Bio-FastParsers v0.221230 Perl 5 v5.36.0 amd64-freebsd
- Status
- Pass
- From
- Nedzad Hrnjica (NHRNJICA)
- Dist
-
Bio-FastParsers v0.221230
- Platform
- Perl 5 v5.36.0 amd64-freebsd
- Date
- 2022-07-30 15:33:26
- ID
- f4566570-101c-11ed-baf8-cfc6bfb3760d
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear DBAURAIN,
This is a computer-generated report for Bio-FastParsers-0.221230
on perl 5.36.0, created by App::cpanminus::reporter 0.17 (1.7046).
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '':
Building and testing Bio-FastParsers-0.221230
cp lib/Bio/FastParsers/Blast/Xml/BlastOutput.pm blib/lib/Bio/FastParsers/Blast/Xml/BlastOutput.pm
cp lib/Bio/FastParsers/Blast/Xml/Hsp.pm blib/lib/Bio/FastParsers/Blast/Xml/Hsp.pm
cp lib/Bio/FastParsers/Hmmer/Table.pm blib/lib/Bio/FastParsers/Hmmer/Table.pm
cp lib/Bio/FastParsers/Constants.pm blib/lib/Bio/FastParsers/Constants.pm
cp lib/Bio/FastParsers/Base.pm blib/lib/Bio/FastParsers/Base.pm
cp lib/Bio/FastParsers/Blast/Xml/Statistics.pm blib/lib/Bio/FastParsers/Blast/Xml/Statistics.pm
cp lib/Bio/FastParsers/Roles/Clusterable.pm blib/lib/Bio/FastParsers/Roles/Clusterable.pm
cp lib/Bio/FastParsers/Types.pm blib/lib/Bio/FastParsers/Types.pm
cp lib/Bio/FastParsers/Uclust.pm blib/lib/Bio/FastParsers/Uclust.pm
cp lib/Bio/FastParsers/Blast/Xml/Iteration.pm blib/lib/Bio/FastParsers/Blast/Xml/Iteration.pm
cp lib/Bio/FastParsers/Blast/Table.pm blib/lib/Bio/FastParsers/Blast/Table.pm
cp lib/Bio/FastParsers/Roles/Domainable.pm blib/lib/Bio/FastParsers/Roles/Domainable.pm
cp lib/Bio/FastParsers/CdHit.pm blib/lib/Bio/FastParsers/CdHit.pm
cp lib/Bio/FastParsers/Hmmer/DomTable.pm blib/lib/Bio/FastParsers/Hmmer/DomTable.pm
cp lib/Bio/FastParsers/Hmmer/Table/Hit.pm blib/lib/Bio/FastParsers/Hmmer/Table/Hit.pm
cp lib/Bio/FastParsers/Blast/Table/Hsp.pm blib/lib/Bio/FastParsers/Blast/Table/Hsp.pm
cp lib/Bio/FastParsers/Hmmer/Standard/Domain.pm blib/lib/Bio/FastParsers/Hmmer/Standard/Domain.pm
cp lib/Bio/FastParsers/Blast/Xml/Parameters.pm blib/lib/Bio/FastParsers/Blast/Xml/Parameters.pm
cp lib/Bio/FastParsers/Hmmer/Standard/Target.pm blib/lib/Bio/FastParsers/Hmmer/Standard/Target.pm
cp lib/Bio/FastParsers/Hmmer/Standard.pm blib/lib/Bio/FastParsers/Hmmer/Standard.pm
cp lib/Bio/FastParsers/Blast.pm blib/lib/Bio/FastParsers/Blast.pm
cp lib/Bio/FastParsers.pm blib/lib/Bio/FastParsers.pm
cp lib/Bio/FastParsers/Hmmer/Standard/Iteration.pm blib/lib/Bio/FastParsers/Hmmer/Standard/Iteration.pm
cp lib/Bio/FastParsers/Hmmer/Model.pm blib/lib/Bio/FastParsers/Hmmer/Model.pm
cp lib/Bio/FastParsers/Blast/Xml.pm blib/lib/Bio/FastParsers/Blast/Xml.pm
cp lib/Bio/FastParsers/Hmmer.pm blib/lib/Bio/FastParsers/Hmmer.pm
cp lib/Bio/FastParsers/Blast/Xml/Hit.pm blib/lib/Bio/FastParsers/Blast/Xml/Hit.pm
cp lib/Bio/FastParsers/Hmmer/DomTable/Hit.pm blib/lib/Bio/FastParsers/Hmmer/DomTable/Hit.pm
cp lib/Bio/FastParsers/Roles/Targetable.pm blib/lib/Bio/FastParsers/Roles/Targetable.pm
PERL_DL_NONLAZY=1 "/usr/home/cpantest/.plenv/versions/5.36.0/bin/perl5.36.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
t/blast_table.t ......... ok
Warning: 'test/empty.xml' unexpectedly empty; returning no BlastOutput! at reader Bio::FastParsers::Blast::Xml::blast_output (defined at /usr/home/cpantest/.cpanm/work/1659195118.34990/Bio-FastParsers-0.221230/blib/lib/Bio/FastParsers/Blast/Xml.pm line 21) line 8.
