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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.15 v5.22.1 FreeBSD
Date: 2016-02-01T08:00:30Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.22.1, created by CPAN-Reporter-1.2015.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/usr/perl5.22.1sp/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
t/t170chadoxml.t ......... ok
t/t175chadoxml_oborel.t .. ok
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
t/t260oborel_in_chado.t .. ok
compilation error: file GO/xsl/oboxml_to_owl.xsl line 818 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
compilation error: file GO/xsl/oboxml_to_owl.xsl line 863 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.81110.go-with-local-id-mapping.obo-1.xml > TMP.81110.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.81110.go-with-local-id-mapping.obo-1.xml", "TMP.81110.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x42327e10), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t270oborel_in_owl.t (Wstat: 1280 Tests: 0 Failed: 0)
Non-zero exit status: 5
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=136, 16 wallclock secs ( 0.45 usr 0.09 sys + 13.68 cusr 1.20 csys = 15.42 CPU)
Result: FAIL
Failed 1/24 test programs. 0/136 subtests failed.
*** [test_dynamic] Error code 255
Stop in /usr/local/src/CPAN/build/2016020106/go-perl-0.15-P0kvro.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -------
Data::Dumper 0 2.158
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 7.04_01
configure_requires:
Module Need Have
------------------- ---- -------
ExtUtils::MakeMaker 0 7.04_01
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LC_ALL = de_DE.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/e/eserte/bin/freebsd9.1:/home/e/eserte/bin/sh:/home/e/eserte/bin:/usr/games:/home/e/eserte/devel:/home/e/eserte/src/srezic-misc/scripts
PERL5LIB = /usr/local/src/CPAN/build/2016020106/Data-Stag-0.14-qnmZe_/blib/arch:/usr/local/src/CPAN/build/2016020106/Data-Stag-0.14-qnmZe_/blib/lib:/usr/local/src/CPAN/build/2016020106/XML-Writer-0.625-r9U_wB/blib/arch:/usr/local/src/CPAN/build/2016020106/XML-Writer-0.625-r9U_wB/blib/lib:/usr/local/src/CPAN/build/2016020106/libxml-perl-0.08-lX5o1E/blib/arch:/usr/local/src/CPAN/build/2016020106/libxml-perl-0.08-lX5o1E/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 80573
PERL5_CPAN_IS_RUNNING = 80573
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 80557,80573
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1000/2016020106/cpanreporter_000_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
SHELL = /usr/local/bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1000/2016020106
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /usr/perl5.22.1sp/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 1000 0 5 1023 1024
$EGID = 1000 1000 0 5 1023 1024
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.11
CPAN::Meta 2.150001
Cwd 3.56
ExtUtils::CBuilder 0.280221
ExtUtils::Command 1.20
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.04_01
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.56
JSON 2.90
JSON::PP 2.27300
Module::Build 0.4214
Module::Signature 0.79
Parse::CPAN::Meta 1.4414
Test::Harness 3.35
Test::More 1.001014
YAML 1.15
YAML::Syck 1.29
version 0.9909
--
Summary of my perl5 (revision 5 version 22 subversion 1) configuration:
Platform:
osname=freebsd, osvers=9.2-release, archname=amd64-freebsd
uname='freebsd cvrsnica.herceg.de 9.2-release freebsd 9.2-release #0 r255898: thu sep 26 22:50:31 utc 2013 root@bake.isc.freebsd.org:usrobjusrsrcsysgeneric amd64 '
config_args='-ds -e -Dprefix=/usr/perl5.22.1sp -Duseshrplib -Dcf_email=srezic@cpan.org -Doptimize=-O2 -pipe'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_FORTIFY_SOURCE=2',
optimize='-O2 -pipe',
cppflags='-DHAS_FPSETMASK -DHAS_FLOATINGPOINT_H -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.2.1 20070831 patched [FreeBSD]', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags ='-pthread -Wl,-E -fstack-protector -L/usr/local/lib'
libpth=/usr/lib /usr/local/lib /usr/include/gcc/4.2 /usr/lib
libs=-lpthread -lgdbm -lm -lcrypt -lutil -lc
perllibs=-lpthread -lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=true, libperl=libperl.so
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags=' -Wl,-R/usr/perl5.22.1sp/lib/5.22.1/amd64-freebsd/CORE'
cccdlflags='-DPIC -fPIC', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Built under freebsd
Compiled at Dec 14 2015 22:51:49
%ENV:
PERL5LIB="/usr/local/src/CPAN/build/2016020106/Data-Stag-0.14-qnmZe_/blib/arch:/usr/local/src/CPAN/build/2016020106/Data-Stag-0.14-qnmZe_/blib/lib:/usr/local/src/CPAN/build/2016020106/XML-Writer-0.625-r9U_wB/blib/arch:/usr/local/src/CPAN/build/2016020106/XML-Writer-0.625-r9U_wB/blib/lib:/usr/local/src/CPAN/build/2016020106/libxml-perl-0.08-lX5o1E/blib/arch:/usr/local/src/CPAN/build/2016020106/libxml-perl-0.08-lX5o1E/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="80573"
PERL5_CPAN_IS_RUNNING="80573"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="80557,80573"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1000/2016020106/cpanreporter_000_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
@INC:
/usr/local/src/CPAN/build/2016020106/Data-Stag-0.14-qnmZe_/blib/arch
/usr/local/src/CPAN/build/2016020106/Data-Stag-0.14-qnmZe_/blib/lib
/usr/local/src/CPAN/build/2016020106/XML-Writer-0.625-r9U_wB/blib/arch
/usr/local/src/CPAN/build/2016020106/XML-Writer-0.625-r9U_wB/blib/lib
/usr/local/src/CPAN/build/2016020106/libxml-perl-0.08-lX5o1E/blib/arch
/usr/local/src/CPAN/build/2016020106/libxml-perl-0.08-lX5o1E/blib/lib
/usr/perl5.22.1sp/lib/site_perl/5.22.1/amd64-freebsd
/usr/perl5.22.1sp/lib/site_perl/5.22.1
/usr/perl5.22.1sp/lib/5.22.1/amd64-freebsd
/usr/perl5.22.1sp/lib/5.22.1
.