Alien-SeqAlignment-MMseqs2 v0.02 Perl 5 v5.34.0 i86pc-solaris-thread-multi-64
- Status
- Unknown
- From
- Chris Williams (BINGOS)
- Dist
-
Alien-SeqAlignment-MMseqs2 v0.02
- Platform
- Perl 5 v5.34.0 i86pc-solaris-thread-multi-64
- Date
- 2024-03-30 18:51:19
- ID
- 7ed9544e-eec6-11ee-98b0-b3c3213a625c
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear CHRISARG,
This is a computer-generated error report created automatically by
CPANPLUS, version 0.9914. Testers personal comments may appear
at the end of this report.
Thank you for uploading your work to CPAN. However, it appears that
there were some problems testing your distribution.
TEST RESULTS:
Below is the error stack from stage 'fetch':
cp lib/Alien/SeqAlignment/MMseqs2.pm blib/lib/Alien/SeqAlignment/MMseqs2.pm
"/home/cpan/pit/thr/perl-5.34.0/bin/perl" -MAlien::Build::MM=cmd -e prefix site /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/i86pc-solaris-thread-multi-64 /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/i86pc-solaris-thread-multi-64 /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/i86pc-solaris-thread-multi-64
Architecture detection: Unknown archname 'i86pc-solaris-thread-multi-64'. at /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/Alien/Build/Plugin/Core/Setup.pm line 247.
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! It looks like this alien is using the regular download negotiator
Alien::Build::Plugin::Download::Negotiate> plugin on a GitHub release page. This will typically not work due to changes
Alien::Build::Plugin::Download::Negotiate> in the way GitHub release page works now. The Alien should instead be updated
Alien::Build::Plugin::Download::Negotiate> to use the Download::GitHub plugin, which uses the GitHub API to find available
Alien::Build::Plugin::Download::Negotiate> releases. See: https://metacpan.org/pod/Alien::Build::Plugin::Download::GitHub
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
main> prefix /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/i86pc-solaris-thread-multi-64/auto/share/dist/Alien-SeqAlignment-MMseqs2
"/home/cpan/pit/thr/perl-5.34.0/bin/perl" -MAlien::Build::MM=cmd -e version 0.02
Architecture detection: Unknown archname 'i86pc-solaris-thread-multi-64'. at /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/Alien/Build/Plugin/Core/Setup.pm line 247.
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! It looks like this alien is using the regular download negotiator
Alien::Build::Plugin::Download::Negotiate> plugin on a GitHub release page. This will typically not work due to changes
Alien::Build::Plugin::Download::Negotiate> in the way GitHub release page works now. The Alien should instead be updated
Alien::Build::Plugin::Download::Negotiate> to use the Download::GitHub plugin, which uses the GitHub API to find available
Alien::Build::Plugin::Download::Negotiate> releases. See: https://metacpan.org/pod/Alien::Build::Plugin::Download::GitHub
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
"/home/cpan/pit/thr/perl-5.34.0/bin/perl" -MAlien::Build::MM=cmd -e download
Architecture detection: Unknown archname 'i86pc-solaris-thread-multi-64'. at /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/Alien/Build/Plugin/Core/Setup.pm line 247.
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! It looks like this alien is using the regular download negotiator
Alien::Build::Plugin::Download::Negotiate> plugin on a GitHub release page. This will typically not work due to changes
Alien::Build::Plugin::Download::Negotiate> in the way GitHub release page works now. The Alien should instead be updated
Alien::Build::Plugin::Download::Negotiate> to use the Download::GitHub plugin, which uses the GitHub API to find available
Alien::Build::Plugin::Download::Negotiate> releases. See: https://metacpan.org/pod/Alien::Build::Plugin::Download::GitHub
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
Alien::Build::Plugin::Core::Download> candidate *https://api.github.com/repos/soedinglab/MMseqs2/tarball/15-6f452
Alien::Build::Plugin::Core::Download> candidate https://api.github.com/repos/soedinglab/MMseqs2/tarball/14-7e284
Alien::Build::Plugin::Core::Download> candidate https://api.github.com/repos/soedinglab/MMseqs2/tarball/13-45111
Alien::Build::Plugin::Core::Download> candidate https://api.github.com/repos/soedinglab/MMseqs2/tarball/12-113e3
Alien::Build::Plugin::Core::Download> candidate https://api.github.com/repos/soedinglab/MMseqs2/tarball/11-e1a1c
Alien::Build::Plugin::Core::Download> candidate https://api.github.com/repos/soedinglab/MMseqs2/tarball/10-6d92c
Alien::Build::Plugin::Core::Download> candidate https://api.github.com/repos/soedinglab/MMseqs2/tarball/9-d36de
Alien::Build::Plugin::Core::Download> candidate https://api.github.com/repos/soedinglab/MMseqs2/tarball/8-fac81
Alien::Build::Plugin::Core::Download> candidate ...
