Bio-FastParsers v0.180470 Perl 5 v5.26.0 x86_64-linux-thread-multi
- Status
- Pass
- From
- Nigel Horne
- Dist
-
Bio-FastParsers v0.180470
- Platform
- Perl 5 v5.26.0 x86_64-linux-thread-multi
- Date
- 2018-03-04 02:27:48
- ID
- a1a7c42c-1f53-11e8-9917-f16481200c9d
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Denis BAURAIN,
This is a computer-generated report for Bio-FastParsers-0.180470
on perl 5.26.0, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. Congratulations!
All tests were successful.
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/home/njh/perl5/perlbrew/perls/perl-5.26.0/bin/perl5.26.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/author-critic.t ....... skipped: these tests are for testing by the author
t/author-pod-syntax.t ... skipped: these tests are for testing by the author
t/author-portability.t .. skipped: these tests are for testing by the author
Warning: 'test/empty.xml' unexpectedly empty; returning no BlastOutput! at reader Bio::FastParsers::Blast::Xml::blast_output (defined at /tmp/build/Bio-FastParsers-0.180470-5/blib/lib/Bio/FastParsers/Blast/Xml.pm line 20) line 8.
t/hmmer_model.t ......... ok
t/hmmer_dom_table.t ..... ok
t/clusterable.t ......... ok
t/hmmer_table.t ......... ok
t/hmmer_std.t ........... ok
t/blast_table.t ......... ok
t/blast_xml.t ........... ok
All tests successful.
Files=10, Tests=844, 1 wallclock secs ( 0.06 usr 0.01 sys + 3.35 cusr 0.58 csys = 4.00 CPU)
Result: PASS
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
---------------------------- ----- --------
aliased 0 0.34
autodie 0 2.29
Carp 0 1.42
Const::Fast 0 0.014
Exporter::Easy 0 0.18
feature 0 1.47
List::AllUtils 0 0.14
Moose 0 2.2006
Moose::Role 0 2.2006
Moose::Util::TypeConstraints 0 2.2006
namespace::autoclean 0 0.28
Path::Class 0 0.37
perl 5.010 5.026000
Smart::Comments 0 1.06
Sort::Naturally 0 1.03
strict 0 1.11
Test::Most 0 0.35
Tie::IxHash 0 1.23
Try::Tiny 0 0.28
warnings 0 1.37
XML::Bare 0.53 0.53
build_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 7.30
Test::Most 0 0.35
configure_requires:
Module Need Have
---------------------------- ----- --------
ExtUtils::MakeMaker 0 7.30
perl 5.010 5.026000
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
HARNESS_OPTIONS = j10
LANG = en_GB.UTF-8
PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.26.0/bin:src/njh/smoker/bin:/usr/bin:/bin
PERL5LIB = /tmp/build/XML-Bare-0.53-5/blib/arch:/tmp/build/XML-Bare-0.53-5/blib/lib:/tmp/build/Tie-IxHash-1.23-5/blib/arch:/tmp/build/Tie-IxHash-1.23-5/blib/lib:/tmp/build/Sort-Naturally-1.03-5/blib/arch:/tmp/build/Sort-Naturally-1.03-5/blib/lib:/tmp/build/Smart-Comments-1.06-5/blib/arch:/tmp/build/Smart-Comments-1.06-5/blib/lib:/tmp/build/Path-Class-0.37-11/blib/arch:/tmp/build/Path-Class-0.37-11/blib/lib:/tmp/build/List-AllUtils-0.14-5/blib/arch:/tmp/build/List-AllUtils-0.14-5/blib/lib:/tmp/build/List-UtilsBy-0.11-5/blib/arch:/tmp/build/List-UtilsBy-0.11-5/blib/lib:/tmp/build/Exporter-Easy-0.18-5/blib/arch:/tmp/build/Exporter-Easy-0.18-5/blib/lib:/tmp/build/Const-Fast-0.014-5/blib/arch:/tmp/build/Const-Fast-0.014-5/blib/lib:/tmp/build/Algorithm-NeedlemanWunsch-0.04-5/blib/arch:/tmp/build/Algorithm-NeedlemanWunsch-0.04-5/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 8520
PERL5_CPAN_IS_RUNNING = 8520
PERLBREW_HOME = /home/njh/.perlbrew
PERLBREW_MANPATH = /home/njh/perl5/perlbrew/perls/perl-5.26.0/man
PERLBREW_PATH = /home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.26.0/bin
PERLBREW_PERL = perl-5.26.0
PERLBREW_ROOT = /home/njh/perl5/perlbrew
PERLBREW_SHELLRC_VERSION = 0.82
PERLBREW_VERSION = 0.82
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/sh
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/njh/perl5/perlbrew/perls/perl-5.26.0/bin/perl5.26.0
$UID/$EUID = 1000 / 1000
$GID = 1000 4 24 25 29 30 44 46 107 112 118 1000
$EGID = 1000 4 24 25 29 30 44 46 107 112 118 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.18
CPAN::Meta 2.150010
Cwd 3.67
ExtUtils::CBuilder 0.280226
ExtUtils::Command 7.30
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.35
File::Spec 3.67
JSON 2.94
JSON::PP 2.94
Module::Build 0.4224
Module::Signature n/a
Parse::CPAN::Meta 2.150010
Test::Harness 3.39
Test::More 1.302106
YAML 1.24
