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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL BioX-CLPM-0.01 v5.20.0 RC1 GNU/Linux
Date: 2014-05-25T07:11:25Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Nathan Mark Crabtree,
This is a computer-generated report for BioX-CLPM-0.01
on perl 5.20.0, created by CPAN-Reporter-1.2011.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Failed test 'use BioX::CLPM;'
# at t/00.load.t line 4.
# Tried to use 'BioX::CLPM'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/arch /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0 /opt/perl-5.20.0-RC1t/lib/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/5.20.0 .) at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Base.pm line 2.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Base.pm line 2.
# Compilation failed in require at (eval 6) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM.pm line 2.
# Compilation failed in require at t/00.load.t line 4.
# BEGIN failed--compilation aborted at t/00.load.t line 4.
# Failed test 'use BioX::CLPM::Engine;'
# at t/00.load.t line 5.
# Tried to use 'BioX::CLPM::Engine'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 8) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Engine.pm line 2.
# Compilation failed in require at t/00.load.t line 5.
# BEGIN failed--compilation aborted at t/00.load.t line 5.
# Failed test 'use BioX::CLPM::Peaks;'
# at t/00.load.t line 6.
# Tried to use 'BioX::CLPM::Peaks'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/arch /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0 /opt/perl-5.20.0-RC1t/lib/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/5.20.0 .) at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Peaks.pm line 3.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Peaks.pm line 3.
# Compilation failed in require at t/00.load.t line 6.
# BEGIN failed--compilation aborted at t/00.load.t line 6.
# Failed test 'use BioX::CLPM::Linker;'
# at t/00.load.t line 7.
# Tried to use 'BioX::CLPM::Linker'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 11) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Linker.pm line 2.
# Compilation failed in require at t/00.load.t line 7.
# BEGIN failed--compilation aborted at t/00.load.t line 7.
# Failed test 'use BioX::CLPM::Enzyme;'
# at t/00.load.t line 8.
# Tried to use 'BioX::CLPM::Enzyme'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 13) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Enzyme.pm line 2.
# Compilation failed in require at t/00.load.t line 8.
# BEGIN failed--compilation aborted at t/00.load.t line 8.
# Failed test 'use BioX::CLPM::Amino;'
# at t/00.load.t line 9.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 15) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at t/00.load.t line 9.
# BEGIN failed--compilation aborted at t/00.load.t line 9.
# Failed test 'use BioX::CLPM::Sequence;'
# at t/00.load.t line 10.
# Tried to use 'BioX::CLPM::Sequence'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 17) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Sequence.pm line 2.
# Compilation failed in require at t/00.load.t line 10.
# BEGIN failed--compilation aborted at t/00.load.t line 10.
# Failed test 'use BioX::CLPM::Fragments;'
# at t/00.load.t line 11.
# Tried to use 'BioX::CLPM::Fragments'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 19) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Fragments.pm line 2.
# Compilation failed in require at t/00.load.t line 11.
# BEGIN failed--compilation aborted at t/00.load.t line 11.
# Failed test 'use BioX::CLPM::Fragments::Simple;'
# at t/00.load.t line 12.
# Tried to use 'BioX::CLPM::Fragments::Simple'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/arch /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0 /opt/perl-5.20.0-RC1t/lib/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/5.20.0 .) at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Fragments/Simple.pm line 3.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Fragments/Simple.pm line 3.
# Compilation failed in require at t/00.load.t line 12.
# BEGIN failed--compilation aborted at t/00.load.t line 12.
# Failed test 'use BioX::CLPM::Fragments::Linked;'
# at t/00.load.t line 13.
# Tried to use 'BioX::CLPM::Fragments::Linked'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/arch /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0 /opt/perl-5.20.0-RC1t/lib/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/5.20.0 .) at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Fragments/Linked.pm line 3.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Fragments/Linked.pm line 3.
# Compilation failed in require at t/00.load.t line 13.
# BEGIN failed--compilation aborted at t/00.load.t line 13.
# Failed test 'use BioX::CLPM::Matches;'
# at t/00.load.t line 14.
# Tried to use 'BioX::CLPM::Matches'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/arch /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0 /opt/perl-5.20.0-RC1t/lib/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/5.20.0 .) at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Matches.pm line 3.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Matches.pm line 3.
