Bio-DB-HTS v3.01 Perl 5 v5.18.4 armv7l-linux-thread-multi
- Status
- Unknown
- From
- Nigel Horne
- Dist
-
Bio-DB-HTS v3.01
- Platform
- Perl 5 v5.18.4 armv7l-linux-thread-multi
- Date
- 2019-04-23 15:23:44
- ID
- c834ded4-65db-11e9-bf31-80c71e9d5857
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Alessandro Vullo,
This is a computer-generated report for Bio-DB-HTS-3.01
on perl 5.18.4, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, attempting to
test your distribution gave an inconclusive result.
This could be because your distribution had an error during the make/build
stage, did not define tests, tests could not be found, because your tests were
interrupted before they finished, or because the results of the tests could not
be parsed. You may wish to consult the CPAN Testers Wiki:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/mnt/nas/home/pi2/njh/perl5/perlbrew/perls/perl-5.18.4/bin/perl5.18.4 Build.PL --installdirs site':
compilet-uMHuk.c:1:5: warning: function declaration isnâÂÂt a prototype [-Wstrict-prototypes]
int boot_compilet() { return 1; }
^~~~~~~~~~~~~
Checking prerequisites...
requires:
! Bio::SeqFeature::Lite is not installed
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
This module requires HTSlib (http://htslib.org/)
Install it if you have not done so already.
This script will attempt to locate HTSlib by looking for htslib/hts.h
and libhts.a / libhts.so in:
1. --htslib command line argument
2. HTSLIB_DIR environment variable
3. --prefix command line argument (which also sets installation location)
4. Alien::HTSlib dependency resolver
5. pkg-config (extra directories can be set in PKG_CONFIG_PATH environment variable)
6. common library locations: /usr /usr/local, /usr/share, /opt/local
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
configure_requires:
Module Need Have
------------- ---- ------
Module::Build 0.38 0.4216
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j4
LANG = en_GB.UTF-8
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.18.4/bin:/home/njh/src/njh/smoker/bin:/usr/bin:/bin
PERL = /mnt/nas/home/pi2/njh/perl5/perlbrew/perls/perl-5.18.4/bin/perl5.18.4
PERL5LIB =
PERL5OPT = -I/tmp/user/1000/testwrapper.7480/CPAN-Reporter-lib-g_aA -MDevel::Autoflush
PERL5_CPANPLUS_IS_RUNNING = 7494
PERL5_CPAN_IS_EXECUTING =
PERL5_CPAN_IS_RUNNING = 7494
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.18.4/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.18.4/bin
PERLBREW_PERL = perl-5.18.4
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.84
PERLBREW_VERSION = 0.84
PERL_AUTOINSTALL = --defaultdeps
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
SHELL = /bin/sh
TEMP = /tmp/user/1000
TMPDIR = /tmp/user/1000/testwrapper.7480
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /mnt/nas/home/pi2/njh/perl5/perlbrew/perls/perl-5.18.4/bin/perl5.18.4
$UID/$EUID = 1000 / 1000
$GID = 1000 4 20 24 25 27 29 30 44 46 60 100 101 108 995 997 998 999 1000
$EGID = 1000 4 20 24 25 27 29 30 44 46 60 100 101 108 995 997 998 999 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.16
CPAN::Meta 2.150005
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.30
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.97001
JSON::PP 2.27300
Module::Build 0.4216
Module::Signature n/a
Parse::CPAN::Meta 1.4422
Test::Harness 3.36
Test::More 1.302136
YAML 1.26
YAML::Syck 1.30
version 0.9916
--
Summary of my perl5 (revision 5 version 18 subversion 4) configuration:
Platform:
osname=linux, osvers=4.1.12-v7+, archname=armv7l-linux-thread-multi
uname='linux pi2.bandsman.co.uk 4.1.12-v7+ #825 smp preempt fri nov 6 18:36:38 gmt 2015 armv7l gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.18.4 -Duseithreads -Dusemultiplicity -Dusedevel -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -mtune=native -march=native -mfpu=vfp -mfloat-abi=hard -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.18.4/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -mtune=native -march=native -mfpu=vfp -mfloat-abi=hard -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -mtune=native -march=native -mfpu=vfp -mfloat-abi=hard -fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=8
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/arm-linux-gnueabihf /lib /usr/lib/arm-linux-gnueabihf /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lpthread -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES MULTIPLICITY PERLIO_LAYERS
PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_SAWAMPERSAND PERL_USE_DEVEL
USE_ITHREADS USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
USE_REENTRANT_API
Built under linux
Compiled at Nov 17 2015 15:58:53
%ENV:
PERL="/mnt/nas/home/pi2/njh/perl5/perlbrew/perls/perl-5.18.4/bin/perl5.18.4"
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="7494"
PERL5_CPAN_IS_EXECUTING=""
PERL5_CPAN_IS_RUNNING="7494"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.18.4/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.18.4/bin"
PERLBREW_PERL="perl-5.18.4"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.84"
PERLBREW_VERSION="0.84"
PERL_AUTOINSTALL="--defaultdeps"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
@INC:
/home/njh/perl5/perlbrew/perls/perl-5.18.4/lib/site_perl/5.18.4/armv7l-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.18.4/lib/site_perl/5.18.4
/home/njh/perl5/perlbrew/perls/perl-5.18.4/lib/5.18.4/armv7l-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.18.4/lib/5.18.4
.