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From: metabase:user:322078bc-2aae-11df-837a-5e0a49663a4f
Subject: FAIL BioPerl-Run-1.007000 v5.14.2 NetBSD
Date: 2016-12-18T11:13:12Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear CJFIELDS,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9160. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
# Required executable for Bio::Tools::Run::Alignment::Amap is not present
t/Amap.t ...................... ok
t/AnalysisFactory_soap.t ...... skipped: Network tests have not been requested
t/Analysis_soap.t ............. skipped: Network tests have not been requested
t/BEDTools.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
t/BWA.t ....................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Alignment::Blat is not present
t/Blat.t ...................... ok
t/Bowtie.t .................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Cap3 is not present
t/Cap3.t ...................... ok
# Required executable for Bio::Tools::Run::Alignment::Clustalw is not present
t/Clustalw.t .................. ok
# Required executable for Bio::Tools::Run::Coil is not present
t/Coil.t ...................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::Consense is not present
t/Consense.t .................. ok
# Required executable for Bio::Tools::Run::Alignment::DBA is not present
t/DBA.t ....................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::DrawGram is not present
t/DrawGram.t .................. ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::DrawTree is not present
t/DrawTree.t .................. ok
t/EMBOSS.t .................... skipped: The optional module XML::Twig (or dependencies thereof) was not installed
t/Ensembl.t ................... skipped: Network tests have not been requested
# Looks like you planned 7 tests but ran 2.
t/Eponine.t ...................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 5/7 subtests
# Required executable for Bio::Tools::Run::Alignment::Exonerate is not present
t/Exonerate.t ................. ok
# Required executable for Bio::Tools::Run::Phylo::FastTree is not present
t/FastTree.t .................. ok
# Required executable for Bio::Tools::Run::FootPrinter is not present
t/FootPrinter.t ............... ok
t/Genemark.hmm.prokaryotic.t .. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Genewise is not present
t/Genewise.t .................. ok
# Required environment variable $GENSCANDIR is not set
t/Genscan.t ................... ok
# Required executable for Bio::Tools::Run::Phylo::Gerp is not present
t/Gerp.t ...................... ok
t/Glimmer2.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
t/Glimmer3.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Failed test 'use Bio::Tools::Run::Phylo::Gumby;'
# at t/Gumby.t line 10.
# Tried to use 'Bio::Tools::Run::Phylo::Gumby'.
# Error: Can't locate Bio/SeqFeature/Annotated.pm in @INC (@INC contains: /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/arch /home/cpan/pit/bare/perl-5.14.2/lib/site_perl/5.14.2/amd64-netbsd /home/cpan/pit/bare/perl-5.14.2/lib/site_perl/5.14.2 /home/cpan/pit/bare/perl-5.14.2/lib/5.14.2/amd64-netbsd /home/cpan/pit/bare/perl-5.14.2/lib/5.14.2 .) at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/lib/Bio/Tools/Phylo/Gumby.pm line 83.
# BEGIN failed--compilation aborted at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/lib/Bio/Tools/Phylo/Gumby.pm line 83.
# Compilation failed in require at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/Phylo/Gumby.pm line 142.
# BEGIN failed--compilation aborted at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/Phylo/Gumby.pm line 142.
# Compilation failed in require at t/Gumby.t line 10.
# BEGIN failed--compilation aborted at t/Gumby.t line 10.
Can't locate object method "new" via package "Bio::Tools::Run::Phylo::Gumby" at t/Gumby.t line 25.
# Looks like your test exited with 255 just after 8.
t/Gumby.t .....................
