Bio-PhyloXS vv0.1.0 Perl 5 v5.26.0 x86_64-linux
- Status
- Fail
- From
- raytestinger
- Dist
-
Bio-PhyloXS vv0.1.0
- Platform
- Perl 5 v5.26.0 x86_64-linux
- Date
- 2018-02-04 20:18:54
- ID
- 9F2FC396-09E8-11E8-8C8E-FB0299BE6370
From: "raytestinger" <testinger@yahoo.com>
X-Test-Reporter-Distfile: RVOSA/Bio-PhyloXS-v0.1.0.tar.gz
X-Test-Reporter-Perl: v5.26.0
Subject: FAIL Bio-PhyloXS-v0.1.0 x86_64-linux 4.10.0-30-generic
Report: This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear RVOSA,
This is a computer-generated report for Bio-PhyloXS-v0.1.0
on perl 5.26.0, created by App::cpanminus::reporter 0.17 (1.7043).
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '':
Building and testing Bio-PhyloXS-v0.1.0
cp lib/Bio/PhyloXS/NeXML/Writable.pm blib/lib/Bio/PhyloXS/NeXML/Writable.pm
cp lib/Bio/PhyloXS/Forest/Node.pm blib/lib/Bio/PhyloXS/Forest/Node.pm
cp lib/Bio/PhyloXS/Matrices/Character.pm blib/lib/Bio/PhyloXS/Matrices/Character.pm
cp lib/Bio/PhyloXS/Matrices/Matrix.pm blib/lib/Bio/PhyloXS/Matrices/Matrix.pm
cp lib/Bio/PhyloXS/Forest/Tree.pm blib/lib/Bio/PhyloXS/Forest/Tree.pm
cp lib/Bio/PhyloXS/Identifiable.pm blib/lib/Bio/PhyloXS/Identifiable.pm
cp lib/Bio/PhyloXS/Matrices/Datatype.pm blib/lib/Bio/PhyloXS/Matrices/Datatype.pm
cp lib/Bio/PhyloXS/Matrices/Datum.pm blib/lib/Bio/PhyloXS/Matrices/Datum.pm
cp lib/Bio/PhyloXS.pm blib/lib/Bio/PhyloXS.pm
cp lib/Bio/PhyloXS/Listable.pm blib/lib/Bio/PhyloXS/Listable.pm
cp lib/Bio/PhyloXS/Matrices/Characters.pm blib/lib/Bio/PhyloXS/Matrices/Characters.pm
cp lib/Bio/PhyloXS/Mediators/TaxaMediator.pm blib/lib/Bio/PhyloXS/Mediators/TaxaMediator.pm
cp lib/Bio/PhyloXS/Matrices/TypeSafeData.pm blib/lib/Bio/PhyloXS/Matrices/TypeSafeData.pm
cp lib/Bio/PhyloXS/Util/Exceptions.pm blib/lib/Bio/PhyloXS/Util/Exceptions.pm
Running Mkbootstrap for lib/Bio/PhyloXS ()
chmod 644 "lib/Bio/PhyloXS.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS.bs blib/arch/auto/Bio/PhyloXS/PhyloXS.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Forest/Node ()
chmod 644 "lib/Bio/PhyloXS/Forest/Node.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Forest/Node.bs blib/arch/auto/Bio/PhyloXS/Forest/Node/Node.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Forest/Tree ()
chmod 644 "lib/Bio/PhyloXS/Forest/Tree.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Forest/Tree.bs blib/arch/auto/Bio/PhyloXS/Forest/Tree/Tree.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Identifiable ()
chmod 644 "lib/Bio/PhyloXS/Identifiable.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Identifiable.bs blib/arch/auto/Bio/PhyloXS/Identifiable/Identifiable.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Listable ()
chmod 644 "lib/Bio/PhyloXS/Listable.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Listable.bs blib/arch/auto/Bio/PhyloXS/Listable/Listable.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Matrices/Character ()
chmod 644 "lib/Bio/PhyloXS/Matrices/Character.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Character.bs blib/arch/auto/Bio/PhyloXS/Matrices/Character/Character.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Matrices/Characters ()
chmod 644 "lib/Bio/PhyloXS/Matrices/Characters.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Characters.bs blib/arch/auto/Bio/PhyloXS/Matrices/Characters/Characters.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Matrices/Datatype ()
chmod 644 "lib/Bio/PhyloXS/Matrices/Datatype.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Datatype.bs blib/arch/auto/Bio/PhyloXS/Matrices/Datatype/Datatype.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Matrices/Datum ()
