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From: metabase:user:322078bc-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-VertRes-Config-1.133090 v5.18.1 MidnightBSD
Date: 2013-11-12T19:16:27Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear AJPAGE,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9142. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'make test':
PERL_DL_NONLAZY=1 /usr/home/cpan/pit/bare/perl-5.18.1/bin/perl5.18.1 "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/Bio/VertRes/Config/*.t t/Bio/VertRes/Config/CommandLine/*.t t/Bio/VertRes/Config/Pipelines/*.t t/Bio/VertRes/Config/Recipes/*.t t/bin/*.t
t/bin/bacteria_assembly_and_annotation.t ........................... ok
t/bin/bacteria_assembly_single_cell.t .............................. ok
t/bin/bacteria_mapping.t ........................................... ok
t/bin/bacteria_register_and_qc_study.t ............................. ok
t/bin/bacteria_rna_seq_expression.t ................................ ok
t/bin/bacteria_snp_calling.t ....................................... ok
t/bin/eukaryote_assembly.t ......................................... ok
t/bin/eukaryote_mapping.t .......................................... ok
t/bin/eukaryote_register_and_qc_study.t ............................ ok
t/bin/eukaryote_rna_seq_expression.t ............................... ok
t/bin/eukaryote_snp_calling.t ...................................... ok
t/bin/helminth_mapping.t ........................................... ok
t/bin/helminth_register_and_qc_study.t ............................. ok
t/bin/helminth_rna_seq_expression.t ................................ ok
t/bin/helminth_snp_calling.t ....................................... ok
# Failed test 'log file has been created for bacteria_assembly_and_annotation'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_assembly_single_cell'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for bacteria_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_assembly'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for eukaryote_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for helminth_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for setup_global_configs'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_assembly_and_annotation'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_mapping'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_register_and_qc_study'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_rna_seq_expression'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Failed test 'log file has been created for virus_snp_calling'
# at t/bin/log_parameters.t line 23.
readline() on closed filehandle $fh at t/bin/log_parameters.t line 25.
# Failed test 'correct format of log file'
# at t/bin/log_parameters.t line 25.
# Looks like you failed 42 tests of 42.
t/bin/log_parameters.t .............................................
Dubious, test returned 42 (wstat 10752, 0x2a00)
Failed 42/42 subtests
# Failed test 'files created as expected for ./bin/setup_global_configs -d pathogen_euk_track -c /tmp/e4dTE5MUFb -l t/data/refs.index'
# at t/lib/TestHelper.pm line 25.
# Structures begin differing at:
# $got->[0] = Does not exist
# $expected->[0] = 'command_line.log'
# Failed test 'files created as expected for ./bin/setup_global_configs -d some_other_db_name -c /tmp/svWw97Ix7O -l t/data/refs.index'
# at t/lib/TestHelper.pm line 25.
# Structures begin differing at:
# $got->[0] = Does not exist
# $expected->[0] = 'command_line.log'
# Looks like you failed 2 tests of 2.
t/bin/setup_global_configs.t .......................................
