Report for Bio-Chado-Schema-0.20000

From: metabase:user:917c2b6a-77f3-11e5-af78-c9d573d1e3cf
Subject: PASS Bio-Chado-Schema-0.20000 v5.22.1 Mac OS X
Date: 2015-12-25T05:36:57Z

This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language.  See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org


--
Dear Robert Buels,

This is a computer-generated report for Bio-Chado-Schema-0.20000
on perl 5.22.1, created by CPAN-Reporter-1.2015.

Thank you for uploading your work to CPAN.  Congratulations!
All tests were successful.

Sections of this report:

    * Tester comments
    * Program output
    * Prerequisites
    * Environment and other context

------------------------------
TESTER COMMENTS
------------------------------

Additional comments from tester:

this report is from an automated smoke testing program
and was not reviewed by a human for accuracy

------------------------------
PROGRAM OUTPUT
------------------------------

Output from '/usr/bin/make test':

PERL_DL_NONLAZY=1 "/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Cv/*.t t/Phylogeny/*.t t/Sequence/*.t t/Stock/*.t
t/001_basics.t ............ ok
t/010_organism.t .......... ok
t/Cv/010_cvterm.t ......... ok
t/get_cvterm.t ............ ok
t/Phylogeny/phylonode.t ... ok
t/plugins.t ............... ok
t/release-eol.t ........... skipped: these tests are for release candidate testing
t/release-no-tabs.t ....... skipped: these tests are for release candidate testing
t/release-pod-coverage.t .. skipped: these tests are for release candidate testing
t/release-pod-syntax.t .... skipped: these tests are for release candidate testing
t/Sequence/010_feature.t .. ok
t/Sequence/synonym.t ...... ok
t/Stock/010_stock.t ....... ok
All tests successful.
Files=13, Tests=111, 24 wallclock secs ( 0.18 usr  0.13 sys + 12.59 cusr  7.89 csys = 20.79 CPU)
Result: PASS

------------------------------
PREREQUISITES
------------------------------

Prerequisite modules loaded:

requires:

    Module                       Need     Have    
    ---------------------------- -------- --------
    base                         0        2.22    
    Bio::PrimarySeq              0        0       
    Bio::Range                   0        0       
    Bio::Root::Version           1.005002 1.006924
    Carp                         0        1.36    
    Carp::Clan                   0        6.04    
    DBIx::Class                  0        0.082820
    DBIx::Class::Core            0        0       
    DBIx::Class::ResultSet       0        0       
    DBIx::Class::Schema          0        0       
    DBIx::Class::Tree::NestedSet 0.07     0.10    
    strict                       0        1.09    
    warnings                     0        1.34    

build_requires:

    Module                       Need     Have    
    ---------------------------- -------- --------
    DBD::SQLite                  1.14     1.48    
    FindBin                      0        1.51    
    SQL::Translator              0.11005  0.11021 
    Test::Exception              0.27     0.41    
    Test::More                   0.87     1.001014
    Test::Warn                   0        0.30    

configure_requires:

    Module                       Need     Have    
    ---------------------------- -------- --------
    ExtUtils::MakeMaker          6.30     7.04_01 


------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------

Environment variables:

    AUTOMATED_TESTING = 1
    LANG = cs_CZ.UTF-8
    PATH = /Users/petr/perl5/perlbrew/bin:/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin
    PERL5LIB = 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-0.11-wbxG1B/blib/lib:/Users/petr/.cpan/build/Module-Runtime-0.014-RWKAgu/blib/arch:/Users/petr/.cpan/build/Module-Runtime-0.014-RWKAgu/blib/lib:/Users/petr/.cpan/build/Plack-Middleware-RemoveRedundantBody-0.05-nVIfoT/blib/arch:/Users/petr/.cpan/build/Plack-Middleware-RemoveRedundantBody-0.05-nVIfoT/blib/lib:/Users/petr/.cpan/build/Plack-Middleware-FixMissingBodyInRedirect-0.12-lXHR0W/blib/arch:/Users/petr/.cpan/build/Plack-Middleware-FixMissingBodyInRedirect-0.12-lXHR0W/blib/lib:/Users/petr/.cpan/build/Class-C3-Adopt-NEXT-0.14-jDCUnO/blib/arch:/Users/petr/.cpan/build/Class-C3-Adopt-NEXT-0.14-jDCUnO/blib/lib:/Users/petr/.cpan/build/Test-Exception-0.41-Efd6OW/blib/arch:/Users/petr/.cpan/build/Test-Exception-0.41-Efd6OW/blib/lib:/Users/petr/.cpan/build/Module-Build-Tiny-0.039-X81Lkp/blib/arch:/Users/petr/.cpan/build/Module-Build-Tiny-0.039-X81Lkp/blib/lib:/Users/petr/.cpan/build/ExtUtils-InstallPaths-0.011-fqeKY_/blib/arch:/Users/petr/.cpan/build/ExtUtils-InstallPaths-0.011-fqeKY_/blib/lib:/Users/petr/.cpan/build/ExtUtils-Config-0.008-7WBr1h/blib/arch:/Users/petr/.cpan/build/ExtUtils-Config-0.008-7WBr1h/blib/lib:/Users/petr/.cpan/build/ExtUtils-Helpers-0.022-pzzbPj/blib/arch:/Users/petr/.cpan/build/ExtUtils-Helpers-0.022-pzzbPj/blib/lib:/Users/petr/.cpan/build/Class-Data-Inheritable-0.08-6dLGC2/blib/arch:/Users/petr/.cpan/build/Class-Data-Inheritable-0.08-6dLGC2/blib/lib:/Users/petr/.cpan/build/MRO-Compat-0.12-0sYH26/blib/arch:/Users/petr/.cpan/build/MRO-Compat-0.12-0sYH26/blib/lib:/Users/petr/.cpan/build/Plack-1.0039-vOlpnY/blib/arch:/Users/petr/.cpan/build/Plack-1.0039-vOlpnY/blib/lib:/Users/petr/.cpan/build/Apache-LogFormat-Compiler-0.32-TyAiy4/blib/arch:/Users/petr/.cpan/build/Apache-LogFormat-Compiler-0.32-TyAiy4/blib/lib:/Users/petr/.cpan/build/Test-MockTime-0.15-pyNeap/blib/arch:/Users/petr/.cpan/build/Test-MockTime-0.15-pyNeap/blib/lib:/Users/petr/.cpan/build/POSIX-strftime-Compiler-0.41-J2X0TV/blib/arch:/Users/petr/.cpan/build/POSIX-strftime-Compiler-0.41-J2X0TV/blib/lib:/Users/petr/.cpan/build/Devel-StackTrace-AsHTML-0.14-BHLEkQ/blib/arch:/Users/petr/.cpan/build/Devel-StackTrace-AsHTML-0.14-BHLEkQ/blib/lib:/Users/petr/.cpan/build/Test-TCP-2.14-gf2_im/blib/arch:/Users/petr/.cpan/build/Test-TCP-2.14-gf2_im/blib/lib:/Users/petr/.cpan/build/File-ShareDir-1.102-FzAnsj/blib/arch:/Users/petr/.cpan/build/File-ShareDir-1.102-FzAnsj/blib/lib:/Users/petr/.cpan/build/Class-Inspector-1.28-nyBaCm/blib/arch:/Users/petr/.cpan/build/Class-Inspector-1.28-nyBaCm/blib/lib:/Users/petr/.cpan/build/Hash-MultiValue-0.16-S67302/blib/arch:/Users/petr/.cpan/build/Hash-MultiValue-0.16