# Compilation failed in require at t/00.load.t line 14.
# BEGIN failed--compilation aborted at t/00.load.t line 14.
# Failed test 'use BioX::CLPM::Base;'
# at t/00.load.t line 15.
# Tried to use 'BioX::CLPM::Base'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at t/00.load.t line 15.
# BEGIN failed--compilation aborted at t/00.load.t line 15.
# Testing BioX::CLPM
# Looks like you failed 12 tests of 12.
t/00.load.t ...
Dubious, test returned 12 (wstat 3072, 0xc00)
Failed 12/12 subtests
# Failed test 'use BioX::CLPM::Amino;'
# at t/01.amino.t line 4.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/arch /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0 /opt/perl-5.20.0-RC1t/lib/5.20.0/x86_64-linux-thread-multi /opt/perl-5.20.0-RC1t/lib/5.20.0 .) at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Base.pm line 2.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Base.pm line 2.
# Compilation failed in require at (eval 6) line 2.
# ...propagated at /opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/base.pm line 84.
# BEGIN failed--compilation aborted at /tmpfs/.cpan-build/BioX-CLPM-2hxJ8O/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at t/01.amino.t line 4.
# BEGIN failed--compilation aborted at t/01.amino.t line 4.
Can't locate object method "new" via package "BioX::CLPM::Amino" at t/01.amino.t line 7.
# Looks like you planned 2 tests but ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test exited with 255 just after 1.
t/01.amino.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 2/2 subtests
Test Summary Report
-------------------
t/00.load.t (Wstat: 3072 Tests: 12 Failed: 12)
Failed tests: 1-12
Non-zero exit status: 12
t/01.amino.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 2 tests but ran 1.
Files=2, Tests=13, 0 wallclock secs ( 0.02 usr 0.02 sys + 0.01 cusr 0.03 csys = 0.08 CPU)
Result: FAIL
Failed 2/2 test programs. 13/13 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- --------
Test::More 0 1.001003
version 0 0.9908
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
DBIC_NO_WARN_BAD_PERL = 1
LANG = C
LC_ALL = de_DE.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/eserte/bin/linux-gnu:/home/eserte/bin/sh:/home/eserte/bin:/usr/games:/home/eserte/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 30373
PERL5_CPAN_IS_RUNNING = 30373
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 7534,30373
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1001/YIkHOoLIS2_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_HTML_DISPLAY_CLASS = HTML::Display::Mozilla
PERL_PARALLEL_SMOKER = yes
SHELL = /bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1001
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.20.0-RC1t/bin/perl
$UID/$EUID = 1001 / 1001
$GID = 1001 109 1001
$EGID = 1001 109 1001
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.05
CPAN::Meta 2.140640
Cwd 3.47
ExtUtils::CBuilder 0.280216
ExtUtils::Command 1.18
ExtUtils::Install 1.67
ExtUtils::MakeMaker 6.98
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.24
File::Spec 3.47
JSON 2.90
JSON::PP 2.27203
Module::Build 0.4205
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.30
Test::More 1.001003
YAML 0.90
YAML::Syck 1.27
version 0.9908
--
Summary of my perl5 (revision 5 version 20 subversion 0) configuration:
Platform:
osname=linux, osvers=3.2.0-4-amd64, archname=x86_64-linux-thread-multi
uname='linux eserte 3.2.0-4-amd64 #1 smp debian 3.2.57-3 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.20.0-RC1t -Dusethreads'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -fwrapv -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.7.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/4.7/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=libc-2.13.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
USE_64_BIT_ALL USE_64_BIT_INT USE_ITHREADS
USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_PERLIO
USE_PERL_ATOF USE_REENTRANT_API
Locally applied patches:
RC1
Built under linux
Compiled at May 23 2014 09:12:16
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="30373"
PERL5_CPAN_IS_RUNNING="30373"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="7534,30373"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1001/YIkHOoLIS2_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_HTML_DISPLAY_CLASS="HTML::Display::Mozilla"
PERL_PARALLEL_SMOKER="yes"
@INC:
/opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0/x86_64-linux-thread-multi
/opt/perl-5.20.0-RC1t/lib/site_perl/5.20.0
/opt/perl-5.20.0-RC1t/lib/5.20.0/x86_64-linux-thread-multi
/opt/perl-5.20.0-RC1t/lib/5.20.0
.