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From: metabase:user:917c2b6a-77f3-11e5-af78-c9d573d1e3cf
Subject: FAIL BioX-CLPM-0.01 v5.22.1 Mac OS X
Date: 2015-12-24T00:52:58Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Nathan Mark Crabtree,
This is a computer-generated report for BioX-CLPM-0.01
on perl 5.22.1, created by CPAN-Reporter-1.2015.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Failed test 'use BioX::CLPM;'
# at t/00.load.t line 4.
# Tried to use 'BioX::CLPM'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/arch /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1 /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1 .) at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Base.pm line 2.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Base.pm line 2.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM.pm line 2.
# Compilation failed in require at t/00.load.t line 4.
# BEGIN failed--compilation aborted at t/00.load.t line 4.
# Failed test 'use BioX::CLPM::Engine;'
# at t/00.load.t line 5.
# Tried to use 'BioX::CLPM::Engine'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Engine.pm line 2.
# Compilation failed in require at t/00.load.t line 5.
# BEGIN failed--compilation aborted at t/00.load.t line 5.
# Failed test 'use BioX::CLPM::Peaks;'
# at t/00.load.t line 6.
# Tried to use 'BioX::CLPM::Peaks'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/arch /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1 /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1 .) at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Peaks.pm line 3.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Peaks.pm line 3.
# Compilation failed in require at t/00.load.t line 6.
# BEGIN failed--compilation aborted at t/00.load.t line 6.
# Failed test 'use BioX::CLPM::Linker;'
# at t/00.load.t line 7.
# Tried to use 'BioX::CLPM::Linker'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Linker.pm line 2.
# Compilation failed in require at t/00.load.t line 7.
# BEGIN failed--compilation aborted at t/00.load.t line 7.
# Failed test 'use BioX::CLPM::Enzyme;'
# at t/00.load.t line 8.
# Tried to use 'BioX::CLPM::Enzyme'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Enzyme.pm line 2.
# Compilation failed in require at t/00.load.t line 8.
# BEGIN failed--compilation aborted at t/00.load.t line 8.
# Failed test 'use BioX::CLPM::Amino;'
# at t/00.load.t line 9.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at t/00.load.t line 9.
# BEGIN failed--compilation aborted at t/00.load.t line 9.
# Failed test 'use BioX::CLPM::Sequence;'
# at t/00.load.t line 10.
# Tried to use 'BioX::CLPM::Sequence'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Sequence.pm line 2.
# Compilation failed in require at t/00.load.t line 10.
# BEGIN failed--compilation aborted at t/00.load.t line 10.
# Failed test 'use BioX::CLPM::Fragments;'
# at t/00.load.t line 11.
# Tried to use 'BioX::CLPM::Fragments'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Fragments.pm line 2.
# Compilation failed in require at t/00.load.t line 11.
# BEGIN failed--compilation aborted at t/00.load.t line 11.
# Failed test 'use BioX::CLPM::Fragments::Simple;'
# at t/00.load.t line 12.
# Tried to use 'BioX::CLPM::Fragments::Simple'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/arch /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1 /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1 .) at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Fragments/Simple.pm line 3.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Fragments/Simple.pm line 3.
# Compilation failed in require at t/00.load.t line 12.
# BEGIN failed--compilation aborted at t/00.load.t line 12.
# Failed test 'use BioX::CLPM::Fragments::Linked;'
# at t/00.load.t line 13.
# Tried to use 'BioX::CLPM::Fragments::Linked'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/arch /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1 /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1 .) at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Fragments/Linked.pm line 3.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Fragments/Linked.pm line 3.
# Compilation failed in require at t/00.load.t line 13.
# BEGIN failed--compilation aborted at t/00.load.t line 13.
# Failed test 'use BioX::CLPM::Matches;'
# at t/00.load.t line 14.
# Tried to use 'BioX::CLPM::Matches'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/arch /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1 /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1 .) at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Matches.pm line 3.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Matches.pm line 3.
# Compilation failed in require at t/00.load.t line 14.
# BEGIN failed--compilation aborted at t/00.load.t line 14.
# Failed test 'use BioX::CLPM::Base;'
# at t/00.load.t line 15.
# Tried to use 'BioX::CLPM::Base'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at t/00.load.t line 15.
# BEGIN failed--compilation aborted at t/00.load.t line 15.
# Testing BioX::CLPM
# Looks like you failed 12 tests of 12.
t/00.load.t ...