chmod 644 "lib/Bio/PhyloXS/Matrices/Datum.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Datum.bs blib/arch/auto/Bio/PhyloXS/Matrices/Datum/Datum.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Matrices/Matrix ()
chmod 644 "lib/Bio/PhyloXS/Matrices/Matrix.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Matrix.bs blib/arch/auto/Bio/PhyloXS/Matrices/Matrix/Matrix.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Matrices/TypeSafeData ()
chmod 644 "lib/Bio/PhyloXS/Matrices/TypeSafeData.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/TypeSafeData.bs blib/arch/auto/Bio/PhyloXS/Matrices/TypeSafeData/TypeSafeData.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Mediators/TaxaMediator ()
chmod 644 "lib/Bio/PhyloXS/Mediators/TaxaMediator.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Mediators/TaxaMediator.bs blib/arch/auto/Bio/PhyloXS/Mediators/TaxaMediator/TaxaMediator.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/NeXML/Writable ()
chmod 644 "lib/Bio/PhyloXS/NeXML/Writable.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/NeXML/Writable.bs blib/arch/auto/Bio/PhyloXS/NeXML/Writable/Writable.bs 644
Running Mkbootstrap for lib/Bio/PhyloXS/Util/Exceptions ()
chmod 644 "lib/Bio/PhyloXS/Util/Exceptions.bs"
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Util/Exceptions.bs blib/arch/auto/Bio/PhyloXS/Util/Exceptions/Exceptions.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS.xs > lib/Bio/PhyloXS.xsc
mv lib/Bio/PhyloXS.xsc lib/Bio/PhyloXS.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS.c -o lib/Bio/PhyloXS.o
rm -f blib/arch/auto/Bio/PhyloXS/PhyloXS.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS.o -o blib/arch/auto/Bio/PhyloXS/PhyloXS.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/PhyloXS.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Forest/Node.xs > lib/Bio/PhyloXS/Forest/Node.xsc
mv lib/Bio/PhyloXS/Forest/Node.xsc lib/Bio/PhyloXS/Forest/Node.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Forest/Node.c -o lib/Bio/PhyloXS/Forest/Node.o
rm -f blib/arch/auto/Bio/PhyloXS/Forest/Node/Node.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Forest/Node.o -o blib/arch/auto/Bio/PhyloXS/Forest/Node/Node.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Forest/Node/Node.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Forest/Tree.xs > lib/Bio/PhyloXS/Forest/Tree.xsc
mv lib/Bio/PhyloXS/Forest/Tree.xsc lib/Bio/PhyloXS/Forest/Tree.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Forest/Tree.c -o lib/Bio/PhyloXS/Forest/Tree.o
rm -f blib/arch/auto/Bio/PhyloXS/Forest/Tree/Tree.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Forest/Tree.o -o blib/arch/auto/Bio/PhyloXS/Forest/Tree/Tree.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Forest/Tree/Tree.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Identifiable.xs > lib/Bio/PhyloXS/Identifiable.xsc
mv lib/Bio/PhyloXS/Identifiable.xsc lib/Bio/PhyloXS/Identifiable.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Identifiable.c -o lib/Bio/PhyloXS/Identifiable.o
rm -f blib/arch/auto/Bio/PhyloXS/Identifiable/Identifiable.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Identifiable.o -o blib/arch/auto/Bio/PhyloXS/Identifiable/Identifiable.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Identifiable/Identifiable.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Listable.xs > lib/Bio/PhyloXS/Listable.xsc
mv lib/Bio/PhyloXS/Listable.xsc lib/Bio/PhyloXS/Listable.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Listable.c -o lib/Bio/PhyloXS/Listable.o