t/blast_xml.t ........... ok
t/clusterable.t ......... ok
t/hmmer_dom_table.t ..... ok
t/hmmer_model.t ......... ok
t/hmmer_std.t ........... ok
t/hmmer_table.t ......... ok
All tests successful.
Files=10, Tests=844, 36 wallclock secs ( 0.38 usr 0.11 sys + 20.54 cusr 1.49 csys = 22.52 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
No requirements found
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
PATH = /home/cpantest/.plenv/versions/5.36.0/bin:/home/cpantest/.plenv/libexec:/home/cpantest/.plenv/plugins/perl-build/bin:/usr/home/cpantest/5.36.0/local/bin:/home/cpantest/.plenv/shims:/home/cpantest/.plenv/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/home/cpantest/bin
PERL5LIB = /usr/home/cpantest/5.36.0/local/lib/perl5
SHELL = /usr/local/bin/bash
TERM = xterm-256color
Perl special variables (and OS-specific diagnostics, for MSWin32):
EGID = 1002 1002
EUID = 1002
EXECUTABLE_NAME = /usr/home/cpantest/.plenv/versions/5.36.0/bin/perl5.36.0
GID = 1002 1002
UID = 1002
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.34
CPAN::Meta 2.150010
Cwd 3.84
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.64
ExtUtils::Install 2.20
ExtUtils::MakeMaker 7.64
ExtUtils::Manifest 1.73
ExtUtils::ParseXS 3.45
File::Spec 3.84
JSON 4.07
JSON::PP 4.10
Module::Build 0.4231
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.44
Test::More 1.302191
YAML 1.30
YAML::Syck 1.34
version 0.9929
--
Summary of my perl5 (revision 5 version 36 subversion 0) configuration:
Platform:
osname=freebsd
osvers=12.3-release
archname=amd64-freebsd
uname='freebsd home3.nedzadhrnjica.com 12.3-release freebsd 12.3-release r371126 generic amd64 '
config_args='-Dprefix=/home/cpantest/.plenv/versions/5.36.0 -de -Dversiononly -A'eval:scriptdir=/home/cpantest/.plenv/versions/5.36.0/bin''
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
Compiler:
cc='cc'
ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
optimize='-O2'
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='FreeBSD Clang 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags ='-Wl,-E -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/lib/clang/10.0.1/lib
libs=-lpthread -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -ldl -lm -lcrypt -lutil -lc
libc=
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags=' '
cccdlflags='-DPIC -fPIC'
lddlflags='-shared -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under freebsd
Compiled at Jul 27 2022 19:49:14
%ENV:
PERL5LIB="/usr/home/cpantest/5.36.0/local/lib/perl5"
@INC:
/usr/home/cpantest/5.36.0/local/lib/perl5
/home/cpantest/.plenv/versions/5.36.0/lib/perl5/site_perl/5.36.0/amd64-freebsd
/home/cpantest/.plenv/versions/5.36.0/lib/perl5/site_perl/5.36.0
/home/cpantest/.plenv/versions/5.36.0/lib/perl5/5.36.0/amd64-freebsd
/home/cpantest/.plenv/versions/5.36.0/lib/perl5/5.36.0