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From: metabase:user:30f4dfbe-2aae-11df-837a-5e0a49663a4f
Subject: FAIL BioX-CLPM-0.01 v5.12.1 GNU/Linux
Date: 2012-07-09T03:03:24Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Nathan Mark Crabtree,
This is a computer-generated report for BioX-CLPM-0.01
on perl 5.12.1, created by CPAN-Reporter-1.2006.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Failed test 'use BioX::CLPM;'
# at t/00.load.t line 4.
# Tried to use 'BioX::CLPM'.
# Error: Can't locate Class/Std/Utils.pm in @INC (@INC contains: /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1 /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1 .) at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Base.pm line 3.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Base.pm line 3.
# Compilation failed in require at (eval 6) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM.pm line 2.
# Compilation failed in require at (eval 4) line 2.
# BEGIN failed--compilation aborted at (eval 4) line 2.
# Failed test 'use BioX::CLPM::Engine;'
# at t/00.load.t line 5.
# Tried to use 'BioX::CLPM::Engine'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 11) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Engine.pm line 2.
# Compilation failed in require at (eval 10) line 2.
# BEGIN failed--compilation aborted at (eval 10) line 2.
# Failed test 'use BioX::CLPM::Peaks;'
# at t/00.load.t line 6.
# Tried to use 'BioX::CLPM::Peaks'.
# Error: Can't locate Class/Std/Utils.pm in @INC (@INC contains: /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1 /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1 .) at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Peaks.pm line 4.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Peaks.pm line 4.
# Compilation failed in require at (eval 12) line 2.
# BEGIN failed--compilation aborted at (eval 12) line 2.
# Failed test 'use BioX::CLPM::Linker;'
# at t/00.load.t line 7.
# Tried to use 'BioX::CLPM::Linker'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 14) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Linker.pm line 2.
# Compilation failed in require at (eval 13) line 2.
# BEGIN failed--compilation aborted at (eval 13) line 2.
# Failed test 'use BioX::CLPM::Enzyme;'
# at t/00.load.t line 8.
# Tried to use 'BioX::CLPM::Enzyme'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 16) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Enzyme.pm line 2.
# Compilation failed in require at (eval 15) line 2.
# BEGIN failed--compilation aborted at (eval 15) line 2.
# Failed test 'use BioX::CLPM::Amino;'
# at t/00.load.t line 9.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 18) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at (eval 17) line 2.
# BEGIN failed--compilation aborted at (eval 17) line 2.
# Failed test 'use BioX::CLPM::Sequence;'
# at t/00.load.t line 10.
# Tried to use 'BioX::CLPM::Sequence'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 20) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Sequence.pm line 2.
# Compilation failed in require at (eval 19) line 2.
# BEGIN failed--compilation aborted at (eval 19) line 2.
# Failed test 'use BioX::CLPM::Fragments;'
# at t/00.load.t line 11.
# Tried to use 'BioX::CLPM::Fragments'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 22) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Fragments.pm line 2.
# Compilation failed in require at (eval 21) line 2.
# BEGIN failed--compilation aborted at (eval 21) line 2.
# Failed test 'use BioX::CLPM::Fragments::Simple;'
# at t/00.load.t line 12.
# Tried to use 'BioX::CLPM::Fragments::Simple'.
# Error: Can't locate Class/Std/Utils.pm in @INC (@INC contains: /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1 /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1 .) at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Fragments/Simple.pm line 4.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Fragments/Simple.pm line 4.
# Compilation failed in require at (eval 23) line 2.
# BEGIN failed--compilation aborted at (eval 23) line 2.
# Failed test 'use BioX::CLPM::Fragments::Linked;'
# at t/00.load.t line 13.
# Tried to use 'BioX::CLPM::Fragments::Linked'.
# Error: Can't locate Class/Std/Utils.pm in @INC (@INC contains: /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1 /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1 .) at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Fragments/Linked.pm line 4.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Fragments/Linked.pm line 4.
# Compilation failed in require at (eval 24) line 2.
# BEGIN failed--compilation aborted at (eval 24) line 2.
# Failed test 'use BioX::CLPM::Matches;'
# at t/00.load.t line 14.
# Tried to use 'BioX::CLPM::Matches'.
# Error: Can't locate Class/Std/Utils.pm in @INC (@INC contains: /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1 /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1 .) at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Matches.pm line 4.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Matches.pm line 4.
# Compilation failed in require at (eval 25) line 2.
# BEGIN failed--compilation aborted at (eval 25) line 2.
# Failed test 'use BioX::CLPM::Base;'
# at t/00.load.t line 15.
# Tried to use 'BioX::CLPM::Base'.
# Error: Attempt to reload BioX/CLPM/Base.pm aborted.
# Compilation failed in require at (eval 26) line 2.
# BEGIN failed--compilation aborted at (eval 26) line 2.
# Testing BioX::CLPM
# Looks like you failed 12 tests of 12.
t/00.load.t ...
