Bio-FastParsers v0.180470 Perl 5 v5.28.0 darwin-thread-multi-2level
- Status
- Pass
- From
- Nigel Horne
- Dist
-
Bio-FastParsers v0.180470
- Platform
- Perl 5 v5.28.0 darwin-thread-multi-2level
- Date
- 2018-08-31 02:22:08
- ID
- a92e4442-acc4-11e8-bf5e-4bae558d364c
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Denis BAURAIN,
This is a computer-generated report for Bio-FastParsers-0.180470
on perl 5.28.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/sw/bin/make test':
PERL_DL_NONLAZY=1 "/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
Warning: 'test/empty.xml' unexpectedly empty; returning no BlastOutput! at reader Bio::FastParsers::Blast::Xml::blast_output (defined at /Users/hornenj/.cpan/build/Bio-FastParsers-0.180470-1/blib/lib/Bio/FastParsers/Blast/Xml.pm line 20) line 8.
t/clusterable.t ......... ok
t/blast_xml.t ........... ok
t/hmmer_dom_table.t ..... ok
t/blast_table.t ......... ok
t/hmmer_model.t ......... ok
t/hmmer_std.t ........... ok
t/hmmer_table.t ......... ok
All tests successful.
Files=10, Tests=844, 2 wallclock secs ( 0.08 usr 0.03 sys + 3.72 cusr 1.48 csys = 5.31 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------------------------- ----- --------
aliased 0 0.34
autodie 0 2.29
Carp 0 1.50
Const::Fast 0 0.014
Exporter::Easy 0 0.18
feature 0 1.52
List::AllUtils 0 0.14
Moose 0 2.2011
Moose::Role 0 2.2011
Moose::Util::TypeConstraints 0 2.2011
namespace::autoclean 0 0.28
Path::Class 0 0.37
perl 5.010 5.028000
Smart::Comments 0 1.06
Sort::Naturally 0 1.03
strict 0 1.11
Test::Most 0 0.35
Tie::IxHash 0 1.23
Try::Tiny 0 0.30
warnings 0 1.42
XML::Bare 0.53 0.53
build_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 7.34
Test::Most 0 0.35
configure_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 7.34
perl 5.010 5.028000
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j4
LANG = en_US.UTF-8
LC_ALL = POSIX
NONINTERACTIVE_TESTING = 1
PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/bin:/Users/hornenj/homebrew/bin:/Users/hornenj/bin:/usr/bin:/bin:/usr/X11R6/bin:/sw/bin:/Users/hornenj/src/njh/smoker/bin
PERL5LIB = /Users/hornenj/.cpan/build/XML-Bare-0.53-1/blib/arch:/Users/hornenj/.cpan/build/XML-Bare-0.53-1/blib/lib:/Users/hornenj/.cpan/build/Tie-IxHash-1.23-1/blib/arch:/Users/hornenj/.cpan/build/Tie-IxHash-1.23-1/blib/lib:/Users/hornenj/.cpan/build/Sort-Naturally-1.03-1/blib/arch:/Users/hornenj/.cpan/build/Sort-Naturally-1.03-1/blib/lib:/Users/hornenj/.cpan/build/Smart-Comments-1.06-1/blib/arch:/Users/hornenj/.cpan/build/Smart-Comments-1.06-1/blib/lib:/Users/hornenj/.cpan/build/List-AllUtils-0.14-1/blib/arch:/Users/hornenj/.cpan/build/List-AllUtils-0.14-1/blib/lib:/Users/hornenj/.cpan/build/List-UtilsBy-0.11-1/blib/arch:/Users/hornenj/.cpan/build/List-UtilsBy-0.11-1/blib/lib:/Users/hornenj/.cpan/build/Exporter-Easy-0.18-1/blib/arch:/Users/hornenj/.cpan/build/Exporter-Easy-0.18-1/blib/lib:/Users/hornenj/.cpan/build/Const-Fast-0.014-0/blib/arch:/Users/hornenj/.cpan/build/Const-Fast-0.014-0/blib/lib:/Users/hornenj/.cpan/build/Algorithm-NeedlemanWunsch-0.04-1/blib/arch:/Users/hornenj/.cpan/build/Algorithm-NeedlemanWunsch-0.04-1/blib/lib:/Users/hornenj/.cpan/build/Math-Prime-Util-0.71-1/blib/arch:/Users/hornenj/.cpan/build/Math-Prime-Util-0.71-1/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 87666