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/2 subtests
t/bin/virus_assembly_and_annotation.t .............................. ok
t/bin/virus_mapping.t .............................................. ok
t/bin/virus_register_and_qc_study.t ................................ ok
t/bin/virus_rna_seq_expression.t ................................... ok
t/bin/virus_snp_calling.t .......................................... ok
t/Bio/VertRes/Config/CommandLine/Common.t .......................... ok
t/Bio/VertRes/Config/CommandLine/ConstructLimits.t ................. ok
t/Bio/VertRes/Config/CommandLine/LogParameters.t ................... ok
t/Bio/VertRes/Config/CommandLine/StudyNameSearch.t ................. ok
t/Bio/VertRes/Config/MultipleTopLevelFiles.t ....................... ok
t/Bio/VertRes/Config/Pipelines/AnnotateAssembly.t .................. ok
t/Bio/VertRes/Config/Pipelines/Assembly.t .......................... ok
t/Bio/VertRes/Config/Pipelines/BamImprovement.t .................... ok
t/Bio/VertRes/Config/Pipelines/Bowtie2Mapping.t .................... ok
t/Bio/VertRes/Config/Pipelines/BwaMapping.t ........................ ok
t/Bio/VertRes/Config/Pipelines/Common.t ............................ ok
t/Bio/VertRes/Config/Pipelines/Import.t ............................ ok
t/Bio/VertRes/Config/Pipelines/Mapping.t ........................... ok
t/Bio/VertRes/Config/Pipelines/QC.t ................................ ok
t/Bio/VertRes/Config/Pipelines/RnaSeqExpression.t .................. ok
t/Bio/VertRes/Config/Pipelines/SmaltMapping.t ...................... ok
t/Bio/VertRes/Config/Pipelines/SnpCalling.t ........................ ok
t/Bio/VertRes/Config/Pipelines/SpadesAssembly.t .................... ok
t/Bio/VertRes/Config/Pipelines/Ssaha2Mapping.t ..................... ok
t/Bio/VertRes/Config/Pipelines/StampyMapping.t ..................... ok
t/Bio/VertRes/Config/Pipelines/Store.t ............................. ok
t/Bio/VertRes/Config/Pipelines/Tradis.t ............................ ok
t/Bio/VertRes/Config/Pipelines/VelvetAssembly.t .................... ok
t/Bio/VertRes/Config/Recipes/BacteriaAssemblyAndAnnotation.t ....... ok
t/Bio/VertRes/Config/Recipes/BacteriaAssemblySingleCell.t .......... ok
t/Bio/VertRes/Config/Recipes/BacteriaRegisterAndQCStudy.t .......... ok
t/Bio/VertRes/Config/Recipes/BacteriaRnaSeqExpressionUsingBwa.t .... ok
t/Bio/VertRes/Config/Recipes/BacteriaRnaSeqExpressionUsingSmalt.t .. ok
t/Bio/VertRes/Config/Recipes/BacteriaSnpCallingUsingBwa.t .......... ok
t/Bio/VertRes/Config/Recipes/BacteriaSnpCallingUsingSmalt.t ........ ok
t/Bio/VertRes/Config/Recipes/EukaryotesAssembly.t .................. ok
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingBwa.t ........... ok
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingSmalt.t ......... ok
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingSsaha2.t ........ ok
t/Bio/VertRes/Config/Recipes/EukaryotesMappingUsingStampy.t ........ ok
t/Bio/VertRes/Config/Recipes/EukaryotesRegisterAndQCStudy.t ........ ok
t/Bio/VertRes/Config/Recipes/EukaryotesRnaSeqExpression.t .......... ok
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingBwa.t ........ ok
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingSmalt.t ...... ok
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingSsaha2.t ..... ok
t/Bio/VertRes/Config/Recipes/EukaryotesSnpCallingUsingStampy.t ..... ok
t/Bio/VertRes/Config/Recipes/Global.t .............................. ok
t/Bio/VertRes/Config/Recipes/HelminthRegisterAndQCStudy.t .......... ok
t/Bio/VertRes/Config/Recipes/VirusAssemblyAndAnnotation.t .......... ok
t/Bio/VertRes/Config/Recipes/VirusRegisterAndQCStudy.t ............. ok
t/Bio/VertRes/Config/References.t .................................. ok
t/Bio/VertRes/Config/RegisterStudy.t ............................... ok
t/Bio/VertRes/Config/TopLevel.t .................................... ok
Test Summary Report
-------------------
t/bin/log_parameters.t (Wstat: 10752 Tests: 42 Failed: 42)
Failed tests: 1-42
Non-zero exit status: 42
t/bin/setup_global_configs.t (Wstat: 512 Tests: 2 Failed: 2)
Failed tests: 1-2
Non-zero exit status: 2
Files=70, Tests=802, 136 wallclock secs ( 0.55 usr 0.52 sys + 90.10 cusr 42.05 csys = 133.23 CPU)
Result: FAIL
Failed 2/70 test programs. 44/802 subtests failed.