Dubious, test returned 12 (wstat 3072, 0xc00)
Failed 12/12 subtests
# Failed test 'use BioX::CLPM::Amino;'
# at t/01.amino.t line 4.
# Tried to use 'BioX::CLPM::Amino'.
# Error: Can't locate Class/Std/Utils.pm in @INC (@INC contains: /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/arch /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1 /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/x86_64-linux /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1 .) at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Base.pm line 3.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Base.pm line 3.
# Compilation failed in require at (eval 6) line 2.
# ...propagated at /home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/base.pm line 84.
# BEGIN failed--compilation aborted at /home/njh/.cpan/build/BioX-CLPM-C1HWXA/blib/lib/BioX/CLPM/Amino.pm line 2.
# Compilation failed in require at (eval 4) line 2.
# BEGIN failed--compilation aborted at (eval 4) line 2.
Can't locate object method "new" via package "BioX::CLPM::Amino" at t/01.amino.t line 7.
# Looks like you planned 2 tests but ran 1.
# Looks like you failed 1 test of 1 run.
# Looks like your test exited with 255 just after 1.
t/01.amino.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 2/2 subtests
Test Summary Report
-------------------
t/00.load.t (Wstat: 3072 Tests: 12 Failed: 12)
Failed tests: 1-12
Non-zero exit status: 12
t/01.amino.t (Wstat: 65280 Tests: 1 Failed: 1)
Failed test: 1
Non-zero exit status: 255
Parse errors: Bad plan. You planned 2 tests but ran 1.
Files=2, Tests=13, 0 wallclock secs ( 0.01 usr 0.00 sys + 0.05 cusr 0.00 csys = 0.06 CPU)
Result: FAIL
Failed 2/2 test programs. 13/13 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------- ---- ----
Test::More 0 0.98
version 0 0.99
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB.UTF-8
LANGUAGE = en_GB:en
LD_LIBRARY_PATH = :/usr/local/lib:/usr/lib/qt-3.3/lib:/usr/X11R6/lib
MANPATH_WITHOUT_PERLBREW = :/usr/local/man:/home/njh/man:/usr/share/inn/man:/usr/share/perl5/man:/usr/share/tcl-8.0/man:/usr/share/tclX-8.0.4/man:/usr/share/tix-4.1/man:/usr/share/tk-8.0/man:/usr/server/doc:/usr/share/man:/opt/intel/cc/9.1.038/man
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.12.1/bin:/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.17.1/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/njh/bin
PATH_WITHOUT_PERLBREW = /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/home/njh/bin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 3654
PERL5_CPAN_IS_RUNNING = 3654
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 9343,3654
PERLBREW_BASHRC_VERSION = 0.44
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_LIB =
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.12.1/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.12.1/bin
PERLBREW_PERL = perl-5.12.1
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_VERSION = 0.44
PERL_CR_SMOKER_CURRENT = BioX-CLPM-0.01
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_LOCAL_LIB_ROOT =
PERL_MB_OPT =
PERL_MM_OPT =
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = linux
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/njh/perl5/perlbrew/perls/perl-5.12.1/bin/perl
$UID/$EUID = 1000 / 1000
$GID = 1000 24 25 29 30 44 46 108 112 1000
$EGID = 1000 24 25 29 30 44 46 108 112 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.9800
CPAN::Meta 2.120921
Cwd 3.33
ExtUtils::CBuilder 0.280205
ExtUtils::Command 1.17
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.62
ExtUtils::Manifest 1.60
ExtUtils::ParseXS 3.15
File::Spec 3.33
JSON 2.53
JSON::PP 2.27200
Module::Build 0.4001
Module::Signature 0.68
Parse::CPAN::Meta 1.4404
Test::Harness 3.25
Test::More 0.98
YAML 0.81
YAML::Syck 1.20
version 0.99
--
Summary of my perl5 (revision 5 version 12 subversion 1) configuration:
Platform:
osname=linux, osvers=3.1.0-1-amd64, archname=x86_64-linux
uname='linux gateway 3.1.0-1-amd64 #1 smp tue jan 10 05:01:58 utc 2012 x86_64 gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.12.1 -D_FORTIFY_SOURCE=2 -Accflags=-O2'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-O2 -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-O2 -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.6.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -ldb -ldl -lm -lcrypt -lutil -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fPIC', lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: PERL_DONT_CREATE_GVSV PERL_MALLOC_WRAP USE_64_BIT_ALL
USE_64_BIT_INT USE_LARGE_FILES USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Jan 16 2012 11:59:16
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="3654"
PERL5_CPAN_IS_RUNNING="3654"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="9343,3654"
PERLBREW_BASHRC_VERSION="0.44"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_LIB=""
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.12.1/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.12.1/bin"
PERLBREW_PERL="perl-5.12.1"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_VERSION="0.44"
PERL_CR_SMOKER_CURRENT="BioX-CLPM-0.01"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_LOCAL_LIB_ROOT=""
PERL_MB_OPT=""
PERL_MM_OPT=""
PERL_MM_USE_DEFAULT="1"
@INC:
/home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1/x86_64-linux
/home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/site_perl/5.12.1
/home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1/x86_64-linux
/home/njh/perl5/perlbrew/perls/perl-5.12.1/lib/5.12.1
.