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 117/124 subtests
# Required executable for Bio::Tools::Run::Hmmer is not present
t/Hmmer.t ..................... ok
# Required executable for Bio::Tools::Run::Phylo::Hyphy::REL is not present
t/Hyphy.t ..................... ok
# Required executable for Bio::Tools::Run::Infernal is not present
t/Infernal.t .................. ok
# Required executable for Bio::Tools::Run::Alignment::Kalign is not present
t/Kalign.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::LVB is not present
t/LVB.t ....................... ok
# Required executable for Bio::Tools::Run::Alignment::Lagan is not present
t/Lagan.t ..................... ok
# Required executable for Bio::Tools::Run::Alignment::MAFFT is not present
t/MAFFT.t ..................... ok
t/MCS.t ....................... skipped: The optional module Config::Any (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Alignment::MSAProbs is not present
t/MSAProbs.t .................. ok
t/Maq.t ....................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
t/Match.t ..................... skipped: The optional module Config::Any (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Mdust is not present
t/Mdust.t ..................... ok
# Required executable for Bio::Tools::Run::Meme is not present
t/Meme.t ...................... ok
t/Minimo.t .................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Phylo::Molphy::ProtML is not present
t/Molphy.t .................... ok
# Required executable for Bio::Tools::Run::Alignment::Muscle is not present
t/Muscle.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::Neighbor is not present
t/Neighbor.t .................. ok
t/Newbler.t ................... skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Phylo::Njtree::Best is not present
t/Njtree.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::PAML::Codeml is not present
t/PAML.t ...................... ok
# Required executable for Bio::Tools::Run::Alignment::Pal2Nal is not present
t/Pal2Nal.t ................... ok
t/PhastCons.t ................. skipped: The optional module Clone (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Phrap is not present
t/Phrap.t ..................... ok
# Required executable for Bio::Tools::Run::Phylo::Phyml is not present
t/Phyml.t ..................... ok
# Required executable for Bio::Tools::Run::Primate is not present
t/Primate.t ................... ok
t/Primer3.t ................... skipped: The optional module Clone (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Prints is not present
t/Prints.t .................... ok
# Required executable for Bio::Tools::Run::Alignment::Probalign is not present
t/Probalign.t ................. ok
# Required executable for Bio::Tools::Run::Alignment::Probcons is not present
t/Probcons.t .................. ok
# Required executable for Bio::Tools::Run::Profile is not present
t/Profile.t ................... ok
# Required executable for Bio::Tools::Run::Promoterwise is not present
t/Promoterwise.t .............. ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::ProtDist is not present
t/ProtDist.t .................. ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::ProtPars is not present
t/ProtPars.t .................. ok
# Required executable for Bio::Tools::Run::Pseudowise is not present
t/Pseudowise.t ................ ok
# Required executable for Bio::Tools::Run::Phylo::QuickTree is not present
t/QuickTree.t ................. ok
# Required executable for Bio::Tools::Run::Phylo::Raxml is not present
t/Raxml.t ..................... ok
# Required executable for Bio::Tools::Run::RepeatMasker is not present
t/RepeatMasker.t .............. ok
# Failed test 'use Bio::Tools::Run::StandAloneBlastPlus;'
# at t/SABlastPlus.t line 15.
# Tried to use 'Bio::Tools::Run::StandAloneBlastPlus'.
# Error: Can't locate IPC/Run.pm in @INC (@INC contains: ../../.. ../../../../5.14.2 ../../../.. ../lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/arch /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/lib /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/arch /home/cpan/pit/bare/perl-5.14.2/lib/site_perl/5.14.2/amd64-netbsd /home/cpan/pit/bare/perl-5.14.2/lib/site_perl/5.14.2 /home/cpan/pit/bare/perl-5.14.2/lib/5.14.2/amd64-netbsd /home/cpan/pit/bare/perl-5.14.2/lib/5.14.2 .) at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm line 417.
# BEGIN failed--compilation aborted at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm line 417.
# Compilation failed in require at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/BlastPlus.pm line 84.
# BEGIN failed--compilation aborted at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/BlastPlus.pm line 84.
# Compilation failed in require at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm line 174.
# BEGIN failed--compilation aborted at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm line 174.
# Compilation failed in require at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm line 427.
# BEGIN failed--compilation aborted at /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib/Bio/Tools/Run/StandAloneBlastPlus.pm line 427.
