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From: metabase:user:30977d10-2aae-11df-837a-5e0a49663a4f
Subject: UNKNOWN Bio-SCF-1.03 v5.8.9 GNU/Linux
Date: 2011-08-04T21:37:32Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Lincoln D. Stein,
This is a computer-generated report for Bio-SCF-1.03
on perl 5.8.9, created by CPAN-Reporter-1.1902.
Thank you for uploading your work to CPAN. However, attempting to
test your distribution gave an inconclusive result.
This could be because your distribution had an error during the make/build
stage, did not define tests, tests could not be found, because your tests were
interrupted before they finished, or because the results of the tests could not
be parsed. You may wish to consult the CPAN Testers Wiki:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make':
cp SCF.pm blib/lib/Bio/SCF.pm
cp SCF/Arrays.pm blib/lib/Bio/SCF/Arrays.pm
/home/trushel/perl/perl589m/bin/perl /home/trushel/perl/perl589m/lib/5.8.9/ExtUtils/xsubpp -typemap /home/trushel/perl/perl589m/lib/5.8.9/ExtUtils/typemap SCF.xs > SCF.xsc && mv SCF.xsc SCF.c
Please specify prototyping behavior for SCF.xs (see perlxs manual)
cc -c -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -DVERSION=\"1.03\" -DXS_VERSION=\"1.03\" -fPIC "-I/home/trushel/perl/perl589m/lib/5.8.9/x86_64-linux-multi/CORE" -DLITTLE_ENDIAN SCF.c
SCF.xs:12:24: error: io_lib/scf.h: No such file or directory
SCF.xs:13:26: error: io_lib/mFILE.h: No such file or directory
SCF.xs: In function âXS_Bio__SCF_get_scf_pointerâ:
SCF.xs:27: error: âScfâ undeclared (first use in this function)
SCF.xs:27: error: (Each undeclared identifier is reported only once
SCF.xs:27: error: for each function it appears in.)
SCF.xs:27: error: âscf_dataâ undeclared (first use in this function)
SCF.xs: In function âXS_Bio__SCF_get_scf_fpointerâ:
SCF.xs:66: error: âScfâ undeclared (first use in this function)
SCF.xs:66: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:68: error: âmFILEâ undeclared (first use in this function)
SCF.xs:68: error: âmfâ undeclared (first use in this function)
SCF.xs: In function âXS_Bio__SCF_scf_freeâ:
SCF.xs:89: error: âScfâ undeclared (first use in this function)
SCF.xs:89: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_get_commentsâ:
SCF.xs:95: error: âScfâ undeclared (first use in this function)
SCF.xs:95: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:95: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_set_commentsâ:
SCF.xs:108: error: âScfâ undeclared (first use in this function)
SCF.xs:108: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:108: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_scf_writeâ:
SCF.xs:121: error: âScfâ undeclared (first use in this function)
SCF.xs:121: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:121: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_scf_fwriteâ:
SCF.xs:135: error: âmFILEâ undeclared (first use in this function)
SCF.xs:135: error: âmfâ undeclared (first use in this function)
SCF.xs:137: error: âScfâ undeclared (first use in this function)
SCF.xs:137: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:137: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_get_from_headerâ:
SCF.xs:159: error: âScfâ undeclared (first use in this function)
SCF.xs:159: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:159: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_get_atâ:
SCF.xs:186: error: âScfâ undeclared (first use in this function)
SCF.xs:186: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:186: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_set_base_atâ:
SCF.xs:242: error: âScfâ undeclared (first use in this function)
SCF.xs:242: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:242: error: expected expression before â)â token
SCF.xs: In function âXS_Bio__SCF_set_atâ:
SCF.xs:255: error: âScfâ undeclared (first use in this function)
SCF.xs:255: error: âscf_dataâ undeclared (first use in this function)
SCF.xs:255: error: expected expression before â)â token
make: *** [SCF.o] Error 1
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
build_requires:
Module Need Have
------------------- ---- ----
ExtUtils::MakeMaker 0 6.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en
LC_COLLATE = C
LC_MONETARY = C
LC_NUMERIC = C
LC_TIME = C
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 4191
PERL5_CPAN_IS_EXECUTING = /home/trushel/cpan/build/5.8.9-m/Bio-SCF-1.03-92QKSE/Makefile.PL
PERL5_CPAN_IS_RUNNING = 4191
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 2687,4191
PERL_AUTOINSTALL = --defaultdeps
PERL_CR_SMOKER_CURRENT = Bio-SCF-1.03
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/trushel/perl/perl589m/bin/perl
$UID/$EUID = 138375 / 138375
$GID = 5762 4 20 21 24 25 26 30 44 46 104 105 119 122 431 5762
$EGID = 5762 4 20 21 24 25 26 30 44 46 104 105 119 122 431 5762
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.97_51
Cwd 3.33
ExtUtils::CBuilder 0.280202
ExtUtils::Command 1.16
ExtUtils::Install 1.54
ExtUtils::MakeMaker 6.58
ExtUtils::Manifest 1.58
ExtUtils::ParseXS 2.2206
File::Spec 3.33
Module::Build 0.3800
Module::Signature n/a
Test::Harness 3.23
Test::More 0.98
YAML 0.73
YAML::Syck 1.17
version 0.93
--
Summary of my perl5 (revision 5 version 8 subversion 9) configuration:
Platform:
osname=linux, osvers=2.6.32-33-generic, archname=x86_64-linux-multi
uname='linux trushel-glaptop 2.6.32-33-generic #70-ubuntu smp thu jul 7 21:13:52 utc 2011 x86_64 gnulinux '
config_args=''
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=define
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.4.3', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib /lib64 /usr/lib64
libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=/lib/libc-2.11.1.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.11.1'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
USE_64_BIT_ALL USE_64_BIT_INT USE_FAST_STDIO
USE_LARGE_FILES USE_PERLIO
Built under linux
Compiled at Aug 1 2011 06:32:31
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="4191"
PERL5_CPAN_IS_EXECUTING="/home/trushel/cpan/build/5.8.9-m/Bio-SCF-1.03-92QKSE/Makefile.PL"
PERL5_CPAN_IS_RUNNING="4191"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="2687,4191"
PERL_AUTOINSTALL="--defaultdeps"
PERL_CR_SMOKER_CURRENT="Bio-SCF-1.03"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/trushel/perl/perl589m/lib/5.8.9/x86_64-linux-multi
/home/trushel/perl/perl589m/lib/5.8.9
/home/trushel/perl/perl589m/lib/site_perl/5.8.9/x86_64-linux-multi
/home/trushel/perl/perl589m/lib/site_perl/5.8.9
.