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From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL BioX-SeqUtils-Promoter-0.1.1 v5.14.2 GNU/Linux
Date: 2012-09-16T20:18:17Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Charles Stephen Embry,
This is a computer-generated report for BioX-SeqUtils-Promoter-0.1.1
on perl 5.14.2, created by CPAN-Reporter-1.2006.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing BioX::SeqUtils::Promoter 0.1.1
t/00.load.t ....... ok
t/10.length.t ..... ok
# Failed test 'use BioX::SeqUtils::Promoter::Alignment;'
# at t/10.load.t line 10.
# Tried to use 'BioX::SeqUtils::Promoter::Alignment'.
# Error: Can't locate Bio/Tools/Run/Alignment/TCoffee.pm in @INC (@INC contains: /tmp/loop_over_bdir-3d9GD2/BioX-SeqUtils-Promoter-_RHYJO/blib/lib /tmp/loop_over_bdir-3d9GD2/BioX-SeqUtils-Promoter-_RHYJO/blib/arch /home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/site_perl/5.14.2/x86_64-linux /home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/site_perl/5.14.2 /home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/5.14.2/x86_64-linux /home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/5.14.2 .) at /tmp/loop_over_bdir-3d9GD2/BioX-SeqUtils-Promoter-_RHYJO/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 20.
# BEGIN failed--compilation aborted at /tmp/loop_over_bdir-3d9GD2/BioX-SeqUtils-Promoter-_RHYJO/blib/lib/BioX/SeqUtils/Promoter/Alignment.pm line 20.
# Compilation failed in require at t/10.load.t line 10.
# BEGIN failed--compilation aborted at t/10.load.t line 10.
# Failed test 'use BioX::SeqUtils::Promoter::SaveTypes::RImage;'
# at t/10.load.t line 58.
# Tried to use 'BioX::SeqUtils::Promoter::SaveTypes::RImage'.
# Error: Attempt to reload BioX/SeqUtils/Promoter/Alignment.pm aborted.
# Compilation failed in require at /tmp/loop_over_bdir-3d9GD2/BioX-SeqUtils-Promoter-_RHYJO/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# BEGIN failed--compilation aborted at /tmp/loop_over_bdir-3d9GD2/BioX-SeqUtils-Promoter-_RHYJO/blib/lib/BioX/SeqUtils/Promoter/SaveTypes/RImage.pm line 16.
# Compilation failed in require at t/10.load.t line 58.
# BEGIN failed--compilation aborted at t/10.load.t line 58.
# Testing BioX::SeqUtils::Promoter 0.1.1
# Testing BioX::SeqUtils::Promoter::Alignment
# Testing BioX::SeqUtils::Promoter::Annotations 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::CG 0.1.1
# Testing BioX::SeqUtils::Promoter::Annotations::Consensus 0.1.1
# Testing BioX::SeqUtils::Promoter::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::Base 0.1.1
# Testing BioX::SeqUtils::Promoter::SaveTypes::RImage
# Testing BioX::SeqUtils::Promoter::SaveTypes::Text 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequence 0.1.1
# Testing BioX::SeqUtils::Promoter::Sequences 0.1.1
# Looks like you failed 2 tests of 13.
t/10.load.t .......
Dubious, test returned 2 (wstat 512, 0x200)
Failed 2/13 subtests
t/10.sequence.t ... ok
t/10.sequences.t ..
Failed 1/2 subtests
t/11.new.t ........ ok
Test Summary Report
-------------------
t/10.load.t (Wstat: 512 Tests: 13 Failed: 2)
Failed tests: 2, 10
Non-zero exit status: 2
t/10.sequences.t (Wstat: 0 Tests: 1 Failed: 0)
Parse errors: Tests out of sequence. Found (2) but expected (1)
Bad plan. You planned 2 tests but ran 1.
Files=6, Tests=22, 1 wallclock secs ( 0.02 usr 0.01 sys + 0.21 cusr 0.07 csys = 0.31 CPU)
Result: FAIL
Failed 2/6 test programs. 2/22 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- -------
Test::More 0 0.98_03
version 0 0.9901
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en_US:en
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 18132
PERL5_CPAN_IS_RUNNING = 18132
PERL_MM_USE_DEFAULT = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /mnt/k75/homesand/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9800
CPAN::Meta 2.120921
Cwd 3.36
ExtUtils::CBuilder 0.280205
ExtUtils::Command 1.17
ExtUtils::Install 1.56
ExtUtils::MakeMaker 6.62
ExtUtils::Manifest 1.61
ExtUtils::ParseXS 3.15
File::Spec 3.33
JSON 2.53
JSON::PP 2.27200
Module::Build 0.4002
Module::Signature 0.68
Parse::CPAN::Meta 1.4404
Test::Harness 3.25
Test::More 0.98_03
YAML 0.84
YAML::Syck 1.21_01
version 0.9901
--
Summary of my perl5 (revision 5 version 14 subversion 2) configuration:
Commit id: dc281e6088d189558b79a5121119b7196c8b3db0
Platform:
osname=linux, osvers=3.2.0-1-amd64, archname=x86_64-linux
uname='linux k83 3.2.0-1-amd64 #1 smp fri feb 17 05:17:36 utc 2012 x86_64 gnulinux '
config_args='-Dprefix=/home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a -Dmyhostname=k83 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Uuseithreads -Uuselongdouble -DDEBUGGING=-g'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2 -g',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.6.3', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: PERL_DONT_CREATE_GVSV PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_USE_DEVEL USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Mar 20 2012 05:49:43
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="18132"
PERL5_CPAN_IS_RUNNING="18132"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/site_perl/5.14.2/x86_64-linux
/home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/site_perl/5.14.2
/home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/5.14.2/x86_64-linux
/home/src/perl/repoperls/installed-perls/perl/v5.14.2/165a/lib/5.14.2
.