*** [test_dynamic] Error code 255
Stop in /usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090.
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
DBI 1.630 0
Data::Dumper 2.145 0
Exception::Class 1.37 0
File::Basename 2.84 0
File::Find 1.23 0
File::Path 2.09 0
File::Slurp 9999.19 0
File::Temp 0.2304 0
Getopt::Long 2.39 0
Moose 2.1005 0
Moose::Role 2.1005 0
Moose::Util::TypeConstraints 2.1005 0
Test::Most 0.31 0
strict 1.07 0
warnings 1.18 0
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9142
CPANPLUS::Dist::Build 0.74
Cwd 3.40
ExtUtils::CBuilder 0.280212
ExtUtils::Command 1.17
ExtUtils::Install 1.59
ExtUtils::MakeMaker 6.82
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.22
File::Spec 3.40
Module::Build 0.4200
Pod::Parser 1.60
Pod::Simple 3.28
Test::Harness 3.29
Test::More 1.001002
version 0.9904
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.90.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
NONINTERACTIVE_TESTING = 1
PATH = /usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Moose-2.1005/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-0.36/blib/script:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/DBI-1.630/blib/script:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/home/cpan/bin
PERL5LIB = :/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/DBI-1.630/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/DBI-1.630/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-StackTrace-1.30/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-StackTrace-1.30/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Exception-Class-1.37/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Exception-Class-1.37/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/File-Slurp-9999.19/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/File-Slurp-9999.19/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Tester-0.109/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Tester-0.109/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-NoWarnings-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-NoWarnings-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Deep-0.110/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Deep-0.110/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/CPAN-Meta-Check-0.008/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/CPAN-Meta-Check-0.008/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Params-Util-1.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Params-Util-1.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Install-0.927/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Install-0.927/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Data-OptList-0.108/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Data-OptList-0.108/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Runtime-0.013/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Runtime-0.013/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Try-Tiny-0.18/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Try-Tiny-0.18/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Fatal-0.013/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Fatal-0.013/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Requires-0.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Requires-0.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Implementation-0.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Implementation-0.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/List-MoreUtils-0.33/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/List-MoreUtils-0.33/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Dist-CheckConflicts-0.09/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Dist-CheckConflicts-0.09/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-XS-0.28/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-XS-0.28/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-0.36/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-0.36/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-0.20/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-0.20/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-XS-0.06/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-XS-0.06/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-Progressive-0.001011/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-Progressive-0.001011/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-GlobalDestruction-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-GlobalDestruction-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Eval-Closure-0.11/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Eval-Closure-0.11/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/MRO-Compat-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/MRO-Compat-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-DeprecationManager-0.13/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-DeprecationManager-0.13/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-0.987/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-0.987/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Name-0.05/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Name-0.05/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Task-Weaken-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Task-Weaken-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-CheckDeps-0.010/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-CheckDeps-0.010/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Moose-2.1005/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Moose-2.1005/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Algorithm-Diff-1.1902/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Algorithm-Diff-1.1902/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Text-Diff-1.41/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Text-Diff-1.41/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Differences-0.61/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Differences-0.61/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Uplevel-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Uplevel-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Exception-0.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Exception-0.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Tree-DAG_Node-1.18/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Tree-DAG_Node-1.18/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Warn-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Warn-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Most-0.31/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Most-0.31/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090/blib/arch
PERL5_CPANPLUS_IS_RUNNING = 3900
PERL5_CPANPLUS_IS_VERSION = 0.9142
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /usr/home/cpan/pit/bare/conf/perl-5.18.1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/local/bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /usr/home/cpan/pit/bare/perl-5.18.1/bin/perl5.18.1
UID: $< = 1002
EUID: $> = 1002
GID: $( = 1002 1002
EGID: $) = 1002 1002
-------------------------------
--
Summary of my perl5 (revision 5 version 18 subversion 1) configuration:
Platform:
osname=midnightbsd, osvers=0.4-release, archname=amd64-midnightbsd