rm -f blib/arch/auto/Bio/PhyloXS/Listable/Listable.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Listable.o -o blib/arch/auto/Bio/PhyloXS/Listable/Listable.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Listable/Listable.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Matrices/Character.xs > lib/Bio/PhyloXS/Matrices/Character.xsc
mv lib/Bio/PhyloXS/Matrices/Character.xsc lib/Bio/PhyloXS/Matrices/Character.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Matrices/Character.c -o lib/Bio/PhyloXS/Matrices/Character.o
rm -f blib/arch/auto/Bio/PhyloXS/Matrices/Character/Character.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Matrices/Character.o -o blib/arch/auto/Bio/PhyloXS/Matrices/Character/Character.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Matrices/Character/Character.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Matrices/Characters.xs > lib/Bio/PhyloXS/Matrices/Characters.xsc
mv lib/Bio/PhyloXS/Matrices/Characters.xsc lib/Bio/PhyloXS/Matrices/Characters.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Matrices/Characters.c -o lib/Bio/PhyloXS/Matrices/Characters.o
rm -f blib/arch/auto/Bio/PhyloXS/Matrices/Characters/Characters.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Matrices/Characters.o -o blib/arch/auto/Bio/PhyloXS/Matrices/Characters/Characters.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Matrices/Characters/Characters.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Matrices/Datatype.xs > lib/Bio/PhyloXS/Matrices/Datatype.xsc
mv lib/Bio/PhyloXS/Matrices/Datatype.xsc lib/Bio/PhyloXS/Matrices/Datatype.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Matrices/Datatype.c -o lib/Bio/PhyloXS/Matrices/Datatype.o
rm -f blib/arch/auto/Bio/PhyloXS/Matrices/Datatype/Datatype.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Matrices/Datatype.o -o blib/arch/auto/Bio/PhyloXS/Matrices/Datatype/Datatype.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Matrices/Datatype/Datatype.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Matrices/Datum.xs > lib/Bio/PhyloXS/Matrices/Datum.xsc
mv lib/Bio/PhyloXS/Matrices/Datum.xsc lib/Bio/PhyloXS/Matrices/Datum.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Matrices/Datum.c -o lib/Bio/PhyloXS/Matrices/Datum.o
rm -f blib/arch/auto/Bio/PhyloXS/Matrices/Datum/Datum.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Matrices/Datum.o -o blib/arch/auto/Bio/PhyloXS/Matrices/Datum/Datum.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Matrices/Datum/Datum.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Matrices/Matrix.xs > lib/Bio/PhyloXS/Matrices/Matrix.xsc
mv lib/Bio/PhyloXS/Matrices/Matrix.xsc lib/Bio/PhyloXS/Matrices/Matrix.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Matrices/Matrix.c -o lib/Bio/PhyloXS/Matrices/Matrix.o
rm -f blib/arch/auto/Bio/PhyloXS/Matrices/Matrix/Matrix.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Matrices/Matrix.o -o blib/arch/auto/Bio/PhyloXS/Matrices/Matrix/Matrix.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Matrices/Matrix/Matrix.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Matrices/TypeSafeData.xs > lib/Bio/PhyloXS/Matrices/TypeSafeData.xsc
mv lib/Bio/PhyloXS/Matrices/TypeSafeData.xsc lib/Bio/PhyloXS/Matrices/TypeSafeData.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Matrices/TypeSafeData.c -o lib/Bio/PhyloXS/Matrices/TypeSafeData.o
rm -f blib/arch/auto/Bio/PhyloXS/Matrices/TypeSafeData/TypeSafeData.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Matrices/TypeSafeData.o -o blib/arch/auto/Bio/PhyloXS/Matrices/TypeSafeData/TypeSafeData.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Matrices/TypeSafeData/TypeSafeData.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Mediators/TaxaMediator.xs > lib/Bio/PhyloXS/Mediators/TaxaMediator.xsc
