BioPerl-DB v1.006900 Perl 5 v5.8.5 x86_64-linux
- Status
- Fail
- From
- Andreas J. König (ANDK)
- Dist
-
BioPerl-DB v1.006900
- Platform
- Perl 5 v5.8.5 x86_64-linux
- Date
- 2017-08-20 14:54:08
- ID
- 6b51ad38-85b7-11e7-b46a-bdb3711d39b6
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christopher Fields,
This is a computer-generated report for BioPerl-DB-1.006900
on perl 5.8.5, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
this report is from an automated smoke testing program
and was not reviewed by a human for accuracy
------------------------------
PROGRAM OUTPUT
------------------------------
Output from './Build test':
DBI connect('database=bioseqdb;host=127.0.0.1;port=3306','root',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm line 265.
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: t/01dbadaptor.t:25
-----------------------------------------------------------
# Looks like your test exited with 255 just after 8.
t/01dbadaptor.t ...
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 15/23 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::mysql::SpeciesAdaptorDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/mysql/SpeciesAdaptorDriver.pm:220
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/02species.t:29
-----------------------------------------------------------
# Looks like your test exited with 255 just after 7.
t/02species.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 60/67 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t/03simpleseq.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 8.
t/03simpleseq.t ...
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 62/70 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/04swiss.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 8.
t/04swiss.t .......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 47/55 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/05seqfeature.t:42
-----------------------------------------------------------
# Looks like your test exited with 255 just after 6.
t/05seqfeature.t ..
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 46/52 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/06comment.t:25
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t/06comment.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 9/14 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t/07dblink.t:23
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t/07dblink.t ......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 16/21 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t/08genbank.t:30
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t/08genbank.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 18/23 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/09fuzzy2.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 4.
t/09fuzzy2.t ......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 19/23 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t/10ensembl.t:26
-----------------------------------------------------------
# Looks like your test exited with 255 just after 5.
t/10ensembl.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 13/18 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/11locuslink.t:30
-----------------------------------------------------------
# Looks like your test exited with 255 just after 7.
t/11locuslink.t ...
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 106/113 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/12ontology.t:35
-----------------------------------------------------------
# Looks like your test exited with 255 just after 6.
t/12ontology.t ....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 734/740 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/13remove.t:29
-----------------------------------------------------------
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: t/13remove.t:121
-----------------------------------------------------------
# Looks like your test exited with 255 just after 3.
t/13remove.t ......
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 58/61 subtests
t/14query.t ....... ok
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: t/15cluster.t:28
-----------------------------------------------------------
# Looks like your test exited with 255 just after 7.
t/15cluster.t .....
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 155/162 subtests
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: failed to open connection: Can't connect to MySQL server on '127.0.0.1' (111)
STACK: Error::throw
STACK: Bio::Root::Root::throw /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/Bio/Root/Root.pm:447
STACK: Bio::DB::DBI::base::new_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:267
STACK: Bio::DB::DBI::base::get_connection /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/DBI/base.pm:227
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::dbh /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:1498
STACK: Bio::DB::BioSQL::BaseDriver::prepare_findbyuk_sth /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BaseDriver.pm:528
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::_find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:945
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::find_by_unique_key /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:873
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:195
STACK: Bio::DB::Persistent::PersistentObject::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:257
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::create /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:182
STACK: Bio::DB::BioSQL::BasePersistenceAdaptor::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/BioSQL/BasePersistenceAdaptor.pm:264
STACK: Bio::DB::Persistent::PersistentObject::store /tmp/loop_over_bdir-23759-VAq07s/BioPerl-DB-1.006900-0/blib/lib/Bio/DB/Persistent/PersistentObject.pm:284
STACK: t/16obda.t:36
-----------------------------------------------------------
# Looks like your test exited with 255 just after 6.
t/16obda.t ........