PERL5_CPAN_IS_RUNNING = 87666
PERLBREW_HOME = /Users/hornenj/.perlbrew
PERLBREW_MANPATH = /Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/man
PERLBREW_PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/bin
PERLBREW_PERL = perl-5.28.0-thread
PERLBREW_ROOT = /Users/hornenj/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.84
PERLBREW_VERSION = 0.84
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/bash
TERM = xterm-256color
TMPDIR = /var/folders/pz/pd7y1qjs6s3cbk170cw50fjc000c61/T//testwrapper.87652
VERSIONER_PERL_PREFER_32_BIT = no
VERSIONER_PERL_VERSION = 5.18
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/bin/perl
$UID/$EUID = 12481 / 12481
$GID = 14 14 206 5344 37191 527 12 62 98 204 399 37223 241 223 100
$EGID = 14 14 206 5344 37191 527 12 62 98 204 399 37223 241 223 100
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.20
CPAN::Meta 2.150010
Cwd 3.74
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.34
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.34
ExtUtils::Manifest 1.71
ExtUtils::ParseXS 3.39
File::Spec 3.74
JSON 2.97001
JSON::PP 2.97001
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.42
Test::More 1.302136
YAML 1.26
YAML::Syck 1.30
version 0.9924
--
Summary of my perl5 (revision 5 version 28 subversion 0) configuration:
Platform:
osname=darwin
osvers=17.6.0
archname=darwin-thread-multi-2level
uname='darwin ncbimac2024 17.6.0 darwin kernel version 17.6.0: tue may 8 15:22:16 pdt 2018; root:xnu-4570.61.1~1release_x86_64 x86_64 '
config_args='-de -Dprefix=/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread -Dusethreads -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -ftree-vectorize -maes -mmmx -msse -mfpmath=sse -msse2 -msse3 -msse4.1 -msse4.2 -mssse3 -I/Users/hornenj/openssl/include -fdiagnostics-color=auto -mtune=native -march=native -Aeval:scriptdir=/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/bin'
hint=recommended
useposix=true
d_sigaction=define
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fno-common -DPERL_DARWIN -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -ftree-vectorize -maes -mmmx -msse -mfpmath=sse -msse2 -msse3 -msse4.1 -msse4.2 -mssse3 -I/Users/hornenj/openssl/include -fdiagnostics-color=auto -mtune=native -march=native -fno-strict-aliasing -fstack-protector-strong'
optimize='-O3'
cppflags='-fno-common -DPERL_DARWIN -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -fomit-frame-pointer -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -ftree-vectorize -maes -mmmx -msse -mfpmath=sse -msse2 -msse3 -msse4.1 -msse4.2 -mssse3 -I/Users/hornenj/openssl/include -fdiagnostics-color=auto -mtune=native -march=native -fno-strict-aliasing -fstack-protector-strong'
ccversion=''
gccversion='4.2.1 Compatible Apple LLVM 9.1.0 (clang-902.0.39.2)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/9.1.0/lib /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib /usr/lib /usr/local/lib
libs=-lpthread -ldbm -ldl -lm -lutil -lc
perllibs=-lpthread -ldl -lm -lutil -lc
libc=
so=dylib
useshrplib=false
libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=bundle
d_dlsymun=undef
ccdlflags=' '
cccdlflags=' '
