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From: metabase:user:a0e144f2-373b-11e6-8edd-c6848980b093
Subject: UNKNOWN Alien-SamTools-0.002 v5.25.1 GNU/Linux
Date: 2016-06-24T17:27:38Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear George Hartzell,
This is a computer-generated report for Alien-SamTools-0.002
on perl 5.25.1, created by CPAN-Reporter-1.2017.
Thank you for uploading your work to CPAN. However, attempting to
test your distribution gave an inconclusive result.
This could be because your distribution had an error during the make/build
stage, did not define tests, tests could not be found, because your tests were
interrupted before they finished, or because the results of the tests could not
be parsed. You may wish to consult the CPAN Testers Wiki:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build':
Building Alien-SamTools
+ pkg-config --modversion samtools
Downloading File: 0.1.19.tar.gz ... Done
Extracting Archive ... Done
Building library ...
+ cd /home/dcollins/toolchain/.afl2/.cpan/build/Alien-SamTools-0.002-_pv6yd/_alien/samtools-0.1.19
+ make lib CC=ccache gcc-6 CFLAGS="-fPIC -g -Wall -O2"
ccache -c -fPIC -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -DBGZF_CACHE -I. bgzf.c -o bgzf.o
ccache: invalid option -- 'f'
Usage:
ccache [options]
ccache compiler [compiler options]
compiler [compiler options] (via symbolic link)
Options:
-c, --cleanup delete old files and recalculate size counters
(normally not needed as this is done automatically)
-C, --clear clear the cache completely (except configuration)
-F, --max-files=N set maximum number of files in cache to N (use 0 for
no limit)
-M, --max-size=SIZE set maximum size of cache to SIZE (use 0 for no
limit); available suffixes: k, M, G, T (decimal) and
Ki, Mi, Gi, Ti (binary); default suffix: G
-o, --set-config=K=V set configuration key K to value V
-p, --print-config print current configuration options
-s, --show-stats show statistics summary
-z, --zero-stats zero statistics counters
-h, --help print this help text
-V, --version print version and copyright information
See also <http://ccache.samba.org>.
Cleaned cache
make: *** [bgzf.o] Error 1
Makefile:56: recipe for target 'bgzf.o' failed
External command (make lib CC=ccache gcc-6 CFLAGS="-fPIC -g -Wall -O2") failed! Error: 512
at ./Build line 61.
Failed
Build not completed at ./Build line 61.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------ ------ --------
Alien::Base 0 0.029
File::ShareDir 1.00 1.102
perl v5.8.1 5.025001
configure_requires:
Module Need Have
------------------------ ------ --------
Alien::Base::ModuleBuild 0 0.029
Module::Build 0 0.4218
perl 5.006 5.025001
strict 0 1.11
warnings 0 1.36
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL = /usr/bin/perl5.25.1
PERL5LIB = /home/dcollins/toolchain/.afl2/.cpan/build/bignum-0.42-cugNrg/blib/arch:/home/dcollins/toolchain/.afl2/.cpan/build/bignum-0.42-cugNrg/blib/lib:/home/dcollins/toolchain/.afl2/.cpan/build/Lingua-Jspell-1.91-2UTKMu/blib/arch:/home/dcollins/toolchain/.afl2/.cpan/build/Lingua-Jspell-1.91-2UTKMu/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 54870
PERL5_CPAN_IS_RUNNING = 54870
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/bin/perl5.25.1
$UID/$EUID = 1002 / 1002
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.11
CPAN::Meta 2.150005
Cwd 3.62
ExtUtils::CBuilder 0.280225
ExtUtils::Command 7.18
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.18
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.31
File::Spec 3.62
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4218
Module::Signature 0.80
Parse::CPAN::Meta 1.4419
Test::Harness 3.36
Test::More 1.302030
YAML 1.15
YAML::Syck 1.29
version 0.9917
--
Summary of my perl5 (revision 5 version 25 subversion 1) configuration:
Commit id: 5b145eb412326b9b57276229cfde0ef09e7ca2bc
Platform:
osname=linux, osvers=4.6.0-1-amd64, archname=x86_64-linux-ld
uname='linux nightshade64 4.6.0-1-amd64 #1 smp debian 4.6.1-1 (2016-06-06) x86_64 gnulinux '
config_args='-Dusedevel -Dprefix=/usr -Dcc=ccache gcc-6 -Duselongdouble -Duse64bitall -Doptimize=-O3 -Dversiononly -Uman1dir -Uman3dir -Dsiteprefix=/home/dcollins/toolchain/local -des'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='ccache gcc-6', ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O3',
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='6.1.1 20160519', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='ccache gcc-6', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.22.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.22'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O3 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_OP_PARENT PERL_PRESERVE_IVUV PERL_USE_DEVEL
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_LONG_DOUBLE
USE_PERLIO USE_PERL_ATOF
Built under linux
Compiled at Jan 1 1970 00:00:00
%ENV:
PERL="/usr/bin/perl5.25.1"
PERL5LIB="/home/dcollins/toolchain/.afl2/.cpan/build/bignum-0.42-cugNrg/blib/arch:/home/dcollins/toolchain/.afl2/.cpan/build/bignum-0.42-cugNrg/blib/lib:/home/dcollins/toolchain/.afl2/.cpan/build/Lingua-Jspell-1.91-2UTKMu/blib/arch:/home/dcollins/toolchain/.afl2/.cpan/build/Lingua-Jspell-1.91-2UTKMu/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="54870"
PERL5_CPAN_IS_RUNNING="54870"
@INC:
/home/dcollins/toolchain/.afl2/.cpan/build/bignum-0.42-cugNrg/blib/arch
/home/dcollins/toolchain/.afl2/.cpan/build/bignum-0.42-cugNrg/blib/lib
/home/dcollins/toolchain/.afl2/.cpan/build/Lingua-Jspell-1.91-2UTKMu/blib/arch
/home/dcollins/toolchain/.afl2/.cpan/build/Lingua-Jspell-1.91-2UTKMu/blib/lib
/home/dcollins/toolchain/local/lib/perl5/site_perl/5.25.1/x86_64-linux-ld
/home/dcollins/toolchain/local/lib/perl5/site_perl/5.25.1
/usr/lib/perl5/5.25.1/x86_64-linux-ld
/usr/lib/perl5/5.25.1
.