Alien::Build::Plugin::Core::Download> setting version based on archive to 15-6f452
Alien::Build::Plugin::Core::Download> downloaded soedinglab-MMseqs2-15-6f452-0-g6f45232.tar.gz
"/home/cpan/pit/thr/perl-5.34.0/bin/perl" -MAlien::Build::MM=cmd -e build
Architecture detection: Unknown archname 'i86pc-solaris-thread-multi-64'. at /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/Alien/Build/Plugin/Core/Setup.pm line 247.
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! It looks like this alien is using the regular download negotiator
Alien::Build::Plugin::Download::Negotiate> plugin on a GitHub release page. This will typically not work due to changes
Alien::Build::Plugin::Download::Negotiate> in the way GitHub release page works now. The Alien should instead be updated
Alien::Build::Plugin::Download::Negotiate> to use the Download::GitHub plugin, which uses the GitHub API to find available
Alien::Build::Plugin::Download::Negotiate> releases. See: https://metacpan.org/pod/Alien::Build::Plugin::Download::GitHub
Alien::Build::Plugin::Download::Negotiate> !! WARNING !! WARNING !!
Alien::Build::CommandSequence> + mkdir build
Alien::Build::CommandSequence> + cd build
Alien::Build::CommandSequence> + /opt/ooce/bin/cmake -G Unix Makefiles -DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=true -DCMAKE_INSTALL_PREFIX:PATH=/home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/i86pc-solaris-thread-multi-64/auto/share/dist/Alien-SeqAlignment-MMseqs2 -DCMAKE_INSTALL_LIBDIR:PATH=lib -DCMAKE_MAKE_PROGRAM:PATH=make /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232
-- The CXX compiler identification is GNU 12.2.0
-- The C compiler identification is GNU 12.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Source Directory: /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232
-- Project Directory: /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232
-- Compiler is GNU
CMake Warning at CMakeLists.txt:94 (message):
CPU without native SIMD instructions. Performance will be bad.
-- ZSTD VERSION 1.3.8
-- ShellCheck disabled
-- Performing Test HAVE_POSIX_FADVISE
-- Performing Test HAVE_POSIX_FADVISE - Success
-- Performing Test HAVE_POSIX_MADVISE
-- Performing Test HAVE_POSIX_MADVISE - Success
-- Performing Test ATOMIC_LIBRARY_NATIVE
-- Performing Test ATOMIC_LIBRARY_NATIVE - Failed
-- Performing Test ATOMIC_LIBRARY_LIB
-- Performing Test ATOMIC_LIBRARY_LIB - Success
-- Found Atomic: atomic
-- IPS4O sorting works
-- Found ZLIB
-- Performing Test HAVE_ZLIB_CHECK
-- Performing Test HAVE_ZLIB_CHECK - Success
-- ZLIB works
-- Found BZLIB
-- Performing Test HAVE_BZLIB_CHECK
-- Performing Test HAVE_BZLIB_CHECK - Success
-- BZLIB works
-- Found OpenMP
-- Configuring done (4.8s)
-- Generating done (0.3s)
-- Build files have been written to: /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/build
Alien::Build::CommandSequence> + make
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[ 33%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c: In function 'base':
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds]
373 | ret->bound = s->bound;
| ^~
In function 'new_expr',
inlined from 'base' at /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:372:19:
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'
88 | te_expr *ret = malloc(size);
| ^~~~~~~~~~~~
In function 'new_expr',
inlined from 'base' at /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:366:19:
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds]
93 | ret->type = type;
| ~~~~~~~~~~^~~~~~
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'
88 | te_expr *ret = malloc(size);
| ^~~~~~~~~~~~
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c: In function 'base':
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:367:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds]
367 | ret->value = s->value;
| ^~
In function 'new_expr',
inlined from 'base' at /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:366:19:
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'
88 | te_expr *ret = malloc(size);
| ^~~~~~~~~~~~
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c: In function 'base':
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript 'te_expr[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds]
446 | ret->value = NAN;
| ^~
In function 'new_expr',