mv lib/Bio/PhyloXS/Mediators/TaxaMediator.xsc lib/Bio/PhyloXS/Mediators/TaxaMediator.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Mediators/TaxaMediator.c -o lib/Bio/PhyloXS/Mediators/TaxaMediator.o
rm -f blib/arch/auto/Bio/PhyloXS/Mediators/TaxaMediator/TaxaMediator.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Mediators/TaxaMediator.o -o blib/arch/auto/Bio/PhyloXS/Mediators/TaxaMediator/TaxaMediator.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Mediators/TaxaMediator/TaxaMediator.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/NeXML/Writable.xs > lib/Bio/PhyloXS/NeXML/Writable.xsc
mv lib/Bio/PhyloXS/NeXML/Writable.xsc lib/Bio/PhyloXS/NeXML/Writable.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/NeXML/Writable.c -o lib/Bio/PhyloXS/NeXML/Writable.o
rm -f blib/arch/auto/Bio/PhyloXS/NeXML/Writable/Writable.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/NeXML/Writable.o -o blib/arch/auto/Bio/PhyloXS/NeXML/Writable/Writable.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/NeXML/Writable/Writable.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/xsubpp" -typemap '/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/ExtUtils/typemap' -typemap '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/typemap' lib/Bio/PhyloXS/Util/Exceptions.xs > lib/Bio/PhyloXS/Util/Exceptions.xsc
mv lib/Bio/PhyloXS/Util/Exceptions.xsc lib/Bio/PhyloXS/Util/Exceptions.c
cc -c -Isrc -I. \
-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 \
-DVERSION=\"v0.1.0\" \
-DXS_VERSION=\"v0.1.0\" -fPIC "-I/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/CORE" lib/Bio/PhyloXS/Util/Exceptions.c -o lib/Bio/PhyloXS/Util/Exceptions.o
rm -f blib/arch/auto/Bio/PhyloXS/Util/Exceptions/Exceptions.so
cc -shared -O2 -L/usr/local/lib -fstack-protector-strong lib/Bio/PhyloXS/Util/Exceptions.o -o blib/arch/auto/Bio/PhyloXS/Util/Exceptions/Exceptions.so \
\
chmod 755 blib/arch/auto/Bio/PhyloXS/Util/Exceptions/Exceptions.so
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS.bs blib/arch/auto/Bio/PhyloXS/PhyloXS.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Forest/Node.bs blib/arch/auto/Bio/PhyloXS/Forest/Node/Node.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Forest/Tree.bs blib/arch/auto/Bio/PhyloXS/Forest/Tree/Tree.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Identifiable.bs blib/arch/auto/Bio/PhyloXS/Identifiable/Identifiable.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Listable.bs blib/arch/auto/Bio/PhyloXS/Listable/Listable.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Character.bs blib/arch/auto/Bio/PhyloXS/Matrices/Character/Character.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Characters.bs blib/arch/auto/Bio/PhyloXS/Matrices/Characters/Characters.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Datatype.bs blib/arch/auto/Bio/PhyloXS/Matrices/Datatype/Datatype.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Datum.bs blib/arch/auto/Bio/PhyloXS/Matrices/Datum/Datum.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/Matrix.bs blib/arch/auto/Bio/PhyloXS/Matrices/Matrix/Matrix.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Matrices/TypeSafeData.bs blib/arch/auto/Bio/PhyloXS/Matrices/TypeSafeData/TypeSafeData.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Mediators/TaxaMediator.bs blib/arch/auto/Bio/PhyloXS/Mediators/TaxaMediator/TaxaMediator.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/NeXML/Writable.bs blib/arch/auto/Bio/PhyloXS/NeXML/Writable/Writable.bs 644
"/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- lib/Bio/PhyloXS/Util/Exceptions.bs blib/arch/auto/Bio/PhyloXS/Util/Exceptions/Exceptions.bs 644
