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From: metabase:user:320bfe00-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Data-Babel-Client-0.02 v5.8.7 GNU/Linux
Date: 2011-05-18T12:30:34Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Victor Cassen,
This is a computer-generated report for Data-Babel-Client-0.02
on perl 5.8.7, created by CPAN-Reporter-1.1902.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
# Testing Data::Babel::Client 0.02, Perl 5.008007, /home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56/bin/perl
t/00-load.t ............... ok
# Failed test 'found protein_uniprot_symbol'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_nature_name'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_reactome_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_reactome_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_ncbi_genbank'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_nature_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found function_go_description'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_kegg_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found sequence_agilent'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found gene_rgd'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found transcript_ncbi_genbank'
# at t/10-test_idtypes.t line 39.
# Failed test 'found probe_agilent'
# at t/10-test_idtypes.t line 39.
# Failed test 'found transcript_ncbi_genbank_gi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found gene_mgi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_ncbi_genbank_gi'
# at t/10-test_idtypes.t line 39.
# Failed test 'found protein_uniprot_description'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_kegg_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_agilent_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found publication_pubmed'
# at t/10-test_idtypes.t line 39.
# Failed test 'found pathway_biocarta_title'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_id'
# at t/10-test_idtypes.t line 39.
# Failed test 'found mutation_cosmic_mutated'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_lumi_gpl'
# at t/10-test_idtypes.t line 39.
# Failed test 'found chip_affy_id'
# at t/10-test_idtypes.t line 39.
# Looks like you failed 29 tests of 82.
t/10-test_idtypes.t .......
Dubious, test returned 29 (wstat 7424, 0x1d00)
Failed 29/82 subtests
t/11-test_translate.t ..... ok
t/12-test_missing_args.t .. ok
t/13-test_bad_args.t ...... ok
t/manifest.t .............. skipped: Author tests not required for installation
t/pod-coverage.t .......... ok
t/pod.t ................... ok
Test Summary Report
-------------------
t/10-test_idtypes.t (Wstat: 7424 Tests: 82 Failed: 29)
Failed tests: 2-3, 10-14, 17-21, 30, 35, 40-41, 48, 53
56-57, 60, 63-65, 68-69, 72-74
Non-zero exit status: 29
Files=8, Tests=125, 15 wallclock secs ( 0.06 usr 0.01 sys + 1.23 cusr 0.21 csys = 1.51 CPU)
Result: FAIL
Failed 1/8 test programs. 29/125 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
build_requires:
Module Need Have
--------------------- ---- ------
Carp 0 1.04
Class::AutoClass 1.54 1.54
Data::Dumper 0 2.128
HTTP::Request::Common 0 5.824
JSON 0 2.51
LWP::UserAgent 0 5.834
Test::More 0 0.98
configure_requires:
Module Need Have
--------------------- ---- ------
Module::Build 0.36 0.3800
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en_US:en
PATH = /usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 1709
PERL5_CPAN_IS_RUNNING = 1709
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/sand/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56/bin/perl
$UID/$EUID = 1001 / 1001
$GID = 1001 1001
$EGID = 1001 1001
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 1.97_51
Cwd 3.33
ExtUtils::CBuilder 0.280202
ExtUtils::Command 1.17
ExtUtils::Install 1.52
ExtUtils::MakeMaker 6.56
ExtUtils::Manifest 1.56
ExtUtils::ParseXS 2.2206
File::Spec 3.33
Module::Build 0.3800
Module::Signature 0.68
Test::Harness 3.23
Test::More 0.98
YAML 0.73
YAML::Syck 1.17
version 0.88
--
Summary of my perl5 (revision 5 version 8 subversion 7) configuration:
Platform:
osname=linux, osvers=2.6.32-5-amd64, archname=x86_64-linux-thread-multi-ld
uname='linux k81 2.6.32-5-amd64 #1 smp mon mar 7 21:35:22 utc 2011 x86_64 gnulinux '
config_args='-Dprefix=/home/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Duseithreads -Duselongdouble -DDEBUGGING=-g'
hint=recommended, useposix=true, d_sigaction=define
usethreads=define use5005threads=undef useithreads=define usemultiplicity=define
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=define
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS -fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='4.4.5', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='long double', nvsize=16, Off_t='off_t', lseeksize=8
alignbytes=16, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib /usr/lib
libs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lpthread -lc
libc=/lib/libc-2.11.2.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.11.2'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: MULTIPLICITY USE_ITHREADS USE_64_BIT_INT
USE_64_BIT_ALL USE_LONG_DOUBLE USE_LARGE_FILES
PERL_IMPLICIT_CONTEXT
Built under linux
Compiled at May 7 2011 10:57:49
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="1709"
PERL5_CPAN_IS_RUNNING="1709"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56/lib/5.8.7/x86_64-linux-thread-multi-ld
/home/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56/lib/5.8.7
/home/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56/lib/site_perl/5.8.7/x86_64-linux-thread-multi-ld
/home/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56/lib/site_perl/5.8.7
/home/src/perl/repoperls/installed-perls/perl/perl-5.8.7/2a56/lib/site_perl
.