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From: metabase:user:322078bc-2aae-11df-837a-5e0a49663a4f
Subject: UNKNOWN Bio-BioStudio-2.00 v5.12.5 Debian GNU/kFreeBSD
Date: 2013-10-26T06:26:40Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear NOTDOCTOR,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9142. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'fetch':
Checking prerequisites...
requires:
! Bio::GeneDesign is not installed
! Bio::Root::Root is not installed
! Digest::MD5 (2.39) is installed, but we need version >= 2.51
! Text::Diff is not installed
! Time::Format is not installed
! URI::Escape is not installed
! YAML::Tiny is not installed
Checking optional features...
blast......disabled
requires:
! Bio::Tools::Run::StandAloneBlastPlus is not installed
cairo......disabled
requires:
! Cairo is not installed
! Font::FreeType is not installed
gbrowse....disabled
requires:
! Bio::Graphics::Browser2 is not installed
! Cache::FileCache is not installed
mysql......disabled
requires:
! DBD::mysql is not installed
! DBI is not installed
pg.........disabled
requires:
! DBD::Pg is not installed
! DBI is not installed
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Where should configuration files be installed? [/etc/BioStudio ]/etc/BioStudio
Where should scripts be installed? [/usr/local/bin/ ]/usr/local/bin/
Where should BioStudio write tmp files? [/tmp ]/tmp
Can't copy('gbrowse/conf_repository/repository_README.txt', 'blib/BioStudio/gbrowse/conf_repository/repository_README.txt'): No such file or directory at /home/cpan/pit/bare/perl-5.12.5/lib/site_perl/5.12.5/Module/Build/Base.pm line 5632.
BEGIN failed--compilation aborted at -e line 1.
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9142
CPANPLUS::Dist::Build 0.70
Cwd 3.40
ExtUtils::CBuilder 0.280212
ExtUtils::Command 1.16
ExtUtils::Install 1.55
ExtUtils::MakeMaker 6.78
ExtUtils::Manifest 1.63
ExtUtils::ParseXS 3.22
File::Spec 3.40
Module::Build 0.4007
Pod::Parser 1.37
Pod::Simple 3.14
Test::Harness 3.28
Test::More 0.98
version 0.9904
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 0.90.
Powered by minismokebox version 0.58
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB.UTF-8
LANGUAGE = en_GB:en
NONINTERACTIVE_TESTING = 1
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
PERL5_CPANPLUS_IS_RUNNING = 24152
PERL5_CPANPLUS_IS_VERSION = 0.9142
PERL5_MINISMOKEBOX = 0.58
PERL5_YACSMOKE_BASE = /home/cpan/pit/bare/conf/perl-5.12.5
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /home/cpan/pit/bare/perl-5.12.5/bin/perl
UID: $< = 1001
EUID: $> = 1001
GID: $( = 1001 1001
EGID: $) = 1001 1001
-------------------------------
--
Summary of my perl5 (revision 5 version 12 subversion 5) configuration:
Platform:
osname=gnukfreebsd, osvers=9.0-2-686, archname=i386-gnukfreebsd
uname='gnukfreebsd knurl 9.0-2-686 #0 sat nov 24 07:40:35 utc 2012 i386 i386 amd a6-3670 apu with radeon(tm) hd graphics gnukfreebsd '
config_args='-des -Dprefix=/home/cpan/pit/bare/perl-5.12.5'
hint=recommended, useposix=true, d_sigaction=define
useithreads=undef, usemultiplicity=undef
useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
use64bitint=undef, use64bitall=undef, uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
ccversion='', gccversion='4.7.2', gccosandvers=''
intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=4, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
libpth=/usr/local/lib /lib/i386-kfreebsd-gnu /lib /usr/lib/i386-kfreebsd-gnu /usr/lib
libs=-lnsl -lgdbm -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
libc=, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.13'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib -fstack-protector'
Characteristics of this binary (from libperl):
Compile-time options: PERL_DONT_CREATE_GVSV PERL_MALLOC_WRAP
USE_LARGE_FILES USE_PERLIO USE_PERL_ATOF
Built under gnukfreebsd
Compiled at Feb 24 2013 20:28:18
%ENV:
PERL5_CPANPLUS_IS_RUNNING="24152"
PERL5_CPANPLUS_IS_VERSION="0.9142"
PERL5_MINISMOKEBOX="0.58"
PERL5_YACSMOKE_BASE="/home/cpan/pit/bare/conf/perl-5.12.5"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/cpan/pit/bare/perl-5.12.5/lib/site_perl/5.12.5/i386-gnukfreebsd
/home/cpan/pit/bare/perl-5.12.5/lib/site_perl/5.12.5
/home/cpan/pit/bare/perl-5.12.5/lib/5.12.5/i386-gnukfreebsd
/home/cpan/pit/bare/perl-5.12.5/lib/5.12.5
.