inlined from 'base' at /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:444:19:
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by 'malloc'
88 | te_expr *ret = malloc(size);
| ^~~~~~~~~~~~
[ 34%] Linking C static library libtinyexpr.a
[ 34%] Built target tinyexpr
[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o
In file included from /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/Sequence.h:8,
from /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/DBReader.h:13,
from /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/IndexReader.h:4,
from /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/alignment/Alignment.h:4,
from /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/alignment/Alignment.cpp:1:
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/MathUtil.h: In static member function 'static void MathUtil::computeFactorial(double*, size_t)':
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/MathUtil.h:233:90: error: call of overloaded 'exp(int)' is ambiguous
233 | sqrt(2 * M_PI * scoreDbl) * pow(scoreDbl / exp(1), scoreDbl) * exp(1 / (12 * scoreDbl)));
| ~~~^~~
In file included from /usr/include/math.h:35,
from /opt/gcc-12/include/c++/12.2.0/bits/std_abs.h:40,
from /opt/gcc-12/include/c++/12.2.0/cstdlib:77,
from /opt/gcc-12/include/c++/12.2.0/ext/string_conversions.h:41,
from /opt/gcc-12/include/c++/12.2.0/bits/basic_string.h:3960,
from /opt/gcc-12/include/c++/12.2.0/string:53,
from /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/DBReader.h:12:
/usr/include/iso/math_iso.h:199:28: note: candidate: 'long double std::exp(long double)'
199 | inline long double exp(long double __X) { return __expl(__X); }
| ^~~
/usr/include/iso/math_iso.h:166:22: note: candidate: 'float std::exp(float)'
166 | inline float exp(float __X) { return __expf(__X); }
| ^~~
/usr/include/iso/math_iso.h:69:15: note: candidate: 'double std::exp(double)'
69 | extern double exp(double);
| ^~~
In file included from /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/Sequence.h:11:
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/ScoreMatrix.h: In static member function 'static ScoreMatrix ScoreMatrix::unserialize(const char*, std::size_t, std::size_t)':
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/ScoreMatrix.h:44:26: error: call of overloaded 'pow(std::size_t&, std::size_t&)' is ambiguous
44 | size_t size = pow(alphabetSize, kmerSize);
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)'
226 | inline long double pow(long double __X, int __Y) {
| ^~~
/usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)'
222 | inline long double pow(long double __X, long double __Y) {
| ^~~
/usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)'
177 | inline float pow(float __X, int __Y) {
| ^~~
/usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)'
175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); }
| ^~~
/usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)'
154 | inline double pow(double __X, int __Y) {
| ^~~
/usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)'
76 | extern double pow(double, double);
| ^~~
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/ScoreMatrix.h: In static member function 'static ScoreMatrix ScoreMatrix::unserializeCopy(const char*, std::size_t, std::size_t)':
/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons/ScoreMatrix.h:53:26: error: call of overloaded 'pow(std::size_t&, std::size_t&)' is ambiguous
53 | size_t size = pow(alphabetSize, kmerSize);
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/iso/math_iso.h:226:28: note: candidate: 'long double std::pow(long double, int)'
226 | inline long double pow(long double __X, int __Y) {
| ^~~
/usr/include/iso/math_iso.h:222:28: note: candidate: 'long double std::pow(long double, long double)'
222 | inline long double pow(long double __X, long double __Y) {
| ^~~
/usr/include/iso/math_iso.h:177:22: note: candidate: 'float std::pow(float, int)'
177 | inline float pow(float __X, int __Y) {
| ^~~
/usr/include/iso/math_iso.h:175:22: note: candidate: 'float std::pow(float, float)'
175 | inline float pow(float __X, float __Y) { return __powf(__X, __Y); }
| ^~~
/usr/include/iso/math_iso.h:154:23: note: candidate: 'double std::pow(double, int)'
154 | inline double pow(double __X, int __Y) {
| ^~~