-S67302/blib/lib:/Users/petr/.cpan/build/Filesys-Notify-Simple-0.12-KSMdCs/blib/arch:/Users/petr/.cpan/build/Filesys-Notify-Simple-0.12-KSMdCs/blib/lib:/Users/petr/.cpan/build/Test-SharedFork-0.35-o2M05a/blib/arch:/Users/petr/.cpan/build/Test-SharedFork-0.35-o2M05a/blib/lib:/Users/petr/.cpan/build/Stream-Buffered-0.03-SVTT4N/blib/arch:/Users/petr/.cpan/build/Stream-Buffered-0.03-SVTT4N/blib/lib:/Users/petr/.cpan/build/Devel-StackTrace-2.00-mqlJGJ/blib/arch:/Users/petr/.cpan/build/Devel-StackTrace-2.00-mqlJGJ/blib/lib:/Users/petr/.cpan/build/HTTP-Headers-Fast-0.20-GwGPwM/blib/arch:/Users/petr/.cpan/build/HTTP-Headers-Fast-0.20-GwGPwM/blib/lib:/Users/petr/.cpan/build/Test-Requires-0.10-uSR_qn/blib/arch:/Users/petr/.cpan/build/Test-Requires-0.10-uSR_qn/blib/lib:/Users/petr/.cpan/build/HTTP-Body-1.22-Kgdl9l/blib/arch:/Users/petr/.cpan/build/HTTP-Body-1.22-Kgdl9l/blib/lib:/Users/petr/.cpan/build/Cookie-Baker-0.06-7PFdl5/blib/arch:/Users/petr/.cpan/build/Cookie-Baker-0.06-7PFdl5/blib/lib:/Users/petr/.cpan/build/Test-Time-0.04-kzTGFK/blib/arch:/Users/petr/.cpan/build/Test-Time-0.04-kzTGFK/blib/lib:/Users/petr/.cpan/build/Test-Name-FromLine-0.13-jKz2Ol/blib/arch:/Users/petr/.cpan/build/Test-Name-FromLine-0.13-jKz2Ol/blib/lib:/Users/petr/.cpan/build/Test-Differences-0.64-3JfqiX/blib/arch:/Users/petr/.cpan/build/Test-Differences-0.64-3JfqiX/blib/lib:/Users/petr/.cpan/build/File-ShareDir-Install-0.10-yxnFbp/blib/arch:/Users/petr/.cpan/build/File-ShareDir-Install-0.10-yxnFbp/blib/lib:/Users/petr/.cpan/build/CGI-4.25-nsGoNG/blib/arch:/Users/petr/.cpan/build/CGI-4.25-nsGoNG/blib/lib:/Users/petr/.cpan/build/Test-NoWarnings-1.04-xTyoX4/blib/arch:/Users/petr/.cpan/build/Test-NoWarnings-1.04-xTyoX4/blib/lib:/Users/petr/.cpan/build/Test-Warn-0.30-rYhQhz/blib/arch:/Users/petr/.cpan/build/Test-Warn-0.30-rYhQhz/blib/lib:/Users/petr/.cpan/build/Sub-Uplevel-0.25-QSpJSP/blib/arch:/Users/petr/.cpan/build/Sub-Uplevel-0.25-QSpJSP/blib/lib:/Users/petr/.cpan/build/UNIVERSAL-isa-1.20150614-TeXDR3/blib/arch:/Users/petr/.cpan/build/UNIVERSAL-isa-1.20150614-TeXDR3/blib/lib
    PERL5OPT = 
    PERL5_CPANPLUS_IS_RUNNING = 70644
    PERL5_CPAN_IS_RUNNING = 70644
    PERL5_CPAN_IS_RUNNING_IN_RECURSION = 1102,70644
    PERLBREW_BASHRC_VERSION = 0.74
    PERLBREW_HOME = /Users/petr/.perlbrew
    PERLBREW_MANPATH = /Users/petr/perl5/perlbrew/perls/perl-5.22.1/man
    PERLBREW_PATH = /Users/petr/perl5/perlbrew/bin:/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin
    PERLBREW_PERL = perl-5.22.1
    PERLBREW_ROOT = /Users/petr/perl5/perlbrew
    PERLBREW_VERSION = 0.74
    PERL_CR_SMOKER_CURRENT = App-Mimosa-0.02
    PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
    PERL_MM_USE_DEFAULT = 1
    SHELL = /bin/bash
    TERM = xterm-256color
    TMPDIR = /var/folders/x5/mbl5nhls3z779qkgqvdxmbqc0000gn/T/

