BioPerl-DB v1.006900 Perl 5 v5.27.9 MSWin32-x86-multi-thread-64int
- Status
- Fail
- From
- Alexandr Ciornii (CHORNY)
- Dist
-
BioPerl-DB v1.006900
- Platform
- Perl 5 v5.27.9 MSWin32-x86-multi-thread-64int
- Date
- 2018-03-25 08:05:50
- ID
- c390c897-6cb1-1014-9a1d-8f293d76b4a0
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for BioPerl-DB-1.006900
on perl 5.27.9, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from 'C:\Strawberry279\perl\bin\perl.exe ./Build test':
DBI connect('database=bioseqdb;host=127.0.0.1;port=3306','root',...) failed: Can't connect to MySQL server on '127.0.0.1' (10061) at C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm line 265.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: t\01dbadaptor.t:25
-----------------------------------------------------------
# Looks like your test exited with 255 just after 8.
t\01dbadaptor.t ...
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 15/23 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio\DB\BioSQL\mysql\SpeciesAdaptorDriver.pm:220
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\02species.t:29
-----------------------------------------------------------
# Looks like your test exited with 255 just after 7.
t\02species.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 60/67 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t\03simpleseq.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 8.
t\03simpleseq.t ...
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 62/70 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 78.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 78.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 78.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 78.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 78.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 78.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 78.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 78.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 78.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 78.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 78.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 78.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 78.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 78.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 78.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 78.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 78.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 78.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 78.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 78.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 78.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 78.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 78.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 78.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 78.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 78.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 78.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 78.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 78.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 78.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 78.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 78.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 78.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 78.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 78.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 78.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 78.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 78.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 78.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\04swiss.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 8.
t\04swiss.t .......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 47/55 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 72.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 72.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 72.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 72.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 72.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 72.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 72.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 72.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 72.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 72.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 72.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 72.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 72.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 72.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 72.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 72.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 72.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 72.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 72.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 72.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 72.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 72.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 72.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 72.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 72.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 72.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 72.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 72.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 72.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 72.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 72.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 72.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 72.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 72.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 72.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 72.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 72.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 72.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 72.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\05seqfeature.t:42
-----------------------------------------------------------
# Looks like your test exited with 255 just after 6.
t\05seqfeature.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 46/52 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 72.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 72.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 72.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 72.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 72.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 72.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 72.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 72.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 72.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 72.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 72.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 72.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 72.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 72.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 72.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 72.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 72.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 72.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 72.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 72.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 72.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 72.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 72.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 72.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 72.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 72.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 72.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 72.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 72.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 72.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 72.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 72.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 72.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 72.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 72.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 72.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 72.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 72.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 72.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\06comment.t:25
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t\06comment.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 9/14 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 72.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 72.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 72.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 72.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 72.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 72.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 72.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 72.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 72.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 72.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 72.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 72.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 72.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 72.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 72.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 72.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 72.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 72.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 72.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 72.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 72.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 72.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 72.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 72.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 72.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 72.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 72.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 72.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 72.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 72.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 72.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 72.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 72.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 72.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 72.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 72.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 72.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 72.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 72.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t\07dblink.t:23
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t\07dblink.t ......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 16/21 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 72.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 72.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 72.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 72.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 72.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 72.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 72.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 72.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 72.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 72.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 72.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 72.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 72.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 72.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 72.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 72.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 72.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 72.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 72.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 72.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 72.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 72.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 72.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 72.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 72.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 72.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 72.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 72.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 72.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 72.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 72.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 72.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 72.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 72.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 72.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 72.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 72.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 72.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 72.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t\08genbank.t:30
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t\08genbank.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 18/23 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 64.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 64.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 64.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 64.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 64.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 64.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 64.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 64.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 64.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 64.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 64.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 64.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 64.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 64.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 64.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 64.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 64.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 64.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 64.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 64.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 64.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 64.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 64.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 64.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 64.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 64.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 64.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 64.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 64.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 64.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 64.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 64.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 64.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 64.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 64.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 64.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 64.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 64.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 64.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\09fuzzy2.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 4.
t\09fuzzy2.t ......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 19/23 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 1420.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 1420.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 1420.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 1420.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 1420.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 1420.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 1420.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 1420.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 1420.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 1420.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 1420.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 1420.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 1420.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 1420.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 1420.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 1420.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 1420.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 1420.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 1420.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 1420.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 1420.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 1420.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 1420.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 1420.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 1420.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 1420.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 1420.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 1420.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 1420.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 1420.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 1420.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 1420.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 1420.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 1420.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 1420.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 1420.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 1420.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 1420.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 1420.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t\10ensembl.t:26
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t\10ensembl.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 13/18 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 1.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 1.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 1.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 1.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 1.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 1.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 1.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 1.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 1.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 1.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 1.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 1.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 1.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 1.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 1.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 1.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 1.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 1.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 1.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 1.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 1.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 1.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 1.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 1.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 1.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 1.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 1.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 1.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 1.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 1.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 1.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 1.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 1.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 1.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 1.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 1.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 1.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 1.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 1.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\11locuslink.t:30
-----------------------------------------------------------
# Looks like your test exited with 255 just after 7.
t\11locuslink.t ...
