Bio-DB-BioFetch v1.7.3 Perl 5 v5.24.2 x86_64-linux-thread-multi

Status
Pass
From
Slaven Rezić (SREZIC)
Dist
Bio-DB-BioFetch v1.7.3
Platform
Perl 5 v5.24.2 x86_64-linux-thread-multi
Date
2019-03-16 18:53:29
ID
c9b5776e-481c-11e9-b8b3-d75c1f24ea8f
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear Colin Diesh,

This is a computer-generated report for Bio-DB-BioFetch-1.7.3
on perl 5.24.2, created by CPAN-Reporter-1.2018.

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

none provided

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 "/opt/perl-5.24.2t/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ........... ok
t/author-eol.t ........... skipped: these tests are for testing by the author
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/BioFetch.t ............. ok
All tests successful.
Files=6, Tests=37,  5 wallclock secs ( 0.01 usr  0.04 sys +  1.36 cusr  0.23 csys =  1.64 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                 Need  Have    
    ---------------------- ----- --------
    base                   0     2.23_01 
    Bio::DB::WebDBSeqI     0     1.7.5   
    Bio::Root::Root        0     1.7.5   
    Carp                   0     1.40    
    constant               0     1.33    
    HTTP::Request::Common  0     6.13    
    perl                   5.006 5.024002
    strict                 0     1.11    
    vars                   0     1.03    

build_requires:

    Module                 Need  Have    
    ---------------------- ----- --------
    Data::Stag             0     0.14    
    ExtUtils::MakeMaker    0     7.10_02 
    File::Spec             0     3.63_01 
    IO::Handle             0     1.36    
    IPC::Open3             0     1.20    
    Test::Exception        0     0.43    
    Test::More             0     1.302086
    Test::RequiresInternet 0     0.05    
    Test::Warn             0     0.32    
    warnings               0     1.36    

configure_requires:

    Module                 Need  Have    
    ---------------------- ----- --------
    ExtUtils::MakeMaker    0     7.10_02 


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    LANG = C
    LC_ALL = de_DE.UTF-8
    PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
    PERL5LIB = /home/cpansand/.cpan/build/2019031618/Apache-DBI-1.12-hGNx68/blib/arch:/home/cpansand/.cpan/build/2019031618/Apache-DBI-1.12-hGNx68/blib/lib:/home/cpansand/.cpan/build/2019031618/BioPerl-1.7.5-Otn6Ag/blib/arch:/home/cpansand/.cpan/build/2019031618/BioPerl-1.7.5-Otn6Ag/blib/lib:/home/cpansand/.cpan/build/2019031618/Test-Weaken-3.022000-iwbnp3/blib/arch:/home/cpansand/.cpan/build/2019031618/Test-Weaken-3.022000-iwbnp3/blib/lib:/home/cpansand/.cpan/build/2019031618/Graph-0.9704-iaDVam/blib/arch:/home/cpansand/.cpan/build/2019031618/Graph-0.9704-iaDVam/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-SAX-Writer-0.57-Q6xfaK/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-SAX-Writer-0.57-Q6xfaK/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-Filter-BufferText-1.01-meOkwA/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-Filter-BufferText-1.01-meOkwA/blib/lib:/home/cpansand/.cpan/build/2019031618/GD-2.71-q9QcYk/blib/arch:/home/cpansand/.cpan/build/2019031618/GD-2.71-q9QcYk/blib/lib:/home/cpansand/.cpan/build/2019031618/Test-Fork-0.02-eZbBei/blib/arch:/home/cpansand/.cpan/build/2019031618/Test-Fork-0.02-eZbBei/blib/lib:/home/cpansand/.cpan/build/2019031618/Test-Memory-Cycle-1.06-TYHgS8/blib/arch:/home/cpansand/.cpan/build/2019031618/Test-Memory-Cycle-1.06-TYHgS8/blib/lib:/home/cpansand/.cpan/build/2019031618/Devel-Cycle-1.12-WeHOvs/blib/arch:/home/cpansand/.cpan/build/2019031618/Devel-Cycle-1.12-WeHOvs/blib/lib:/home/cpansand/.cpan/build/2019031618/Error-0.17027-SRnVNB/blib/arch:/home/cpansand/.cpan/build/2019031618/Error-0.17027-SRnVNB/blib/lib:/home/cpansand/.cpan/build/2019031618/Data-Stag-0.14-ffGwLx/blib/arch:/home/cpansand/.cpan/build/2019031618/Data-Stag-0.14-ffGwLx/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-DOM-XPath-0.14-Fioq1R/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-DOM-XPath-0.14-Fioq1R/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-DOM-1.46-8MYZBb/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-DOM-1.46-8MYZBb/blib/lib:/home/cpansand/.cpan/build/2019031618/libxml-perl-0.08-kj0DKY/blib/arch:/home/cpansand/.cpan/build/2019031618/libxml-perl-0.08-kj0DKY/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-RegExp-0.04-9ERv0y/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-RegExp-0.04-9ERv0y/blib/lib:/home/cpansand/.cpan/build/2019031618/DBI-1.642-gcv9GI/blib/arch:/home/cpansand/.cpan/build/2019031618/DBI-1.642-gcv9GI/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-Writer-0.625-qJjVxR/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-Writer-0.625-qJjVxR/blib/lib:/home/cpansand/.cpan/build/2019031618/Set-Scalar-1.29-CFgBeH/blib/arch:/home/cpansand/.cpan/build/2019031618/Set-Scalar-1.29-CFgBeH/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 22980
    PERL5_CPAN_IS_RUNNING = 22980
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 19823,22980
    PERLDOC = -MPod::Perldoc::ToTextOverstrike
    PERL_BATCH = yes
    PERL_CANARY_STABILITY_NOPROMPT = 1
    PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1023/2019031618/cpanreporter_000_config.ini
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_USE_UNSAFE_INC = 1
    SHELL = /usr/bin/zsh
    TERM = screen
    TMPDIR = /var/tmp/cpansmoker-1023/2019031618