uname='midnightbsd mangel 0.4-release midnightbsd 0.4-release #0: fri jul 5 07:52:43 edt 2013 root@m5.midnightbsd.org:usrobjusrsrcsysgeneric amd64 '
config_args='-des -Dprefix=/usr/home/cpan/pit/bare/perl-5.18.1'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include',
optimize='-O',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 20070831 patched [MidnightBSD]', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib
libs=-lgdbm -lm -lcrypt -lutil -lc
perllibs=-lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' '
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_SAWAMPERSAND USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under midnightbsd
Compiled at Aug 17 2013 15:32:28
%ENV:
PERL5LIB=":/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/DBI-1.630/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/DBI-1.630/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Data-Inheritable-0.08/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Data-Inheritable-0.08/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-StackTrace-1.30/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-StackTrace-1.30/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Exception-Class-1.37/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Exception-Class-1.37/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/File-Slurp-9999.19/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/File-Slurp-9999.19/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Tester-0.109/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Tester-0.109/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-NoWarnings-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-NoWarnings-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Deep-0.110/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Deep-0.110/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/CPAN-Meta-Check-0.008/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/CPAN-Meta-Check-0.008/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Params-Util-1.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Params-Util-1.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Install-0.927/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Install-0.927/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Data-OptList-0.108/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Data-OptList-0.108/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Runtime-0.013/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Runtime-0.013/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Try-Tiny-0.18/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Try-Tiny-0.18/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Fatal-0.013/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Fatal-0.013/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Requires-0.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Requires-0.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Implementation-0.07/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Module-Implementation-0.07/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/List-MoreUtils-0.33/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/List-MoreUtils-0.33/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Dist-CheckConflicts-0.09/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Dist-CheckConflicts-0.09/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-XS-0.28/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-XS-0.28/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-0.36/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-Stash-0.36/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-0.20/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-0.20/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-XS-0.06/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Class-Load-XS-0.06/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-Progressive-0.001011/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-Progressive-0.001011/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-GlobalDestruction-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Devel-GlobalDestruction-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Eval-Closure-0.11/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Eval-Closure-0.11/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/MRO-Compat-0.12/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/MRO-Compat-0.12/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-DeprecationManager-0.13/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Package-DeprecationManager-0.13/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-0.987/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Exporter-0.987/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Name-0.05/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Name-0.05/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Task-Weaken-1.04/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Task-Weaken-1.04/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-CheckDeps-0.010/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-CheckDeps-0.010/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Moose-2.1005/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Moose-2.1005/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Algorithm-Diff-1.1902/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Algorithm-Diff-1.1902/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Text-Diff-1.41/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Text-Diff-1.41/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Differences-0.61/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Differences-0.61/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Uplevel-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Sub-Uplevel-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Exception-0.32/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Exception-0.32/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Tree-DAG_Node-1.18/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Tree-DAG_Node-1.18/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Warn-0.24/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Warn-0.24/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Most-0.31/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Most-0.31/blib/arch:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090/blib/lib:/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090/blib/arch"
PERL5_CPANPLUS_IS_RUNNING="3900"
PERL5_CPANPLUS_IS_VERSION="0.9142"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/usr/home/cpan/pit/bare/conf/perl-5.18.1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/DBI-1.630/blib/lib
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/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Exception-Class-1.37/blib/lib
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/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Test-Most-0.31/blib/arch
/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090/blib/lib
/usr/home/cpan/pit/bare/conf/perl-5.18.1/.cpanplus/5.18.1/build/Bio-VertRes-Config-1.133090/blib/arch
/usr/home/cpan/pit/bare/perl-5.18.1/lib/site_perl/5.18.1/amd64-midnightbsd
/usr/home/cpan/pit/bare/perl-5.18.1/lib/site_perl/5.18.1
/usr/home/cpan/pit/bare/perl-5.18.1/lib/5.18.1/amd64-midnightbsd
/usr/home/cpan/pit/bare/perl-5.18.1/lib/5.18.1
.