PERL_DL_NONLAZY=1 "/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
# Failed test 'use Bio::PhyloXS::Forest::Node;'
# at t/load.t line 3.
# Tried to use 'Bio::PhyloXS::Forest::Node'.
# Error: Can't load '/tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/arch/auto/Bio/PhyloXS/NeXML/Writable/Writable.so' for module Bio::PhyloXS::NeXML::Writable: /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/arch/auto/Bio/PhyloXS/NeXML/Writable/Writable.so: undefined symbol: initialize_identifiable at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux/DynaLoader.pm line 193.
# at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/NeXML/Writable.pm line 10.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Listable.pm line 16.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Forest/Node.pm line 16.
# Compilation failed in require at t/load.t line 3.
# BEGIN failed--compilation aborted at t/load.t line 3.
# Failed test 'use Bio::PhyloXS::Forest::Tree;'
# at t/load.t line 4.
# Tried to use 'Bio::PhyloXS::Forest::Tree'.
# Error: Attempt to reload Bio/PhyloXS/Listable.pm aborted.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Forest/Tree.pm line 16.
# Compilation failed in require at t/load.t line 4.
# BEGIN failed--compilation aborted at t/load.t line 4.
# Failed test 'use Bio::PhyloXS::Listable;'
# at t/load.t line 6.
# Tried to use 'Bio::PhyloXS::Listable'.
# Error: Attempt to reload Bio/PhyloXS/Listable.pm aborted.
# Compilation failed in require at t/load.t line 6.
# BEGIN failed--compilation aborted at t/load.t line 6.
# Failed test 'use Bio::PhyloXS::Matrices::Datatype;'
# at t/load.t line 7.
# Tried to use 'Bio::PhyloXS::Matrices::Datatype'.
# Error: Attempt to reload Bio/PhyloXS/NeXML/Writable.pm aborted.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Matrices/Datatype.pm line 16.
# Compilation failed in require at t/load.t line 7.
# BEGIN failed--compilation aborted at t/load.t line 7.
# Failed test 'use Bio::PhyloXS::NeXML::Writable;'
# at t/load.t line 8.
# Tried to use 'Bio::PhyloXS::NeXML::Writable'.
# Error: Attempt to reload Bio/PhyloXS/NeXML/Writable.pm aborted.
# Compilation failed in require at t/load.t line 8.
# BEGIN failed--compilation aborted at t/load.t line 8.
# Failed test 'use Bio::PhyloXS;'
# at t/load.t line 9.
# Tried to use 'Bio::PhyloXS'.
# Error: -------------------------- EXCEPTION ----------------------------
# Message: Can't register Bio::PhyloXS::Forest::Node - Attempt to reload Bio/PhyloXS/Forest/Node.pm aborted.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/site_perl/5.26.0/Bio/Phylo/Factory.pm line 157.