Perl special variables (and OS-specific diagnostics, for MSWin32):

    $^X = /Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin/perl
    $UID/$EUID = 501 / 501
    $GID = 20 20 701 12 61 79 80 81 98 33 100 204 395 398 399
    $EGID = 20 20 701 12 61 79 80 81 98 33 100 204 395 398 399

Perl module toolchain versions installed:

    Module              Have    
    ------------------- --------
    CPAN                2.11    
    CPAN::Meta          2.150001
    Cwd                 3.56    
    ExtUtils::CBuilder  0.280221
    ExtUtils::Command   1.20    
    ExtUtils::Install   2.04    
    ExtUtils::MakeMaker 7.04_01 
    ExtUtils::Manifest  1.70    
    ExtUtils::ParseXS   3.28    
    File::Spec          3.56    
    JSON                2.90    
    JSON::PP            2.27300 
    Module::Build       0.4214  
    Module::Signature   n/a     
    Parse::CPAN::Meta   1.4414  
    Test::Harness       3.35    
    Test::More          1.001014
    YAML                1.15    
    YAML::Syck          1.29    
    version             0.9909  


--

Summary of my perl5 (revision 5 version 22 subversion 1) configuration:
   
  Platform:
    osname=darwin, osvers=15.2.0, archname=darwin-2level
    uname='darwin mac.local 15.2.0 darwin kernel version 15.2.0: fri nov 13 19:56:56 pst 2015; root:xnu-3248.20.55~2release_x86_64 x86_64 '
    config_args='-de -Dprefix=/Users/petr/perl5/perlbrew/perls/perl-5.22.1 -Aeval:scriptdir=/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=undef, usemultiplicity=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include',
    optimize='-O3',
    cppflags='-fno-common -DPERL_DARWIN -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
    ccversion='', gccversion='4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.1.76)', gccosandvers=''
    intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678, doublekind=3
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16, longdblkind=3
    ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='env MACOSX_DEPLOYMENT_TARGET=10.3 cc', ldflags =' -fstack-protector-strong -L/usr/local/lib'
    libpth=/usr/local/lib /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/7.0.0/lib /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib /usr/lib
    libs=-lpthread -ldbm -ldl -lm -lutil -lc
    perllibs=-lpthread -ldl -lm -lutil -lc
    libc=, so=dylib, useshrplib=false, libperl=libperl.a
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
    cccdlflags=' ', lddlflags=' -bundle -undefined dynamic_lookup -L/usr/local/lib -fstack-protector-strong'


Characteristics of this binary (from libperl): 
  Compile-time options: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
                        PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
                        PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
                        USE_64_BIT_ALL USE_64_BIT_INT USE_LARGE_FILES
                        USE_LOCALE USE_LOCALE_COLLATE USE_LOCALE_CTYPE
                        USE_LOCALE_NUMERIC USE_LOCALE_TIME USE_PERLIO
                        USE_PERL_ATOF
  Locally applied patches:
	Devel::PatchPerl 1.38
  Built under darwin
  Compiled at Dec 16 2015 09:24:44
  %ENV:
    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    PERL5OPT=""
    PERL5_CPANPLUS_IS_RUNNING="70644"
    PERL5_CPAN_IS_RUNNING="70644"
    PERL5_CPAN_IS_RUNNING_IN_RECURSION="1102,70644"
    PERLBREW_BASHRC_VERSION="0.74"
    PERLBREW_HOME="/Users/petr/.perlbrew"
    PERLBREW_MANPATH="/Users/petr/perl5/perlbrew/perls/perl-5.22.1/man"
    PERLBREW_PATH="/Users/petr/perl5/perlbrew/bin:/Users/petr/perl5/perlbrew/perls/perl-5.22.1/bin"
    PERLBREW_PERL="perl-5.22.1"
    PERLBREW_ROOT="/Users/petr/perl5/perlbrew"
    PERLBREW_VERSION="0.74"
    PERL_CR_SMOKER_CURRENT="App-Mimosa-0.02"
    PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
    PERL_MM_USE_DEFAULT="1"
  @INC:
    /Users/petr/.cpan/build/DBIx-Class-Tree-NestedSet-0.10-ro1JSk/blib/arch
    /Users/petr/.cpan/build/DBIx-Class-Tree-NestedSet-0.10-ro1JSk/blib/lib
    /Users/petr/.cpan/build/DBICx-TestDatabase-0.05-ZCAfFb/blib/arch
    /Users/petr/.cpan/build/DBICx-TestDatabase-0.05-ZCAfFb/blib/lib
    /Users/petr/.cpan/build/Template-Toolkit-2.26-JRXOZ2/blib/arch
    /Users/petr/.cpan/build/Template-Toolkit-2.26-JRXOZ2/blib/lib
    /Users/petr/.cpan/build/AppConfig-1.71-fcW3Pu/blib/arch
    /Users/petr/.cpan/build/AppConfig-1.71-fcW3Pu/blib/lib
    /Users/petr/.cpan/build/Text-TabularDisplay-1.38-QPptyj/blib/arch
    /Users/petr/.cpan/build/Text-TabularDisplay-1.38-QPptyj/blib/lib
    /Users/petr/.cpan/build/Text-RecordParser-1.6.5-bl1OIL/blib/arch
    /Users/petr/.cpan/build/Text-RecordParser-1.6.5-bl1OIL/blib/lib
    /Users/petr/.cpan/build/Text-Autoformat-1.74-hXoTKY/blib/arch
    /Users/petr/.cpan/build/Text-Autoformat-1.74-hXoTKY/blib/lib
    /Users/petr/.cpan/build/Text-Reform-1.20-hwEo13/blib/arch
    /Users/petr/.cpan/build/Text-Reform-1.20-hwEo13/blib/lib
    /Users/petr/.cpan/build/Readonly-2.00-DTNOw2/blib/arch
    /Users/petr/.cpan/build/Readonly-2.00-DTNOw2/blib/lib
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