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From: metabase:user:30f4dfbe-2aae-11df-837a-5e0a49663a4f
Subject: FAIL SemMed-Interface-0.05 v5.16.2 Mac OS X
Date: 2016-10-14T11:10:03Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Andriy Mulyar,
This is a computer-generated report for SemMed-Interface-0.05
on perl 5.16.2, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/sw/bin/make test':
PERL_DL_NONLAZY=1 "/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
Bailout called. Further testing stopped:
# Failed test 'use SemMed::Interface;'
# at t/00-load.t line 10.
# Tried to use 'SemMed::Interface'.
# Error: Can't locate UMLS/Association.pm in @INC (@INC contains: /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/lib /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/arch /Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/arch /Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/lib /Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/arch /Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/lib /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/site_perl/5.16.2/darwin-2level /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/site_perl/5.16.2 /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/5.16.2/darwin-2level /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/5.16.2) at /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/lib/SemMed/Interface/DataAccess.pm line 10.
# BEGIN failed--compilation aborted at /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/lib/SemMed/Interface/DataAccess.pm line 10.
# Compilation failed in require at /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/lib/SemMed/Interface/GraphTraversal.pm line 11.
# BEGIN failed--compilation aborted at /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/lib/SemMed/Interface/GraphTraversal.pm line 11.
# Compilation failed in require at /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/lib/SemMed/Interface.pm line 90.
# BEGIN failed--compilation aborted at /Users/hornenj/.cpan/build/SemMed-Interface-0.05-OPuUXW/blib/lib/SemMed/Interface.pm line 90.
# Compilation failed in require at t/00-load.t line 10.
# BEGIN failed--compilation aborted at t/00-load.t line 10.
Use of uninitialized value $SemMed::Interface::VERSION in concatenation (.) or string at t/00-load.t line 13.
# Looks like your test exited with 255 just after 1.
FAILED--Further testing stopped.
make: *** [Makefile:862: test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- ----
Heap::Priority 0 0.01
build_requires:
Module Need Have
------------------- ---- ----
ExtUtils::MakeMaker 0 7.22
configure_requires:
Module Need Have
------------------- ---- ----
ExtUtils::MakeMaker 0 7.22
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LC_ALL = POSIX
LDFLAGS =
PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin:/Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/bin:/sw/lib/perl5/ExtUtils:/sw/bin:/am/ncbiapdata/bin:/usr/bin:/bin:/usr/X11R6/bin:/netopt/ncbi_tools/bin:/usr/local/ncbi/blast/bin:/net/traces01.be-md.ncbi.nlm.nih.gov/trace_software/vdb/mac/release/x86_64/bin
PERL5LIB = /Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/arch:/Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 77086
PERL5_CPAN_IS_RUNNING = 77086
PERL5_MINISMOKEBOX = 0.58
PERLBREW_BASHRC_VERSION = 0.76
PERLBREW_HOME = /Users/hornenj/.perlbrew
PERLBREW_LIB =
PERLBREW_MANPATH = /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/man
PERLBREW_PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin
PERLBREW_PERL = perl-5.16.2
PERLBREW_ROOT = /Users/hornenj/perl5/perlbrew
PERLBREW_VERSION = 0.76
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_LOCAL_LIB_ROOT =
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm-256color
TMPDIR = /var/folders/pz/pd7y1qjs6s3cbk170cw50fjc000c61/T/
ac_cv_path_INTLTOOL_PERL = /usr/bin/perl
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin/perl
$UID/$EUID = 12481 / 12481
$GID = 14 14 5344 37191 527 37223 241
$EGID = 14 14 5344 37191 527 37223 241
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.10
CPAN::Meta 2.150005
Cwd 3.47
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.22
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.22
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.47
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4214
Module::Signature n/a
Parse::CPAN::Meta 1.4422
Test::Harness 3.36
Test::More 1.302059
YAML 1.15
YAML::Syck 1.29
version 0.9912
--
Summary of my perl5 (revision 5 version 16 subversion 2) configuration:
Platform:
osname=darwin, osvers=12.2.1, archname=darwin-2level
uname='darwin ncbimac2008.ncbi.nlm.nih.gov 12.2.1 darwin kernel version 12.2.1: thu oct 18 12:13:47 pdt 2012; root:xnu-2050.20.9~1release_x86_64 x86_64 '
config_args='-de -Dprefix=/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2'
hint=previous, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector',
optimize='-O3',
cppflags='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector -fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector'
ccversion='', gccversion='4.2.1 Compatible Apple LLVM 4.2 (clang-425.0.24)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -fstack-protector'
libpth=/usr/lib
libs=-ldbm -ldl -lm -lutil -lc
perllibs=-ldl -lm -lutil -lc
libc=, so=dylib, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP PERL_PRESERVE_IVUV USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_LOCALE
USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_PERLIO USE_PERL_ATOF
Built under darwin
Compiled at Mar 4 2013 16:03:07
%ENV:
PERL5LIB="/Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/arch:/Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="77086"
PERL5_CPAN_IS_RUNNING="77086"
PERL5_MINISMOKEBOX="0.58"
PERLBREW_BASHRC_VERSION="0.76"
PERLBREW_HOME="/Users/hornenj/.perlbrew"
PERLBREW_LIB=""
PERLBREW_MANPATH="/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/man"
PERLBREW_PATH="/Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/bin"
PERLBREW_PERL="perl-5.16.2"
PERLBREW_ROOT="/Users/hornenj/perl5/perlbrew"
PERLBREW_VERSION="0.76"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_LOCAL_LIB_ROOT=""
PERL_MM_USE_DEFAULT="1"
@INC:
/Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/arch
/Users/hornenj/.cpan/build/Heap-Priority-0.01-Y7m6RK/blib/lib
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/site_perl/5.16.2/darwin-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/site_perl/5.16.2
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/5.16.2/darwin-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.16.2/lib/5.16.2
.