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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL Bio-Draw-FeatureStack-0.03 v5.25.12 GNU/Linux
Date: 2017-04-25T13:02:08Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Christian Frech,
This is a computer-generated report for Bio-Draw-FeatureStack-0.03
on perl 5.25.12, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/opt/perl-5.25.12/bin/perl5.25.12" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/function(\s+)([a-z0-9_]+)(\s*){ <-- HERE (.*?)}/ at /opt/perl-5.25.12/lib/site_perl/5.25.12/Inline/Echo.pm line 25.
Unescaped left brace in regex is deprecated here (and will be fatal in Perl 5.30), passed through in regex; marked by <-- HERE in m/function(\s+)([a-z0-9_]+)(\s*){ <-- HERE (.*?)}/ at /opt/perl-5.25.12/lib/site_perl/5.25.12/Inline/Nouse.pm line 28.
t/alt_feature.t ......... ok
t/basecase.t ............ ok
# Failed test 'Generation of feature_offset figures'
# at t/feature_offset.t line 19.
# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at /home/cpansand/.cpan/build/2017042515/Bio-Draw-FeatureStack-0.03-0/blib/lib/Bio/Draw/FeatureStack.pm line 439.
# Looks like you planned 11 tests but ran 6.
# Looks like you failed 1 test of 6 run.
t/feature_offset.t ......
Dubious, test returned 1 (wstat 256, 0x100)
Failed 6/11 subtests
# Failed test 'Generation of manuscript figure 1'
# at t/figures_manuscript.t line 17.
# died: Undefined subroutine &Bio::Graphics::Glyph::decorated_transcript::get_decorations_as_features called at /home/cpansand/.cpan/build/2017042515/Bio-Draw-FeatureStack-0.03-0/blib/lib/Bio/Draw/FeatureStack.pm line 439.
# Failed test 'Generation of manuscript figure 2'
# at t/figures_manuscript.t line 18.
# died: Can't locate object method "formatting" via package "GD::Font" at /opt/perl-5.25.12/lib/site_perl/5.25.12/GD/SVG.pm line 996.
# Looks like you planned 27 tests but ran 15.
# Looks like you failed 2 tests of 15 run.
t/figures_manuscript.t ..
Dubious, test returned 2 (wstat 512, 0x200)
Failed 14/27 subtests
t/flip_minus.t .......... ok
t/genbank.t ............. ok
t/ignore_utr.t .......... ok
t/intron_size.t ......... ok
t/ruler.t ............... ok
t/seperator.t ........... ok
t/skip_transcript.t ..... ok
t/span.t ................ ok
Test Summary Report
-------------------
t/feature_offset.t (Wstat: 256 Tests: 6 Failed: 1)
Failed test: 6
Non-zero exit status: 1
Parse errors: Bad plan. You planned 11 tests but ran 6.
t/figures_manuscript.t (Wstat: 512 Tests: 15 Failed: 2)
Failed tests: 7-8
Non-zero exit status: 2
Parse errors: Bad plan. You planned 27 tests but ran 15.
Files=12, Tests=132, 17 wallclock secs ( 0.11 usr 0.04 sys + 13.87 cusr 1.37 csys = 15.39 CPU)
Result: FAIL
Failed 2/12 test programs. 3/132 subtests failed.