/usr/include/iso/math_iso.h:76:15: note: candidate: 'double std::pow(double, double)'
76 | extern double pow(double, double);
| ^~~
*** Error code 1
The following command caused the error:
cd /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/build/src && /usr/bin/g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/zstd/lib -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/tinyexpr -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/microtar -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/simde -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/simd -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/gzstream -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/alp -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/cacode -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/ksw2 -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/xxhash -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/lib/ips4o -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/build/generated -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/alignment -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/clustering -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/commons -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/multihit -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/prefiltering -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/linclust -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/taxonomy -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/util -I/home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/. -O3 -DNDEBUG -fPIC -fsigned-char -march=native -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/src/alignment/Alignment.cpp
make: Fatal error: Command failed for target `src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o'
Current working directory /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/build
*** Error code 1
The following command caused the error:
make -s -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build
make: Fatal error: Command failed for target `src/CMakeFiles/mmseqs-framework.dir/all'
Current working directory /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/build
*** Error code 1
The following command caused the error:
make -s -f CMakeFiles/Makefile2 all
make: Fatal error: Command failed for target `all'
Current working directory /home/cpan/pit/thr/conf/perl-5.34.0/.cpanplus/5.34.0/build/7aEnLZu583/Alien-SeqAlignment-MMseqs2-0.02/_alien/build_Br87/soedinglab-MMseqs2-6f45232/build
external command failed at /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/Alien/Build/CommandSequence.pm line 88.
*** Error code 1
make: Fatal error: Command failed for target `_alien/mm/build'
PREREQUISITES:
Here is a list of prerequisites you specified and versions we
managed to load:
Module Name Have Want
Alien::Base 2.80 0.038
Alien::Build 2.80 0.25
Alien::Build::MM 2.80 0.32
Alien::Build::Plugin::Download::Negotiate 2.80 1.30
Alien::cmake3 0.08 0.02
Archive::Tar 3.02 0
Carp 1.52 0
ExtUtils::MakeMaker 7.70 6.52
File::Spec 3.80 0
HTTP::Tiny 0.076 0.044
IO::Socket::SSL 2.085 1.56
IO::Zlib 1.14 0
Mojo::DOM58 3.001 1.00
Mozilla::CA 20240313 0
Net::SSLeay 1.94 1.49
Test::More 1.302198 0
URI 5.28 0
URI::Escape 5.28 0
parent 0.238 0
strict 1.12 0
warnings 1.51 0
Perl module toolchain versions installed:
Module Name Have
CPANPLUS 0.9914
CPANPLUS::Dist::Build 0.90
Cwd 3.80
ExtUtils::CBuilder 0.280236
ExtUtils::Command 7.70
ExtUtils::Install 2.22
ExtUtils::MakeMaker 7.70
ExtUtils::Manifest 1.75
ExtUtils::ParseXS 3.51
File::Spec 3.80
Module::Build 0.4234
Pod::Parser 0
Pod::Simple 3.42
Test2 1.302198
Test::Harness 3.48
Test::More 1.302198
version 0.9930
******************************** NOTE ********************************
The comments above are created mechanically, possibly without manual
checking by the sender. As there are many people performing automatic
tests on each upload to CPAN, it is likely that you will receive
identical messages about the same problem.
If you believe that the message is mistaken, please reply to the first
one with correction and/or additional informations, and do not take
it personally. We appreciate your patience. :)
**********************************************************************
Additional comments:
This report was machine-generated by CPANPLUS::Dist::YACSmoke 1.08.
