl-5.8.9'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=undef use64bitall=undef uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.7.2', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/i386-kfreebsd-gnu /lib /usr/lib/i386-kfreebsd-gnu /usr/lib
libs=-lnsl -lgdbm -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -O2 -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: PERL_MALLOC_WRAP USE_FAST_STDIO USE_LARGE_FILES
USE_PERLIO
Built under gnukfreebsd
Compiled at Feb 25 2013 12:14:33
%ENV:
PERL5LIB=":/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/DBI-1.630/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/DBI-1.630/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Data-Inheritable-0.08/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-StackTrace-1.30/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Exception-Class-1.37/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/File-Slurp-9999.19/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/List-MoreUtils-0.33/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/List-MoreUtils-0.33/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Runtime-0.013/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Runtime-0.013/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Try-Tiny-0.18/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Try-Tiny-0.18/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Fatal-0.013/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Fatal-0.013/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Dist-CheckConflicts-0.09/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Dist-CheckConflicts-0.09/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-2.132830/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-2.132830/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Tester-0.109/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-NoWarnings-1.04/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Deep-0.110/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-Check-0.008/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/CPAN-Meta-Check-0.008/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Carp-1.32/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Params-Util-1.07/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Params-Util-1.07/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Install-0.927/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Install-0.927/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-OptList-0.108/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Data-OptList-0.108/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Requires-0.07/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Test-Requires-0.07/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Implementation-0.07/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Module-Implementation-0.07/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-XS-0.28/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-XS-0.28/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Package-Stash-0.36/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-0.20/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-0.20/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-XS-0.06/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Class-Load-XS-0.06/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-XS-0.01/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-XS-0.01/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Sub-Exporter-Progressive-0.001011/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/lib:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Devel-GlobalDestruction-0.12/blib/arch:/home/cpan/pit/bare/conf/perl-5.8.9/.cpanplus/5.8.9/build/Eva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PERL5_CPANPLUS_IS_RUNNING="49806"
PERL5_CPANPLUS_IS_VERSION="0.9142"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/home/cpan/pit/bare/conf/perl-5.8.9"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
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