#
#
# An exception of type Bio::Phylo::Util::Exceptions::ExtensionError
# was thrown.
#
# This kind of error happens when an extension module can not be
# loaded.
#
# Refer to the Bio::Phylo::Util::Exceptions documentation for more
# information.
# ------------------------- STACK TRACE ---------------------------
# STACK: Bio::Phylo::Factory::register_class('Bio::Phylo::Factory=SCALAR(0xeee730)', 'Bio::PhyloXS::Forest::Node') called at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS.pm line 19
# STACK: Bio::PhyloXS::BEGIN() called at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS.pm line 21
# STACK: (eval)() called at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS.pm line 21
# STACK: (eval)() called at t/load.t line 9
# STACK: main::BEGIN() called at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS.pm line 21
# STACK: (eval)() called at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS.pm line 21
# STACK: (eval)() called at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/site_perl/5.26.0/Test/More.pm line 1031
# STACK: Test::More::_eval('package main;
# STACK: BEGIN { ${^WARNING_BITS} = $args[-1] if defined $args[-1] }
# STACK: #line 9 t/load.t
# STACK: use Bio::PhyloXS @{$args[0]};
# STACK: 1;
# STACK: ', 'ARRAY(0xe22c10)') called at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/site_perl/5.26.0/Test/More.pm line 1007
# STACK: Test::More::use_ok('Bio::PhyloXS') called at t/load.t line 9
# -----------------------------------------------------------------
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS.pm line 21.
# Compilation failed in require at t/load.t line 9.
# BEGIN failed--compilation aborted at t/load.t line 9.
# Failed test 'use Bio::PhyloXS::Matrices::Character;'
# at t/load.t line 11.
# Tried to use 'Bio::PhyloXS::Matrices::Character'.
# Error: Attempt to reload Bio/PhyloXS/Listable.pm aborted.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Matrices/TypeSafeData.pm line 16.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Matrices/Character.pm line 16.
# Compilation failed in require at t/load.t line 11.
# BEGIN failed--compilation aborted at t/load.t line 11.
# Failed test 'use Bio::PhyloXS::Matrices::Characters;'
# at t/load.t line 12.
# Tried to use 'Bio::PhyloXS::Matrices::Characters'.
# Error: Attempt to reload Bio/PhyloXS/Matrices/TypeSafeData.pm aborted.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Matrices/Characters.pm line 16.
# Compilation failed in require at t/load.t line 12.
# BEGIN failed--compilation aborted at t/load.t line 12.
# Failed test 'use Bio::PhyloXS::Matrices::Datum;'
# at t/load.t line 13.
# Tried to use 'Bio::PhyloXS::Matrices::Datum'.
# Error: Attempt to reload Bio/PhyloXS/Matrices/TypeSafeData.pm aborted.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Matrices/Datum.pm line 16.
# Compilation failed in require at t/load.t line 13.
# BEGIN failed--compilation aborted at t/load.t line 13.
# Failed test 'use Bio::PhyloXS::Matrices::Matrix;'
# at t/load.t line 14.
# Tried to use 'Bio::PhyloXS::Matrices::Matrix'.
# Error: Attempt to reload Bio/PhyloXS/Matrices/TypeSafeData.pm aborted.
# Compilation failed in require at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 100.
# ...propagated at /home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/base.pm line 109.
# BEGIN failed--compilation aborted at /tmp/8C4xVjr36_/work/1512707014.2362/Bio-PhyloXS-v0.1.0/blib/lib/Bio/PhyloXS/Matrices/Matrix.pm line 16.
# Compilation failed in require at t/load.t line 14.
# BEGIN failed--compilation aborted at t/load.t line 14.
# Failed test 'use Bio::PhyloXS::Matrices::TypeSafeData;'
# at t/load.t line 15.
# Tried to use 'Bio::PhyloXS::Matrices::TypeSafeData'.
# Error: Attempt to reload Bio/PhyloXS/Matrices/TypeSafeData.pm aborted.
# Compilation failed in require at t/load.t line 15.
# BEGIN failed--compilation aborted at t/load.t line 15.
# Looks like you failed 11 tests of 12.
t/load.t ..