Powered by minismokebox version 0.68
CPANPLUS is prefering Build.PL
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_GB.UTF-8
NONINTERACTIVE_TESTING = 1
PATH = /usr/bin:/usr/sbin:/sbin:/opt/ooce/bin:/usr/gnu/bin
PERL5LIB = /home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5
PERL5_CPANPLUS_IS_RUNNING = 5613
PERL5_CPANPLUS_IS_VERSION = 0.9914
PERL5_MINISMOKEBOX = 0.68
PERL5_YACSMOKE_BASE = /home/cpan/pit/thr/conf/perl-5.34.0
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_LOCAL_LIB_ROOT = /home/cpan/pit/jail/o1_Ad8gU7P
PERL_MB_OPT = --install_base "/home/cpan/pit/jail/o1_Ad8gU7P"
PERL_MM_OPT = INSTALL_BASE=/home/cpan/pit/jail/o1_Ad8gU7P
PERL_MM_USE_DEFAULT = 1
SHELL = /bin/bash
TERM = screen.xterm-256color
Perl special variables (and OS-specific diagnostics, for MSWin32):
Perl: $^X = /home/cpan/pit/thr/perl-5.34.0/bin/perl
UID: $< = 101
EUID: $> = 101
GID: $( = 101 101
EGID: $) = 101 101
-------------------------------
--
Summary of my perl5 (revision 5 version 34 subversion 0) configuration:
Platform:
osname=solaris
osvers=2.11
archname=i86pc-solaris-thread-multi-64
uname='sunos ouzel 5.11 omnios-r151038-adeb0c00cf i86pc i386 i86pc '
config_args='-des -Dprefix=/home/cpan/pit/thr/perl-5.34.0 -Dusethreads -Duse64bitall -Dcc=gcc'
hint=recommended
useposix=true
d_sigaction=define
useithreads=define
usemultiplicity=define
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
Compiler:
cc='gcc'
ccflags ='-D_REENTRANT -m64 -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2 -DPERL_USE_SAFE_PUTENV'
optimize='-O'
cppflags='-D_REENTRANT -m64 -fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong'
ccversion=''
gccversion='10.2.0'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='gcc'
ldflags =' -m64 -fstack-protector-strong -L/usr/gnu/lib '
libpth=/opt/gcc-10/lib /usr/lib /usr/gnu/lib /usr/ccs/lib
libs=-lpthread -lsocket -lnsl -ldl -lm -lc
perllibs=-lpthread -lsocket -lnsl -ldl -lm -lc
libc=/lib/libc.so
so=so
useshrplib=true
libperl=libperl.so
gnulibc_version=''
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags=' -R /home/cpan/pit/thr/perl-5.34.0/lib/5.34.0/i86pc-solaris-thread-multi-64/CORE'
cccdlflags='-fPIC'
lddlflags=' -shared -m64 -L/usr/gnu/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
MULTIPLICITY
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_IMPLICIT_CONTEXT
PERL_MALLOC_WRAP
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_SAFE_PUTENV
USE_64_BIT_ALL
USE_64_BIT_INT
USE_ITHREADS
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
USE_REENTRANT_API
USE_THREAD_SAFE_LOCALE
Built under solaris
Compiled at May 22 2021 22:14:26
%ENV:
PERL5LIB="/home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5"
PERL5_CPANPLUS_IS_RUNNING="5613"
PERL5_CPANPLUS_IS_VERSION="0.9914"
PERL5_MINISMOKEBOX="0.68"
PERL5_YACSMOKE_BASE="/home/cpan/pit/thr/conf/perl-5.34.0"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_LOCAL_LIB_ROOT="/home/cpan/pit/jail/o1_Ad8gU7P"
PERL_MB_OPT="--install_base "/home/cpan/pit/jail/o1_Ad8gU7P""
PERL_MM_OPT="INSTALL_BASE=/home/cpan/pit/jail/o1_Ad8gU7P"
PERL_MM_USE_DEFAULT="1"
@INC:
/home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/5.34.0/i86pc-solaris-thread-multi-64
/home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/5.34.0
/home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5/i86pc-solaris-thread-multi-64
/home/cpan/pit/jail/o1_Ad8gU7P/lib/perl5
/home/cpan/pit/thr/perl-5.34.0/lib/site_perl/5.34.0/i86pc-solaris-thread-multi-64
/home/cpan/pit/thr/perl-5.34.0/lib/site_perl/5.34.0
/home/cpan/pit/thr/perl-5.34.0/lib/5.34.0/i86pc-solaris-thread-multi-64
/home/cpan/pit/thr/perl-5.34.0/lib/5.34.0