YAML::Syck 1.30
version 0.9918
--
Summary of my perl5 (revision 5 version 26 subversion 0) configuration:
Platform:
osname=linux
osvers=4.9.0-3-amd64
archname=x86_64-linux-thread-multi
uname='linux microcenter 4.9.0-3-amd64 #1 smp debian 4.9.25-1 (2017-05-02) x86_64 gnulinux '
config_args='-de -Dprefix=/home/njh/perl5/perlbrew/perls/perl-5.26.0 -Duseithreads -Dusemultiplicity -Dusedevel -Accflags=-O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -mfpmath=sse -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -ftree-vectorize -fdiagnostics-color=auto -Aeval:scriptdir=/home/njh/perl5/perlbrew/perls/perl-5.26.0/bin'
hint=recommended
useposix=true
d_sigaction=define
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -mfpmath=sse -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -ftree-vectorize -fdiagnostics-color=auto -fwrapv -fno-strict-aliasing -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64'
optimize='-O2'
cppflags='-D_REENTRANT -D_GNU_SOURCE -O2 -W -Wformat=2 -Wswitch -Wshadow -Wwrite-strings -Wuninitialized -Wall -pipe -mtune=native -march=native -fomit-frame-pointer -msse2 -msse -mmmx -mfpmath=sse -D_FORTIFY_SOURCE=2 -Wpointer-arith -Wstrict-prototypes -fstack-protector -Wstack-protector -Wextra -Wbad-function-cast -Wcast-align -Wcast-qual -Wdisabled-optimization -Wendif-labels -Wfloat-equal -Wformat-nonliteral -Winline -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wpointer-arith -Wundef -Wformat-security -ftree-vectorize -fdiagnostics-color=auto -fwrapv -fno-strict-aliasing -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='6.3.0 20170516'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/6/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
USE_64_BIT_ALL
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
USE_REENTRANT_API
Built under linux
Compiled at Jun 1 2017 23:16:30
%ENV:
PERL5LIB="/tmp/build/XML-Bare-0.53-5/blib/arch:/tmp/build/XML-Bare-0.53-5/blib/lib:/tmp/build/Tie-IxHash-1.23-5/blib/arch:/tmp/build/Tie-IxHash-1.23-5/blib/lib:/tmp/build/Sort-Naturally-1.03-5/blib/arch:/tmp/build/Sort-Naturally-1.03-5/blib/lib:/tmp/build/Smart-Comments-1.06-5/blib/arch:/tmp/build/Smart-Comments-1.06-5/blib/lib:/tmp/build/Path-Class-0.37-11/blib/arch:/tmp/build/Path-Class-0.37-11/blib/lib:/tmp/build/List-AllUtils-0.14-5/blib/arch:/tmp/build/List-AllUtils-0.14-5/blib/lib:/tmp/build/List-UtilsBy-0.11-5/blib/arch:/tmp/build/List-UtilsBy-0.11-5/blib/lib:/tmp/build/Exporter-Easy-0.18-5/blib/arch:/tmp/build/Exporter-Easy-0.18-5/blib/lib:/tmp/build/Const-Fast-0.014-5/blib/arch:/tmp/build/Const-Fast-0.014-5/blib/lib:/tmp/build/Algorithm-NeedlemanWunsch-0.04-5/blib/arch:/tmp/build/Algorithm-NeedlemanWunsch-0.04-5/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="8520"
PERL5_CPAN_IS_RUNNING="8520"
PERLBREW_HOME="/home/njh/.perlbrew"
PERLBREW_MANPATH="/home/njh/perl5/perlbrew/perls/perl-5.26.0/man"
PERLBREW_PATH="/home/njh/perl5/perlbrew/bin:/home/njh/perl5/perlbrew/perls/perl-5.26.0/bin"
PERLBREW_PERL="perl-5.26.0"
PERLBREW_ROOT="/home/njh/perl5/perlbrew"
PERLBREW_SHELLRC_VERSION="0.82"
PERLBREW_VERSION="0.82"
PERL_USE_UNSAFE_INC="1"
@INC:
/tmp/build/XML-Bare-0.53-5/blib/arch
/tmp/build/XML-Bare-0.53-5/blib/lib
/tmp/build/Tie-IxHash-1.23-5/blib/arch
/tmp/build/Tie-IxHash-1.23-5/blib/lib
/tmp/build/Sort-Naturally-1.03-5/blib/arch
/tmp/build/Sort-Naturally-1.03-5/blib/lib
/tmp/build/Smart-Comments-1.06-5/blib/arch
/tmp/build/Smart-Comments-1.06-5/blib/lib
/tmp/build/Path-Class-0.37-11/blib/arch
/tmp/build/Path-Class-0.37-11/blib/lib
/tmp/build/List-AllUtils-0.14-5/blib/arch
/tmp/build/List-AllUtils-0.14-5/blib/lib
/tmp/build/List-UtilsBy-0.11-5/blib/arch
/tmp/build/List-UtilsBy-0.11-5/blib/lib
/tmp/build/Exporter-Easy-0.18-5/blib/arch
/tmp/build/Exporter-Easy-0.18-5/blib/lib
/tmp/build/Const-Fast-0.014-5/blib/arch
/tmp/build/Const-Fast-0.014-5/blib/lib
/tmp/build/Algorithm-NeedlemanWunsch-0.04-5/blib/arch
/tmp/build/Algorithm-NeedlemanWunsch-0.04-5/blib/lib
/home/njh/perl5/perlbrew/perls/perl-5.26.0/lib/site_perl/5.26.0/x86_64-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.26.0/lib/site_perl/5.26.0
/home/njh/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux-thread-multi
/home/njh/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0
.