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /opt/perl-5.24.2t/bin/perl
    $UID/$EUID = 1023 / 1023
    $GID = 1023 1023
    $EGID = 1023 1023

Perl module toolchain versions installed:

    Module              Have      
    ------------------- ----------
    CPAN                2.11_01   
    CPAN::Meta          2.150005  
    Cwd                 3.63_01   
    ExtUtils::CBuilder  0.280225  
    ExtUtils::Command   7.10_02   
    ExtUtils::Install   2.04      
    ExtUtils::MakeMaker 7.10_02   
    ExtUtils::Manifest  1.70      
    ExtUtils::ParseXS   3.31      
    File::Spec          3.63_01   
    JSON                2.94      
    JSON::PP            2.27300_01
    Module::Build       0.4224    
    Module::Signature   n/a       
    Parse::CPAN::Meta   1.4417_001
    Test::Harness       3.36_01   
    Test::More          1.302086  
    YAML                1.23      
    YAML::Syck          1.30      
    version             0.9916    


--

Summary of my perl5 (revision 5 version 24 subversion 2) configuration:
   
  Platform:
    osname=linux, osvers=4.9.0-3-amd64, archname=x86_64-linux-thread-multi
    uname='linux debian9 4.9.0-3-amd64 #1 smp debian 4.9.30-2+deb9u3 (2017-08-06) x86_64 gnulinux '
    config_args='-ds -e -Dprefix=/opt/perl-5.24.2t -Dusethreads -Dcf_email=srezic@cpan.org'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
    optimize='-O2',
    cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion='', gccversion='6.3.0 20170516', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
    libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
    perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
    libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
    gnulibc_version='2.24'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
    cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
                        PERL_COPY_ON_WRITE PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
                        PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
                        PERL_PRESERVE_IVUV USE_64_BIT_ALL USE_64_BIT_INT
                        USE_ITHREADS USE_LARGE_FILES USE_LOCALE
                        USE_LOCALE_COLLATE USE_LOCALE_CTYPE
                        USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
                        USE_PERL_ATOF USE_REENTRANT_API
  Built under linux
  Compiled at Sep 10 2017 07:10:22
  %ENV:
    PERL5LIB="/home/cpansand/.cpan/build/2019031618/Apache-DBI-1.12-hGNx68/blib/arch:/home/cpansand/.cpan/build/2019031618/Apache-DBI-1.12-hGNx68/blib/lib:/home/cpansand/.cpan/build/2019031618/BioPerl-1.7.5-Otn6Ag/blib/arch:/home/cpansand/.cpan/build/2019031618/BioPerl-1.7.5-Otn6Ag/blib/lib:/home/cpansand/.cpan/build/2019031618/Test-Weaken-3.022000-iwbnp3/blib/arch:/home/cpansand/.cpan/build/2019031618/Test-Weaken-3.022000-iwbnp3/blib/lib:/home/cpansand/.cpan/build/2019031618/Graph-0.9704-iaDVam/blib/arch:/home/cpansand/.cpan/build/2019031618/Graph-0.9704-iaDVam/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-SAX-Writer-0.57-Q6xfaK/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-SAX-Writer-0.57-Q6xfaK/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-Filter-BufferText-1.01-meOkwA/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-Filter-BufferText-1.01-meOkwA/blib/lib:/home/cpansand/.cpan/build/2019031618/GD-2.71-q9QcYk/blib/arch:/home/cpansand/.cpan/build/2019031618/GD-2.71-q9QcYk/blib/lib:/home/cpansand/.cpan/build/2019031618/Test-Fork-0.02-eZbBei/blib/arch:/home/cpansand/.cpan/build/2019031618/Test-Fork-0.02-eZbBei/blib/lib:/home/cpansand/.cpan/build/2019031618/Test-Memory-Cycle-1.06-TYHgS8/blib/arch:/home/cpansand/.cpan/build/2019031618/Test-Memory-Cycle-1.06-TYHgS8/blib/lib:/home/cpansand/.cpan/build/2019031618/Devel-Cycle-1.12-WeHOvs/blib/arch:/home/cpansand/.cpan/build/2019031618/Devel-Cycle-1.12-WeHOvs/blib/lib:/home/cpansand/.cpan/build/2019031618/Error-0.17027-SRnVNB/blib/arch:/home/cpansand/.cpan/build/2019031618/Error-0.17027-SRnVNB/blib/lib:/home/cpansand/.cpan/build/2019031618/Data-Stag-0.14-ffGwLx/blib/arch:/home/cpansand/.cpan/build/2019031618/Data-Stag-0.14-ffGwLx/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-DOM-XPath-0.14-Fioq1R/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-DOM-XPath-0.14-Fioq1R/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-DOM-1.46-8MYZBb/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-DOM-1.46-8MYZBb/blib/lib:/home/cpansand/.cpan/build/2019031618/libxml-perl-0.08-kj0DKY/blib/arch:/home/cpansand/.cpan/build/2019031618/libxml-perl-0.08-kj0DKY/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-RegExp-0.04-9ERv0y/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-RegExp-0.04-9ERv0y/blib/lib:/home/cpansand/.cpan/build/2019031618/DBI-1.642-gcv9GI/blib/arch:/home/cpansand/.cpan/build/2019031618/DBI-1.642-gcv9GI/blib/lib:/home/cpansand/.cpan/build/2019031618/XML-Writer-0.625-qJjVxR/blib/arch:/home/cpansand/.cpan/build/2019031618/XML-Writer-0.625-qJjVxR/blib/lib:/home/cpansand/.cpan/build/2019031618/Set-Scalar-1.29-CFgBeH/blib/arch:/home/cpansand/.cpan/build/2019031618/Set-Scalar-1.29-CFgBeH/blib/lib"
    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="22980"
    PERL5_CPAN_IS_RUNNING="22980"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="19823,22980"
    PERLDOC="-MPod::Perldoc::ToTextOverstrike"
    PERL_BATCH="yes"
    PERL_CANARY_STABILITY_NOPROMPT="1"
    PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1023/2019031618/cpanreporter_000_config.ini"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_USE_UNSAFE_INC="1"
  @INC:
    /home/cpansand/.cpan/build/2019031618/Apache-DBI-1.12-hGNx68/blib/arch
    /home/cpansand/.cpan/build/2019031618/Apache-DBI-1.12-hGNx68/blib/lib