# Compilation failed in require at t/SABlastPlus.t line 15.
# BEGIN failed--compilation aborted at t/SABlastPlus.t line 15.
# Failed test 'use Bio::Tools::Run::WrapperBase::CommandExts;'
# at t/SABlastPlus.t line 17.
# Tried to use 'Bio::Tools::Run::WrapperBase::CommandExts'.
# Error: Attempt to reload Bio/Tools/Run/WrapperBase/CommandExts.pm aborted.
# Compilation failed in require at t/SABlastPlus.t line 17.
# BEGIN failed--compilation aborted at t/SABlastPlus.t line 17.
Can't locate object method "new" via package "Bio::Tools::Run::BlastPlus" at t/SABlastPlus.t line 21.
# Looks like your test exited with 255 just after 3.
t/SABlastPlus.t ...............
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 72/73 subtests
# Required executable for Bio::Tools::Run::Phylo::SLR is not present
t/SLR.t ....................... ok
t/Samtools.t .................. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Seg is not present
t/Seg.t ....................... ok
# Required executable for Bio::Tools::Run::Phylo::Semphy is not present
t/Semphy.t .................... ok
# Required executable for Bio::Tools::Run::Phylo::Phylip::SeqBoot is not present
t/SeqBoot.t ................... ok
# Required executable for Bio::Tools::Run::Signalp is not present
t/Signalp.t ................... ok
# Required executable for Bio::Tools::Run::Alignment::Sim4 is not present
t/Sim4.t ...................... ok
# Required executable for Bio::Tools::Run::Simprot is not present
t/Simprot.t ................... ok
t/SoapEU-function.t ........... skipped: The optional module Bio::DB::ESoap (or dependencies thereof) was not installed
t/SoapEU-unit.t ............... skipped: The optional module Bio::DB::ESoap (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Alignment::StandAloneFasta is not present
t/StandAloneFasta.t ........... ok
# Required executable for Bio::Tools::Run::Alignment::TCoffee is not present
t/TCoffee.t ................... ok
t/TigrAssembler.t ............. skipped: The optional module IPC::Run (or dependencies thereof) was not installed
# Required executable for Bio::Tools::Run::Tmhmm is not present
t/Tmhmm.t ..................... ok
t/TribeMCL.t .................. ok
t/Vista.t ..................... ok
# Required executable for Bio::Tools::Run::Alignment::Gmap is not present
t/gmap-run.t .................. ok
t/tRNAscanSE.t ................ skipped: The optional module IPC::Run (or dependencies thereof) was not installed
Test Summary Report
-------------------
t/Eponine.t (Wstat: 65280 Tests: 2 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 7 tests but ran 2.
t/Gumby.t (Wstat: 65280 Tests: 8 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 124 tests but ran 8.
t/SABlastPlus.t (Wstat: 65280 Tests: 3 Failed: 2)
Failed tests: 1, 3
Non-zero exit status: 255
Parse errors: Bad plan. You planned 73 tests but ran 3.
Files=83, Tests=1187, 21 wallclock secs ( 0.36 usr 0.14 sys + 12.67 cusr 8.30 csys = 21.47 CPU)
Result: FAIL
Failed 3/83 test programs. 3/1187 subtests failed.
BEGIN failed--compilation aborted at -e line 1.
