Bio-FastParsers v0.180470 Perl 5 v5.26.2 armv7l-linux
- Status
- Pass
- From
- Nigel Horne
- Dist
-
Bio-FastParsers v0.180470
- Platform
- Perl 5 v5.26.2 armv7l-linux
- Date
- 2019-06-29 15:52:11
- ID
- db4c7156-9a85-11e9-8fa9-99a29f1e7dde
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Denis BAURAIN,
This is a computer-generated report for Bio-FastParsers-0.180470
on perl 5.26.2, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/mnt/nas/home/pi2/njh/perl5/perlbrew/perls/perl-5.26.2/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
Warning: 'test/empty.xml' unexpectedly empty; returning no BlastOutput! at reader Bio::FastParsers::Blast::Xml::blast_output (defined at /var/tmp/build/Bio-FastParsers-0.180470-1/blib/lib/Bio/FastParsers/Blast/Xml.pm line 20) line 8.
t/clusterable.t ......... ok
t/blast_xml.t ........... ok
t/blast_table.t ......... ok
t/hmmer_dom_table.t ..... ok
t/hmmer_model.t ......... ok
t/hmmer_table.t ......... ok
t/hmmer_std.t ........... ok
All tests successful.
Files=10, Tests=844, 22 wallclock secs ( 1.20 usr 0.11 sys + 53.91 cusr 5.80 csys = 61.02 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------------------------- ----- --------
aliased 0 0.34
autodie 0 2.29
Carp 0 1.50
Const::Fast 0 0.014
Exporter::Easy 0 0.18
feature 0 1.47
List::AllUtils 0 0.15
Moose 0 2.2010
Moose::Role 0 2.2010
Moose::Util::TypeConstraints 0 2.2010
namespace::autoclean 0 0.28
Path::Class 0 0.37
perl 5.010 5.026002
Smart::Comments 0 1.06
Sort::Naturally 0 1.03
strict 0 1.11
Test::Most 0 0.35
Tie::IxHash 0 1.23
Try::Tiny 0 0.30
warnings 0 1.37
XML::Bare 0.53 0.53
build_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 7.34
Test::Most 0 0.35
configure_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 7.34
perl 5.010 5.026002
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j4
LANG = en_GB.UTF-8
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.26.2/bin:/home/njh/src/njh/smoker/bin:/usr/bin:/bin
PERL5LIB = /var/tmp/build/XML-Bare-0.53-0/blib/arch:/var/tmp/build/XML-Bare-0.53-0/blib/lib:/var/tmp/build/Tie-IxHash-1.23-6/blib/arch:/var/tmp/build/Tie-IxHash-1.23-6/blib/lib:/var/tmp/build/Sort-Naturally-1.03-1/blib/arch:/var/tmp/build/Sort-Naturally-1.03-1/blib/lib:/var/tmp/build/Smart-Comments-1.06-0/blib/arch:/var/tmp/build/Smart-Comments-1.06-0/blib/lib:/var/tmp/build/Path-Class-0.37-2/blib/arch:/var/tmp/build/Path-Class-0.37-2/blib/lib:/var/tmp/build/List-AllUtils-0.15-1/blib/arch:/var/tmp/build/List-AllUtils-0.15-1/blib/lib:/var/tmp/build/List-UtilsBy-0.11-1/blib/arch:/var/tmp/build/List-UtilsBy-0.11-1/blib/lib:/var/tmp/build/Exporter-Easy-0.18-1/blib/arch:/var/tmp/build/Exporter-Easy-0.18-1/blib/lib:/var/tmp/build/Const-Fast-0.014-1/blib/arch:/var/tmp/build/Const-Fast-0.014-1/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 25565
PERL5_CPAN_IS_RUNNING = 25565
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 25547,25565
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.26.2/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.26.2/bin
PERLBREW_PERL = perl-5.26.2
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.84
PERLBREW_VERSION = 0.84
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/sh
TEMP = /tmp/user/1000
TMPDIR = /tmp/user/1000/testwrapper.25550
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /mnt/nas/home/pi2/njh/perl5/perlbrew/perls/perl-5.26.2/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 4 20 24 25 27 29 30 44 46 60 100 101 108 995 997 998 999 1000
$EGID = 1000 4 20 24 25 27 29 30 44 46 60 100 101 108 995 997 998 999 1000
