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From: metabase:user:30f4dfbe-2aae-11df-837a-5e0a49663a4f
Subject: UNKNOWN Bio-DB-HTS-2.5 v5.14.3 Mac OS X
Date: 2016-10-21T00:02:20Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Rishi Nag,
This is a computer-generated report for Bio-DB-HTS-2.5
on perl 5.14.3, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, attempting to
test your distribution gave an inconclusive result.
This could be because your distribution had an error during the make/build
stage, did not define tests, tests could not be found, because your tests were
interrupted before they finished, or because the results of the tests could not
be parsed. You may wish to consult the CPAN Testers Wiki:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin/perl5.14.3 Build.PL':
compilet-nWfcz.c:1:5: warning: no previous prototype for function 'boot_compilet' [-Wmissing-prototypes]
int boot_compilet() { return 1; }
^
1 warning generated.
ld: warning: object file (compilet-nWfcz.o) was built for newer OSX version (10.11) than being linked (10.4)
Checking prerequisites...
requires:
! Bio::Root::Version is not installed
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
This module requires htslib (http://htslib/org)
Install it if you have not done so already.
This script will attempt to locate htslib by looking for hts.h and libhts.a in:
1. --htslib command line argument
2. HTSLIB_DIR environment variable
3. --prefix command line argument (which also sets installation location)
4. Alien::HTSlib dependency resolver
5. pkg-config (extra directories can be set in PKG_CONFIG_PATH environment variable)
6. common library locations: /usr /usr/local, /usr/share, /opt/local
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
configure_requires:
Module Need Have
------------- ---- ------
Module::Build 0.42 0.4214
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LC_ALL = POSIX
LDFLAGS =
PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin:/Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/bin:/sw/lib/perl5/ExtUtils:/sw/bin:/am/ncbiapdata/bin:/usr/bin:/bin:/usr/X11R6/bin:/netopt/ncbi_tools/bin:/usr/local/ncbi/blast/bin:/net/traces01.be-md.ncbi.nlm.nih.gov/trace_software/vdb/mac/release/x86_64/bin
PERL = /Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin/perl5.14.3
PERL5LIB =
PERL5OPT = -I/var/folders/pz/pd7y1qjs6s3cbk170cw50fjc000c61/T/CPAN-Reporter-lib-iw7l -MDevel::Autoflush
PERL5_CPANPLUS_IS_RUNNING = 94620
PERL5_CPAN_IS_EXECUTING =
PERL5_CPAN_IS_RUNNING = 94620
PERL5_MINISMOKEBOX = 0.58
PERLBREW_BASHRC_VERSION = 0.76
PERLBREW_HOME = /Users/hornenj/.perlbrew
PERLBREW_LIB =
PERLBREW_MANPATH = /Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/man
PERLBREW_PATH = /Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin
PERLBREW_PERL = perl-5.14.3
PERLBREW_ROOT = /Users/hornenj/perl5/perlbrew
PERLBREW_VERSION = 0.76
PERL_AUTOINSTALL = --defaultdeps
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_LOCAL_LIB_ROOT =
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = xterm-256color
TMPDIR = /var/folders/pz/pd7y1qjs6s3cbk170cw50fjc000c61/T/
ac_cv_path_INTLTOOL_PERL = /usr/bin/perl
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin/perl5.14.3
$UID/$EUID = 12481 / 12481
$GID = 14 14 5344 37191 527 37223 241
$EGID = 14 14 5344 37191 527 37223 241
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.10
CPAN::Meta 2.150005
Cwd 3.47
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.22
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.22
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.47
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4214
Module::Signature n/a
Parse::CPAN::Meta 1.4422
Test::Harness 3.36
Test::More 1.302059
YAML 1.15
YAML::Syck 1.29
version 0.9912
--
Summary of my perl5 (revision 5 version 14 subversion 3) configuration:
Platform:
osname=darwin, osvers=14.3.0, archname=darwin-thread-multi-2level
uname='darwin ncbimac2027.ncbi.nlm.nih.gov 14.3.0 darwin kernel version 14.3.0: mon mar 23 11:59:05 pdt 2015; root:xnu-2782.20.48~5release_x86_64 x86_64 '
config_args='-de -Dprefix=/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3 -Duseithreads -Dusemultiplicity -Dusedevel -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fassociative-math -Acc=cc -Aeval:scriptdir=/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin'
hint=recommended, useposix=true, d_sigaction=define
useithreads=define, usemultiplicity=define
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=define, use64bitall=define, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc=' cc', ccflags ='-fno-common -DPERL_DARWIN -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fassociative-math -fno-strict-aliasing -I/usr/local/include',
optimize='-O3',
cppflags='-fno-common -DPERL_DARWIN -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -pedantic -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -fassociative-math -fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib
libs=-ldbm -ldl -lm -lutil -lc
perllibs=-ldl -lm -lutil -lc
libc=, so=dylib, useshrplib=false, libperl=libperl.a
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP
PERL_PRESERVE_IVUV PERL_USE_DEVEL USE_64_BIT_ALL
USE_64_BIT_INT USE_ITHREADS USE_LARGE_FILES
USE_PERLIO USE_PERL_ATOF USE_REENTRANT_API
Locally applied patches:
Devel::PatchPerl 1.30
Built under darwin
Compiled at Apr 20 2015 10:10:59
%ENV:
PERL="/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin/perl5.14.3"
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="94620"
PERL5_CPAN_IS_EXECUTING=""
PERL5_CPAN_IS_RUNNING="94620"
PERL5_MINISMOKEBOX="0.58"
PERLBREW_BASHRC_VERSION="0.76"
PERLBREW_HOME="/Users/hornenj/.perlbrew"
PERLBREW_LIB=""
PERLBREW_MANPATH="/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/man"
PERLBREW_PATH="/Users/hornenj/perl5/perlbrew/bin:/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/bin"
PERLBREW_PERL="perl-5.14.3"
PERLBREW_ROOT="/Users/hornenj/perl5/perlbrew"
PERLBREW_VERSION="0.76"
PERL_AUTOINSTALL="--defaultdeps"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_LOCAL_LIB_ROOT=""
PERL_MM_USE_DEFAULT="1"
@INC:
/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/lib/site_perl/5.14.3/darwin-thread-multi-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/lib/site_perl/5.14.3
/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/lib/5.14.3/darwin-thread-multi-2level
/Users/hornenj/perl5/perlbrew/perls/perl-5.14.3/lib/5.14.3
.