MISSING PREREQUISITES:
It was observed that the test suite seem to fail without these modules:
Bio::SeqFeature::Annotated
IPC::Run
As such, adding the prerequisite module(s) to 'PREREQ_PM' in your
Makefile.PL should solve this problem. For example:
WriteMakefile(
AUTHOR => 'CJFIELDS (cpanplus-info@lists.sf.net)',
... # other information
PREREQ_PM => {
'Bio::SeqFeature::Annotated' => '0', # or a minimum working version
'IPC::Run' => '0', # or a minimum working version
}
);
Thanks! :-)
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Bio::Root::Root 0 0
Bio::Root::Test 0 0
Bio::Root::Version 1.007001 1.007000
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9160
CPANPLUS::Dist::Build 0.80
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
Module::Build 0.4220
Pod::Parser 1.37
Pod::Simple 3.16
Test2 1.302062
Test::Harness 3.36
Test::More 1.302062
version 0.9917
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.98.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/script:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/script:/home/cpan/bin:/bin:/sbin:/usr/bin:/usr/sbin:/usr/X11R7/bin:/usr/X11R6/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/bin:/usr/local/sbin
PERL5LIB = :/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 2114
PERL5_CPANPLUS_IS_VERSION = 0.9160
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /home/cpan/pit/bare/conf/perl-5.14.2
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/pkg/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /home/cpan/pit/bare/perl-5.14.2/bin/perl
UID: $< = 1002
EUID: $> = 1002
GID: $( = 100 100
EGID: $) = 100 100
-------------------------------
--
Summary of my perl5 (revision 5 version 14 subversion 2) configuration:
Platform:
osname=netbsd, osvers=6.1.4, archname=amd64-netbsd
uname='netbsd naboo.bingosnet.co.uk 6.1.4 netbsd 6.1.4 (generic) amd64 '
config_args='-des -Dprefix=/home/cpan/pit/bare/perl-5.14.2'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/pkg/include',
optimize='-O',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/pkg/include'
ccversion='', gccversion='4.5.3', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib -fstack-protector -L/usr/pkg/lib'
libpth=/usr/pkg/lib /lib /usr/lib
libs=-lgdbm -lm -lcrypt -lutil -lc -lposix
perllibs=-lm -lcrypt -lutil -lc -lposix
libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E '
cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared -L/usr/pkg/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: PERL_DONT_CREATE_GVSV PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
Built under netbsd
Compiled at May 9 2014 14:56:56
%ENV:
PERL5LIB=":/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/A9X04JTqvW/Class-Data-Inheritable-0.08/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/7PzjXPO8K2/Devel-StackTrace-2.02/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/ZGrXnXf6zR/Exception-Class-1.41/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/gW321QbjYT/Test-Deep-1.124/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Fd5Q6126Ic/Capture-Tiny-0.44/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/2PY489xyeF/Algorithm-Diff-1.1903/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/VuVJysJ76n/Text-Diff-1.44/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/MUbOHLX68C/Test-Differences-0.64/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/sRDyzKRd02/Sub-Uplevel-0.2600/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/TMC8OOT8mX/Test-Exception-0.43/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/Us9F79yDEx/Carp-1.38/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/4gbeeSpFN3/Test-Warn-0.31/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/3g63Dllrw2/Test-Most-0.35/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/pKeZfPpE1n/URI-1.71/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/V6wtORtQL8/BioPerl-1.007001/blib/arch:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/lib:/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/arch"
PERL5_CPANPLUS_IS_RUNNING="2114"
PERL5_CPANPLUS_IS_VERSION="0.9160"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/home/cpan/pit/bare/conf/perl-5.14.2"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/lib
/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/8_PyWY7NsS/IO-String-1.08/blib/arch
/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/lib
/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/38D12h1D8G/Data-Stag-0.14/blib/arch
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/home/cpan/pit/bare/conf/perl-5.14.2/.cpanplus/5.14.2/build/WvEiBxsnJU/BioPerl-Run-1.007000/blib/arch
/home/cpan/pit/bare/perl-5.14.2/lib/site_perl/5.14.2/amd64-netbsd
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/home/cpan/pit/bare/perl-5.14.2/lib/5.14.2/amd64-netbsd
/home/cpan/pit/bare/perl-5.14.2/lib/5.14.2
.