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 106/113 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\12ontology.t:35
-----------------------------------------------------------
# Looks like your test exited with 255 just after 6.
t\12ontology.t ....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 734/740 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 41.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 41.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 41.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 41.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 41.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 41.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 41.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 41.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 41.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 41.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 41.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 41.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 41.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 41.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 41.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 41.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 41.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 41.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 41.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 41.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 41.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 41.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 41.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 41.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 41.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 41.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 41.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 41.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 41.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 41.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 41.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 41.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 41.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 41.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 41.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 41.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 41.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 41.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 41.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\13remove.t:29
-----------------------------------------------------------
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: t\13remove.t:121
-----------------------------------------------------------
# Looks like your test exited with 255 just after 3.
t\13remove.t ......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 58/61 subtests
t\14query.t ....... ok
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 1.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 1.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 1.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 1.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 1.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 1.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 1.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 1.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 1.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 1.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 1.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 1.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 1.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 1.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 1.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 1.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 1.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 1.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 1.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 1.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 1.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 1.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 1.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 1.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 1.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 1.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 1.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 1.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 1.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 1.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 1.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 1.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 1.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 1.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 1.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 1.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 1.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 1.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 1.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t\15cluster.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 7.
t\15cluster.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 155/162 subtests
Subroutine new redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 120, <GEN0> line 72.
Subroutine classification redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 176, <GEN0> line 72.
Subroutine species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 274, <GEN0> line 72.
Subroutine genus redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 379, <GEN0> line 72.
Subroutine sub_species redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 409, <GEN0> line 72.
Subroutine variant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 457, <GEN0> line 72.
Subroutine binomial redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 492, <GEN0> line 72.
Subroutine validate_species_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 532, <GEN0> line 72.
Subroutine validate_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 541, <GEN0> line 72.
Subroutine organelle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 560, <GEN0> line 72.
Subroutine node_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 574, <GEN0> line 72.
Subroutine scientific_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 575, <GEN0> line 72.
Subroutine id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 577, <GEN0> line 72.
Subroutine object_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 578, <GEN0> line 72.
Subroutine ncbi_taxid redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 579, <GEN0> line 72.
Subroutine rank redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 580, <GEN0> line 72.
Subroutine division redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 581, <GEN0> line 72.
Subroutine common_names redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 583, <GEN0> line 72.
Subroutine common_name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 584, <GEN0> line 72.
Subroutine genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 586, <GEN0> line 72.
Subroutine mitochondrial_genetic_code redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 587, <GEN0> line 72.
Subroutine create_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 589, <GEN0> line 72.
Subroutine pub_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 590, <GEN0> line 72.
Subroutine update_date redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 591, <GEN0> line 72.
Subroutine db_handle redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 593, <GEN0> line 72.
Subroutine parent_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 595, <GEN0> line 72.
Subroutine parent_taxon_id redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 596, <GEN0> line 72.
Subroutine version redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 598, <GEN0> line 72.
Subroutine authority redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 599, <GEN0> line 72.
Subroutine namespace redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 600, <GEN0> line 72.
Subroutine ancestor redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 602, <GEN0> line 72.
Subroutine get_Parent_Node redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 603, <GEN0> line 72.
Subroutine each_Descendent redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 604, <GEN0> line 72.
Subroutine get_Children_Nodes redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 605, <GEN0> line 72.
Subroutine remove_Descendant redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 606, <GEN0> line 72.
Subroutine name redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 608, <GEN0> line 72.
Subroutine taxon redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 621, <GEN0> line 72.
Subroutine tree redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 641, <GEN0> line 72.
Subroutine DESTROY redefined at C:/Strawberry279/perl/site/lib/Bio\Species.pm line 651, <GEN0> line 72.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (10061)
STACK: Error::throw
STACK: Bio::Root::Root::throw C:/Strawberry279/perl/site/lib/Bio\Root\Root.pm:447
STACK: Bio::DB::DBI::base::new_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/DBI/base.pm:228
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store C:\STRAWB~1\cpan\build\BioPerl-DB-1.006900-0\blib\lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t\16obda.t:36
-----------------------------------------------------------
# Looks like your test exited with 255 just after 6.
t\16obda.t ........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 10/16 subtests
Test Summary Report
-------------------
t\01dbadaptor.t (Wstat: 65280 Tests: 8 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 8.
t\02species.t (Wstat: 65280 Tests: 7 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 67 tests but ran 7.
t\03simpleseq.t (Wstat: 65280 Tests: 8 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 70 tests but ran 8.
t\04swiss.t (Wstat: 65280 Tests: 8 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 55 tests but ran 8.
t\05seqfeature.t (Wstat: 65280 Tests: 6 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 52 tests but ran 6.