lddlflags=' -bundle -undefined dynamic_lookup -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.30
Built under darwin
Compiled at Jun 25 2018 09:41:41
%ENV:
PERL5LIB="/Users/hornenj/.cpan/build/XML-Bare-0.53-1/blib/arch:/Users/hornenj/.cpan/build/XML-Bare-0.53-1/blib/lib:/Users/hornenj/.cpan/build/Tie-IxHash-1.23-1/blib/arch:/Users/hornenj/.cpan/build/Tie-IxHash-1.23-1/blib/lib:/Users/hornenj/.cpan/build/Sort-Naturally-1.03-1/blib/arch:/Users/hornenj/.cpan/build/Sort-Naturally-1.03-1/blib/lib:/Users/hornenj/.cpan/build/Smart-Comments-1.06-1/blib/arch:/Users/hornenj/.cpan/build/Smart-Comments-1.06-1/blib/lib:/Users/hornenj/.cpan/build/List-AllUtils-0.14-1/blib/arch:/Users/hornenj/.cpan/build/List-AllUtils-0.14-1/blib/lib:/Users/hornenj/.cpan/build/List-UtilsBy-0.11-1/blib/arch:/Users/hornenj/.cpan/build/List-UtilsBy-0.11-1/blib/lib:/Users/hornenj/.cpan/build/Exporter-Easy-0.18-1/blib/arch:/Users/hornenj/.cpan/build/Exporter-Easy-0.18-1/blib/lib:/Users/hornenj/.cpan/build/Const-Fast-0.014-0/blib/arch:/Users/hornenj/.cpan/build/Const-Fast-0.014-0/blib/lib:/Users/hornenj/.cpan/build/Algorithm-NeedlemanWunsch-0.04-1/blib/arch:/Users/hornenj/.cpan/build/Algorithm-NeedlemanWunsch-0.04-1/blib/lib:/Users/hornenj/.cpan/build/Math-Prime-Util-0.71-1/blib/arch:/Users/hornenj/.cpan/build/Math-Prime-Util-0.71-1/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="87666"
PERL5_CPAN_IS_RUNNING="87666"
PERLBREW_HOME="/Users/hornenj/.perlbrew"
PERLBREW_MANPATH="/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/man"
PERLBREW_PATH="/Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/bin"
PERLBREW_PERL="perl-5.28.0-thread"
PERLBREW_ROOT="/Users/hornenj/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.84"
PERLBREW_VERSION="0.84"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/Users/hornenj/.cpan/build/XML-Bare-0.53-1/blib/arch
/Users/hornenj/.cpan/build/XML-Bare-0.53-1/blib/lib
/Users/hornenj/.cpan/build/Tie-IxHash-1.23-1/blib/arch
/Users/hornenj/.cpan/build/Tie-IxHash-1.23-1/blib/lib
/Users/hornenj/.cpan/build/Sort-Naturally-1.03-1/blib/arch
/Users/hornenj/.cpan/build/Sort-Naturally-1.03-1/blib/lib
/Users/hornenj/.cpan/build/Smart-Comments-1.06-1/blib/arch
/Users/hornenj/.cpan/build/Smart-Comments-1.06-1/blib/lib
/Users/hornenj/.cpan/build/List-AllUtils-0.14-1/blib/arch
/Users/hornenj/.cpan/build/List-AllUtils-0.14-1/blib/lib
/Users/hornenj/.cpan/build/List-UtilsBy-0.11-1/blib/arch
/Users/hornenj/.cpan/build/List-UtilsBy-0.11-1/blib/lib
/Users/hornenj/.cpan/build/Exporter-Easy-0.18-1/blib/arch
/Users/hornenj/.cpan/build/Exporter-Easy-0.18-1/blib/lib
/Users/hornenj/.cpan/build/Const-Fast-0.014-0/blib/arch
/Users/hornenj/.cpan/build/Const-Fast-0.014-0/blib/lib
/Users/hornenj/.cpan/build/Algorithm-NeedlemanWunsch-0.04-1/blib/arch
/Users/hornenj/.cpan/build/Algorithm-NeedlemanWunsch-0.04-1/blib/lib
/Users/hornenj/.cpan/build/Math-Prime-Util-0.71-1/blib/arch
/Users/hornenj/.cpan/build/Math-Prime-Util-0.71-1/blib/lib
/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/lib/site_perl/5.28.0/darwin-thread-multi-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/lib/site_perl/5.28.0
/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/lib/5.28.0/darwin-thread-multi-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.28.0-thread/lib/5.28.0
.