Dubious, test returned 11 (wstat 2816, 0xb00)
Failed 11/12 subtests
Test Summary Report
-------------------
t/load.t (Wstat: 2816 Tests: 12 Failed: 11)
Failed tests: 1-2, 4-12
Non-zero exit status: 11
Files=1, Tests=12, 0 wallclock secs ( 0.03 usr 0.00 sys + 0.11 cusr 0.00 csys = 0.14 CPU)
Result: FAIL
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
No requirements found
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
LANGUAGE = en_US
NONINTERACTIVE_TESTING = 1
PATH = /home/ray/perl5/perlbrew/bin:/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin:/home/ray/bin:/home/ray/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
PERL5_CPANPLUS_IS_RUNNING = 12309
PERL5_CPAN_IS_RUNNING = 12309
PERLBREW_BASHRC_VERSION = 0.74
PERLBREW_HOME = /home/ray/.perlbrew
PERLBREW_MANPATH = /home/ray/perl5/perlbrew/perls/perl-5.26.0/man
PERLBREW_PATH = /home/ray/perl5/perlbrew/bin:/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin
PERLBREW_PERL = perl-5.26.0
PERLBREW_ROOT = /home/ray/perl5/perlbrew
PERLBREW_VERSION = 0.80
PERL_CPANM_HOME = /tmp/8C4xVjr36_
PERL_CPAN_REPORTER_CONFIG = /tmp/8C4xVjr36_/config.ini
SHELL = /bin/bash
TERM = xterm
Perl special variables (and OS-specific diagnostics, for MSWin32):
EGID = 1000 4 24 27 30 46 113 130 1000
EUID = 1000
EXECUTABLE_NAME = /home/ray/perl5/perlbrew/perls/perl-5.26.0/bin/perl
GID = 1000 4 24 27 30 46 113 130 1000
UID = 1000
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.18
CPAN::Meta 2.150010
Cwd 3.67
ExtUtils::CBuilder 0.280230
ExtUtils::Command 7.30
ExtUtils::Install 2.06
ExtUtils::MakeMaker 7.30
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.34
File::Spec 3.67
JSON 2.94
JSON::PP 2.97000
Module::Build 0.4224
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.39
Test::More 1.302120
YAML 1.24
YAML::Syck 1.30
version 0.9917
--
Summary of my perl5 (revision 5 version 26 subversion 0) configuration:
Platform:
osname=linux
osvers=4.10.0-30-generic
archname=x86_64-linux
uname='linux ray-hp-250-g5-notebook-pc 4.10.0-30-generic #34~16.04.1-ubuntu smp wed aug 2 02:13:56 utc 2017 x86_64 x86_64 x86_64 gnulinux '
config_args='-de -Dprefix=/home/ray/perl5/perlbrew/perls/perl-5.26.0 -Aeval:scriptdir=/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='5.4.0 20160609'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib/gcc/x86_64-linux-gnu/5/include-fixed /usr/include/x86_64-linux-gnu /usr/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.23.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.23'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Locally applied patches:
Devel::PatchPerl 1.48
Built under linux
Compiled at Aug 5 2017 21:05:23
%ENV:
PERL5_CPANPLUS_IS_RUNNING="12309"
PERL5_CPAN_IS_RUNNING="12309"
PERLBREW_BASHRC_VERSION="0.74"
PERLBREW_HOME="/home/ray/.perlbrew"
PERLBREW_MANPATH="/home/ray/perl5/perlbrew/perls/perl-5.26.0/man"
PERLBREW_PATH="/home/ray/perl5/perlbrew/bin:/home/ray/perl5/perlbrew/perls/perl-5.26.0/bin"
PERLBREW_PERL="perl-5.26.0"
PERLBREW_ROOT="/home/ray/perl5/perlbrew"
PERLBREW_VERSION="0.80"
PERL_CPANM_HOME="/tmp/8C4xVjr36_"
PERL_CPAN_REPORTER_CONFIG="/tmp/8C4xVjr36_/config.ini"
@INC:
/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/site_perl/5.26.0/x86_64-linux
/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/site_perl/5.26.0
/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0/x86_64-linux
/home/ray/perl5/perlbrew/perls/perl-5.26.0/lib/5.26.0