    /home/cpansand/.cpan/build/2019031618/BioPerl-1.7.5-Otn6Ag/blib/arch
    /home/cpansand/.cpan/build/2019031618/BioPerl-1.7.5-Otn6Ag/blib/lib
    /home/cpansand/.cpan/build/2019031618/Test-Weaken-3.022000-iwbnp3/blib/arch
    /home/cpansand/.cpan/build/2019031618/Test-Weaken-3.022000-iwbnp3/blib/lib
    /home/cpansand/.cpan/build/2019031618/Graph-0.9704-iaDVam/blib/arch
    /home/cpansand/.cpan/build/2019031618/Graph-0.9704-iaDVam/blib/lib
    /home/cpansand/.cpan/build/2019031618/XML-SAX-Writer-0.57-Q6xfaK/blib/arch
    /home/cpansand/.cpan/build/2019031618/XML-SAX-Writer-0.57-Q6xfaK/blib/lib
    /home/cpansand/.cpan/build/2019031618/XML-Filter-BufferText-1.01-meOkwA/blib/arch
    /home/cpansand/.cpan/build/2019031618/XML-Filter-BufferText-1.01-meOkwA/blib/lib
    /home/cpansand/.cpan/build/2019031618/GD-2.71-q9QcYk/blib/arch
    /home/cpansand/.cpan/build/2019031618/GD-2.71-q9QcYk/blib/lib
    /home/cpansand/.cpan/build/2019031618/Test-Fork-0.02-eZbBei/blib/arch
    /home/cpansand/.cpan/build/2019031618/Test-Fork-0.02-eZbBei/blib/lib
    /home/cpansand/.cpan/build/2019031618/Test-Memory-Cycle-1.06-TYHgS8/blib/arch
    /home/cpansand/.cpan/build/2019031618/Test-Memory-Cycle-1.06-TYHgS8/blib/lib
    /home/cpansand/.cpan/build/2019031618/Devel-Cycle-1.12-WeHOvs/blib/arch
    /home/cpansand/.cpan/build/2019031618/Devel-Cycle-1.12-WeHOvs/blib/lib
    /home/cpansand/.cpan/build/2019031618/Error-0.17027-SRnVNB/blib/arch
    /home/cpansand/.cpan/build/2019031618/Error-0.17027-SRnVNB/blib/lib
    /home/cpansand/.cpan/build/2019031618/Data-Stag-0.14-ffGwLx/blib/arch
    /home/cpansand/.cpan/build/2019031618/Data-Stag-0.14-ffGwLx/blib/lib
    /home/cpansand/.cpan/build/2019031618/XML-DOM-XPath-0.14-Fioq1R/blib/arch
    /home/cpansand/.cpan/build/2019031618/XML-DOM-XPath-0.14-Fioq1R/blib/lib
    /home/cpansand/.cpan/build/2019031618/XML-DOM-1.46-8MYZBb/blib/arch
    /home/cpansand/.cpan/build/2019031618/XML-DOM-1.46-8MYZBb/blib/lib
    /home/cpansand/.cpan/build/2019031618/libxml-perl-0.08-kj0DKY/blib/arch
    /home/cpansand/.cpan/build/2019031618/libxml-perl-0.08-kj0DKY/blib/lib
    /home/cpansand/.cpan/build/2019031618/XML-RegExp-0.04-9ERv0y/blib/arch
    /home/cpansand/.cpan/build/2019031618/XML-RegExp-0.04-9ERv0y/blib/lib
    /home/cpansand/.cpan/build/2019031618/DBI-1.642-gcv9GI/blib/arch
    /home/cpansand/.cpan/build/2019031618/DBI-1.642-gcv9GI/blib/lib
    /home/cpansand/.cpan/build/2019031618/XML-Writer-0.625-qJjVxR/blib/arch
    /home/cpansand/.cpan/build/2019031618/XML-Writer-0.625-qJjVxR/blib/lib
    /home/cpansand/.cpan/build/2019031618/Set-Scalar-1.29-CFgBeH/blib/arch
    /home/cpansand/.cpan/build/2019031618/Set-Scalar-1.29-CFgBeH/blib/lib
    /opt/perl-5.24.2t/lib/site_perl/5.24.2/x86_64-linux-thread-multi
    /opt/perl-5.24.2t/lib/site_perl/5.24.2
    /opt/perl-5.24.2t/lib/5.24.2/x86_64-linux-thread-multi
    /opt/perl-5.24.2t/lib/5.24.2
    .