Perl module toolchain versions installed:
Module Have
------------------- ----------
CPAN 2.18
CPAN::Meta 2.150010
Cwd 3.67
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.71
ExtUtils::ParseXS 3.35
File::Spec 3.67
JSON 2.97001
JSON::PP 2.27400_02
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.38
Test::More 1.302136
YAML 1.26
YAML::Syck 1.30
version 0.9917
--
Summary of my perl5 (revision 5 version 26 subversion 2) configuration:
Platform:
osname=linux
osvers=4.9.59-v7+
archname=armv7l-linux
uname='linux pi2 4.9.59-v7+ #1047 smp sun oct 29 12:19:23 gmt 2017 armv7l gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.26.2 -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.26.2/bin'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=undef
use64bitall=undef
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='6.3.0 20170516'
gccosandvers=''
intsize=4
longsize=4
ptrsize=4
doublesize=8
byteorder=1234
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=8
longdblkind=0
ivtype='long'
ivsize=4
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/arm-linux-gnueabihf/6/include-fixed /usr/include/arm-linux-gnueabihf /usr/lib /lib/arm-linux-gnueabihf /lib /usr/lib/arm-linux-gnueabihf
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Apr 24 2018 00:44:51
%ENV:
PERL5LIB="/var/tmp/build/XML-Bare-0.53-0/blib/arch:/var/tmp/build/XML-Bare-0.53-0/blib/lib:/var/tmp/build/Tie-IxHash-1.23-6/blib/arch:/var/tmp/build/Tie-IxHash-1.23-6/blib/lib:/var/tmp/build/Sort-Naturally-1.03-1/blib/arch:/var/tmp/build/Sort-Naturally-1.03-1/blib/lib:/var/tmp/build/Smart-Comments-1.06-0/blib/arch:/var/tmp/build/Smart-Comments-1.06-0/blib/lib:/var/tmp/build/Path-Class-0.37-2/blib/arch:/var/tmp/build/Path-Class-0.37-2/blib/lib:/var/tmp/build/List-AllUtils-0.15-1/blib/arch:/var/tmp/build/List-AllUtils-0.15-1/blib/lib:/var/tmp/build/List-UtilsBy-0.11-1/blib/arch:/var/tmp/build/List-UtilsBy-0.11-1/blib/lib:/var/tmp/build/Exporter-Easy-0.18-1/blib/arch:/var/tmp/build/Exporter-Easy-0.18-1/blib/lib:/var/tmp/build/Const-Fast-0.014-1/blib/arch:/var/tmp/build/Const-Fast-0.014-1/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="25565"
PERL5_CPAN_IS_RUNNING="25565"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="25547,25565"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.26.2/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.26.2/bin"
PERLBREW_PERL="perl-5.26.2"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.84"
PERLBREW_VERSION="0.84"
PERL_USE_UNSAFE_INC="1"
@INC:
/var/tmp/build/XML-Bare-0.53-0/blib/arch
/var/tmp/build/XML-Bare-0.53-0/blib/lib
/var/tmp/build/Tie-IxHash-1.23-6/blib/arch
/var/tmp/build/Tie-IxHash-1.23-6/blib/lib
/var/tmp/build/Sort-Naturally-1.03-1/blib/arch
/var/tmp/build/Sort-Naturally-1.03-1/blib/lib
/var/tmp/build/Smart-Comments-1.06-0/blib/arch
/var/tmp/build/Smart-Comments-1.06-0/blib/lib
/var/tmp/build/Path-Class-0.37-2/blib/arch
/var/tmp/build/Path-Class-0.37-2/blib/lib
/var/tmp/build/List-AllUtils-0.15-1/blib/arch
/var/tmp/build/List-AllUtils-0.15-1/blib/lib
/var/tmp/build/List-UtilsBy-0.11-1/blib/arch
/var/tmp/build/List-UtilsBy-0.11-1/blib/lib
/var/tmp/build/Exporter-Easy-0.18-1/blib/arch
/var/tmp/build/Exporter-Easy-0.18-1/blib/lib
/var/tmp/build/Const-Fast-0.014-1/blib/arch
/var/tmp/build/Const-Fast-0.014-1/blib/lib
/home/njh/perl5/perlbrew/perls/perl-5.26.2/lib/site_perl/5.26.2/armv7l-linux
/home/njh/perl5/perlbrew/perls/perl-5.26.2/lib/site_perl/5.26.2
/home/njh/perl5/perlbrew/perls/perl-5.26.2/lib/5.26.2/armv7l-linux
/home/njh/perl5/perlbrew/perls/perl-5.26.2/lib/5.26.2
.