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------------------------ ---- --------
Bio::Graphics 2.02 2.40
Bio::Graphics::Glyph::decorated_gene 0 1.007001
GD::SVG 0.32 0.33
Test::Exception 0 0.43
build_requires:
Module Need Have
------------------------------------ ---- --------
ExtUtils::MakeMaker 0 7.24
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = en_US.UTF-8
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB =
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 12318
PERL5_CPAN_IS_RUNNING = 12318
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 10394,12318
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /var/tmp/cpansmoker-1002/2017042403/cpanreporter_001_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
TERM = screen
TMPDIR = /var/tmp/cpansmoker-1002/2017042403
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /opt/perl-5.25.12/bin/perl5.25.12
$UID/$EUID = 1002 / 1002
$GID = 1002 1002
$EGID = 1002 1002
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.18
CPAN::Meta 2.150010
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.24
ExtUtils::Install 2.04
ExtUtils::MakeMaker 7.24
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON 2.90
JSON::PP 2.27400
Module::Build 0.4222
Module::Signature 0.81
Parse::CPAN::Meta 2.150010
Test::Harness 3.39
Test::More 1.302083
YAML 1.23
YAML::Syck 1.30
version 0.9918
--
Summary of my perl5 (revision 5 version 25 subversion 12) configuration:
Platform:
osname=linux
osvers=3.10.0-514.16.1.el7.x86_64
archname=x86_64-linux
uname='linux prod5 3.10.0-514.16.1.el7.x86_64 #1 smp wed apr 12 15:04:24 utc 2017 x86_64 x86_64 x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.25.12 -Dusedevel -Dusemallocwrap=no -Dcf_email=srezic@cpan.org'
hint=recommended
useposix=true
d_sigaction=define
useithreads=undef
usemultiplicity=undef
use64bitint=define
use64bitall=define
uselongdouble=undef
usemymalloc=n
default_inc_excludes_dot=define
bincompat5005=undef
Compiler:
cc='cc'
ccflags ='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_FORTIFY_SOURCE=2'
optimize='-O2'
cppflags='-fwrapv -fno-strict-aliasing -pipe -fstack-protector-strong -I/usr/local/include'
ccversion=''
gccversion='4.8.5 20150623 (Red Hat 4.8.5-11)'
gccosandvers=''
intsize=4
longsize=8
ptrsize=8
doublesize=8
byteorder=12345678
doublekind=3
d_longlong=define
longlongsize=8
d_longdbl=define
longdblsize=16
longdblkind=3
ivtype='long'
ivsize=8
nvtype='double'
nvsize=8
Off_t='off_t'
lseeksize=8
alignbytes=8
prototype=define
Linker and Libraries:
ld='cc'
ldflags =' -fstack-protector-strong -L/usr/local/lib'
libpth=/usr/local/lib /usr/lib /lib/../lib64 /usr/lib/../lib64 /lib /lib64 /usr/lib64 /usr/local/lib64
libs=-lpthread -lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lpthread -lnsl -ldl -lm -lcrypt -lutil -lc
libc=libc-2.17.so
so=so
useshrplib=false
libperl=libperl.a
gnulibc_version='2.17'
Dynamic Linking:
dlsrc=dl_dlopen.xs
dlext=so
d_dlsymun=undef
ccdlflags='-Wl,-E'
cccdlflags='-fPIC'
lddlflags='-shared -O2 -L/usr/local/lib -fstack-protector-strong'
Characteristics of this binary (from libperl):
Compile-time options:
HAS_TIMES
PERLIO_LAYERS
PERL_COPY_ON_WRITE
PERL_DONT_CREATE_GVSV
PERL_OP_PARENT
PERL_PRESERVE_IVUV
PERL_USE_DEVEL
USE_64_BIT_ALL
USE_64_BIT_INT
USE_LARGE_FILES
USE_LOCALE
USE_LOCALE_COLLATE
USE_LOCALE_CTYPE
USE_LOCALE_NUMERIC
USE_LOCALE_TIME
USE_PERLIO
USE_PERL_ATOF
Built under linux
Compiled at Apr 20 2017 22:37:08
%ENV:
PERL5LIB=""
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="12318"
PERL5_CPAN_IS_RUNNING="12318"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="10394,12318"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/var/tmp/cpansmoker-1002/2017042403/cpanreporter_001_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/opt/perl-5.25.12/lib/site_perl/5.25.12/x86_64-linux
/opt/perl-5.25.12/lib/site_perl/5.25.12
/opt/perl-5.25.12/lib/5.25.12/x86_64-linux
/opt/perl-5.25.12/lib/5.25.12
.