Dubious, test returned 12 (wstat 3072, 0xc00)
Failed 12/12 subtests
# Failed test 'use BioX::CLPM::Amino;'
# at t/01.amino.t line 4.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Can't locate Class/Std.pm in @INC (you may need to install the Class::Std module) (@INC contains: /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/arch /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1 /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/darwin-2level /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1 .) at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Base.pm line 2.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Base.pm line 2.
# Compilation failed in require at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 99.
# ...propagated at /Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/base.pm line 108.
# BEGIN failed--compilation aborted at /Users/petr/.cpan/build/BioX-CLPM-Dj1Ba9/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at t/01.amino.t line 4.
# BEGIN failed--compilation aborted at t/01.amino.t line 4.
Can't locate object method "new" via package "BioX::CLPM::Amino" at t/01.amino.t line 7.
# Looks like you planned 2 tests but ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test exited with 255 just after 1.
t/01.amino.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 2/2 subtests
Test Summary Report
-------------------
t/00.load.t (Wstat: 3072 Tests: 12 Failed: 12)
Failed tests: 1-12
Non-zero exit status: 12
t/01.amino.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 2 tests but ran 1.
Files=2, Tests=13, 0 wallclock secs ( 0.03 usr 0.02 sys + 0.06 cusr 0.03 csys = 0.14 CPU)
Result: FAIL
Failed 2/2 test programs. 13/13 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- --------
Test::More 0 1.001014
version 0 0.9909
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = cs_CZ.UTF-8
PATH = /Users/petr/perl5/perlbrew/bin:/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 64357
PERL5_CPAN_IS_RUNNING = 64357
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 981,64357
PERLBREW_BASHRC_VERSION = 0.74
PERLBREW_HOME = /Users/petr/.perlbrew
PERLBREW_MANPATH = /Users/petr/perl5/perlbrew/perls/perl-5.22.1/man
PERLBREW_PATH = /Users/petr/perl5/perlbrew/bin:/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin
PERLBREW_PERL = perl-5.22.1
PERLBREW_ROOT = /Users/petr/perl5/perlbrew
PERLBREW_VERSION = 0.74
PERL_CR_SMOKER_CURRENT = BioX-CLPM-0.01
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm-256color
TMPDIR = /var/folders/x5/mbl5nhls3z779qkgqvdxmbqc0000gn/T/
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin/perl
$UID/$EUID = 501 / 501
$GID = 20 20 701 12 61 79 80 81 98 33 100 204 395 398 399
$EGID = 20 20 701 12 61 79 80 81 98 33 100 204 395 398 399
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.11
CPAN::Meta 2.150001
Cwd 3.56
ExtUtils::CBuilder 0.280221
ExtUtils::Command 1.20
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.04_01
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.28
File::Spec 3.56
JSON 2.90
JSON::PP 2.27300
Module::Build 0.4214
Module::Signature n/a
Parse::CPAN::Meta 1.4414
Test::Harness 3.35
Test::More 1.001014
YAML 1.15
YAML::Syck 1.29
version 0.9909
--
Summary of my perl5 (revision 5 version 22 subversion 1) configuration:
Platform:
osname=darwin, osvers=15.2.0, archname=darwin-2level
uname='darwin mac.local 15.2.0 darwin kernel version 15.2.0: fri nov 13 19:56:56 pst 2015; root:xnu-3248.20.55~2release_x86_64 x86_64 '
config_args='-de -Dprefix=/Users/petr/perl5/perlbrew/perls/perl-5.22.1 -Aeval:scriptdir=/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include',
optimize='-O3',
cppflags='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.1.76)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/7.0.0/lib /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib /usr/lib
libs=-lpthread -ldbm -ldl -lm -lutil -lc
perllibs=-lpthread -ldl -lm -lutil -lc
libc=, so=dylib, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
Devel::PatchPerl 1.38
Built under darwin
Compiled at Dec 16 2015 09:24:44
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="64357"
PERL5_CPAN_IS_RUNNING="64357"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="981,64357"
PERLBREW_BASHRC_VERSION="0.74"
PERLBREW_HOME="/Users/petr/.perlbrew"
PERLBREW_MANPATH="/Users/petr/perl5/perlbrew/perls/perl-5.22.1/man"
PERLBREW_PATH="/Users/petr/perl5/perlbrew/bin:/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin"
PERLBREW_PERL="perl-5.22.1"
PERLBREW_ROOT="/Users/petr/perl5/perlbrew"
PERLBREW_VERSION="0.74"
PERL_CR_SMOKER_CURRENT="BioX-CLPM-0.01"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1/darwin-2level
/Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/site_perl/5.22.1
/Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1/darwin-2level
/Users/petr/perl5/perlbrew/perls/perl-5.22.1/lib/5.22.1
.