t\06comment.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 14 tests but ran 5.
t\07dblink.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 21 tests but ran 5.
t\08genbank.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 5.
t\09fuzzy2.t (Wstat: 65280 Tests: 4 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 4.
t\10ensembl.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 18 tests but ran 5.
t\11locuslink.t (Wstat: 65280 Tests: 7 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 113 tests but ran 7.
t\12ontology.t (Wstat: 65280 Tests: 6 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 740 tests but ran 6.
t\13remove.t (Wstat: 65280 Tests: 3 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 61 tests but ran 3.
t\15cluster.t (Wstat: 65280 Tests: 7 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 162 tests but ran 7.
t\16obda.t (Wstat: 65280 Tests: 6 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 16 tests but ran 6.
Files=16, Tests=113, 32 wallclock secs ( 0.10 usr + 0.05 sys = 0.15 CPU)
Result: FAIL
Failed 15/16 test programs. 0/113 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ -------- --------
Bio::Root::Version 1.006900 1.007002
DBI 0 1.640
perl v5.6.1 5.027009
configure_requires:
Module Need Have
------------------ -------- --------
Module::Build 0.38 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
COMSPEC = C:\WINDOWS\system32\cmd.exe
NUMBER_OF_PROCESSORS = 1
PATH = C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Git\cmd;C:\Strawberry279\c\bin;C:\Strawberry279\perl\site\bin;C:\Strawberry279\perl\bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 178832
PERL5_CPAN_IS_RUNNING = 178832
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1548,178832
PERL_CR_SMOKER_CURRENT = BioPerl-DB-1.006900
PERL_CR_SMOKER_RUNONCE = 1
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
PROCESSOR_IDENTIFIER = x86 Family 18 Model 1 Stepping 0, AuthenticAMD
TEMP = C:\DOCUME~1\a\LOCALS~1\Temp
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = C:\Strawberry279\perl\bin\perl.exe
$UID/$EUID = 0 / 0
$GID = 0
$EGID = 0
Win32::GetOSName = WinXP/.Net
Win32::GetOSVersion = Service Pack 3, 5, 1, 2600, 2, 3, 0, 256, 1
Win32::FsType = NTFS
Win32::IsAdminUser = 1
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.20
CPAN::Meta 2.150010
Cwd 3.74
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.32
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.32
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.38
File::Spec 3.74
JSON 2.97001
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.41
Test::More 1.302125
YAML 1.24
YAML::Syck 1.30
version 0.9918
--
Summary of my perl5 (revision 5 version 27 subversion 9) configuration:
Platform:
osname=MSWin32
osvers=5.1.2600
archname=MSWin32-x86-multi-thread-64int
uname='Win32 strawberry-perl 5.27.9.1-beta1 #1 Wed Feb 21 04:24:03 2018 i386'
config_args='undef'
hint=recommended
useposix=true
d_sigaction=undef
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=undef
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='gcc'
ccflags =' -s -O2 -DWIN32 -D__USE_MINGW_ANSI_STDIO -DPERL_TEXTMODE_SCRIPTS -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -DUSE_PERLIO -fwrapv -fno-strict-aliasing -mms-bitfields'
optimize='-s -O2'
cppflags='-DWIN32'
ccversion=''
gccversion='7.1.0'
gccosandvers=''
intsize=4
longsize=4
ptrsize=4
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=12
longdblkind=3
ivtype='long long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='long long'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='g++'
ldflags ='-s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib"'
libpth=C:\STRAWB~1\c\lib C:\STRAWB~1\c\i686-w64-mingw32\lib C:\STRAWB~1\c\lib\gcc\i686-w64-mingw32\7.1.0
libs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
perllibs= -lmoldname -lkernel32 -luser32 -lgdi32 -lwinspool -lcomdlg32 -ladvapi32 -lshell32 -lole32 -loleaut32 -lnetapi32 -luuid -lws2_32 -lmpr -lwinmm -lversion -lodbc32 -lodbccp32 -lcomctl32
libc=
so=dll
useshrplib=true
libperl=libperl527.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_win32.xs
dlext=xs.dll
d_dlsymun=undef
ccdlflags=' '
cccdlflags=' '
lddlflags='-mdll -s -L"C:\STRAWB~1\perl\lib\CORE" -L"C:\STRAWB~1\c\lib"'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
HAVE_INTERP_INTERN
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT
PERL_IMPLICIT_SYS
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under MSWin32
Compiled at Feb 21 2018 04:34:26
%ENV:
PERL5_CPANPLUS_IS_RUNNING="178832"
PERL5_CPAN_IS_RUNNING="178832"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="1548,178832"
PERL_CR_SMOKER_CURRENT="BioPerl-DB-1.006900"
PERL_CR_SMOKER_RUNONCE="1"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
C:/Strawberry279/perl/site/lib
C:/Strawberry279/perl/vendor/lib
C:/Strawberry279/perl/lib
.