Dubious, test returned 255 (wstat 65280, 0xff00)
Failed 10/16 subtests
Test Summary Report
-------------------
t/01dbadaptor.t (Wstat: 65280 Tests: 8 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 8.
t/02species.t (Wstat: 65280 Tests: 7 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 67 tests but ran 7.
t/03simpleseq.t (Wstat: 65280 Tests: 8 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 70 tests but ran 8.
t/04swiss.t (Wstat: 65280 Tests: 8 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 55 tests but ran 8.
t/05seqfeature.t (Wstat: 65280 Tests: 6 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 52 tests but ran 6.
t/06comment.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 14 tests but ran 5.
t/07dblink.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 21 tests but ran 5.
t/08genbank.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 5.
t/09fuzzy2.t (Wstat: 65280 Tests: 4 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 23 tests but ran 4.
t/10ensembl.t (Wstat: 65280 Tests: 5 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 18 tests but ran 5.
t/11locuslink.t (Wstat: 65280 Tests: 7 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 113 tests but ran 7.
t/12ontology.t (Wstat: 65280 Tests: 6 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 740 tests but ran 6.
t/13remove.t (Wstat: 65280 Tests: 3 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 61 tests but ran 3.
t/15cluster.t (Wstat: 65280 Tests: 7 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 162 tests but ran 7.
t/16obda.t (Wstat: 65280 Tests: 6 Failed: 0)
Non-zero exit status: 255
Parse errors: Bad plan. You planned 16 tests but ran 6.
Files=16, Tests=113, 9 wallclock secs ( 0.07 usr 0.10 sys + 4.22 cusr 0.67 csys = 5.06 CPU)
Result: FAIL
Failed 15/16 test programs. 0/113 subtests failed.
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------ -------- --------
Bio::Root::Version 1.006900 1.007001
DBI 0 1.637
perl v5.6.1 5.008005
configure_requires:
Module Need Have
------------------ -------- --------
Module::Build 0.38 0.4224
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
AUTOMATED_TESTING = 1
LANG = en_US.UTF-8
PATH = /home/sand/bin:/usr/local/bin:/usr/bin:/bin:/usr/games:/usr/local/perl/bin:/usr/X11/bin:/sbin:/usr/sbin
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 23762
PERL5_CPAN_IS_RUNNING = 23762
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_MM_USE_DEFAULT = 1
PERL_USE_UNSAFE_INC = 1
SHELL = /usr/bin/zsh
TERM = screen
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/bin/perl
$UID/$EUID = 1005 / 1005
$GID = 1005 1005
$EGID = 1005 1005
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.18
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280226
ExtUtils::Command 7.24
ExtUtils::Install 2.14
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.94
JSON::PP 2.94
Module::Build 0.4224
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.39
Test::More 1.302090
YAML n/a
YAML::Syck 1.30
version 0.9918
--
Summary of my perl5 (revision 5 version 8 subversion 5) configuration:
Platform:
osname=linux, osvers=4.9.0-2-amd64, archname=x86_64-linux
uname='linux k93msid 4.9.0-2-amd64 #1 smp debian 4.9.18-1 (2017-03-30) x86_64 gnulinux '
config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad -Dmyhostname=k93msid -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Dlibswanted=cl pthread socket inet nsl gdbm dbm malloc dl ld sun m crypt sec util c cposix posix ucb BSD gdbm_compat -Uuseithreads -Uuselongdouble -DDEBUGGING=-g'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -pipe -I/usr/local/include'
ccversion='', gccversion='6.3.0 20170406', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.24.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.24'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: USE_64_BIT_INT USE_64_BIT_ALL USE_LARGE_FILES
Locally applied patches:
MAINT23136
Built under linux
Compiled at Apr 17 2017 10:59:35
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="23762"
PERL5_CPAN_IS_RUNNING="23762"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_MM_USE_DEFAULT="1"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/5.8.5/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/5.8.5
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5/x86_64-linux
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl/5.8.5
/home/sand/src/perl/repoperls/installed-perls/host/k93msid/perl-5.8.5/89ad/lib/site_perl
.