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From: metabase:user:314402c4-2aae-11df-837a-5e0a49663a4f
Subject: FAIL go-perl-0.15 v5.8.1 GNU/Linux
Date: 2016-08-28T20:59:53Z
This distribution has been tested as part of the CPAN Testers
project, supporting the Perl programming language. See
http://wiki.cpantesters.org/ for more information or email
questions to cpan-testers-discuss@perl.org
--
Dear Chris Mungall,
This is a computer-generated report for go-perl-0.15
on perl 5.8.1, created by CPAN-Reporter-1.2018.
Thank you for uploading your work to CPAN. However, there was a problem
testing your distribution.
If you think this report is invalid, please consult the CPAN Testers Wiki
for suggestions on how to avoid getting FAIL reports for missing library
or binary dependencies, unsupported operating systems, and so on:
http://wiki.cpantesters.org/wiki/CPANAuthorNotes
Sections of this report:
* Tester comments
* Program output
* Prerequisites
* Environment and other context
------------------------------
TESTER COMMENTS
------------------------------
Additional comments from tester:
none provided
------------------------------
PROGRAM OUTPUT
------------------------------
Output from '/usr/bin/make test':
PERL_DL_NONLAZY=1 "/bbbike/perl-5.8.1/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/t010build.t ............ ok
t/t020paths.t ............ ok
t/t030detecterror.t ...... ok
t/t050oboformat.t ........ ok
t/t060oboformat2.t ....... ok
t/t070parseannot2obj.t ... ok
t/t080gofmt2.t ........... ok
t/t100roundtrip.t ........ ok
t/t110basic.t ............ ok
t/t130relations.t ........ ok
t/t140subgraph.t ......... ok
t/t150xref.t ............. ok
t/t160logicaldef.t ....... ok
t/t170chadoxml.t ......... ok
t/t175chadoxml_oborel.t .. ok
t/t180ncbi_taxonomy.t .... ok
t/t200impliedlinks.t ..... ok
t/t210cache.t ............ ok
t/t220xref_esc.t ......... ok
t/t230term_expression.t .. ok
t/t240ga2obj.t ........... ok
t/t260oborel_in_chado.t .. ok
compilation error: file GO/xsl/oboxml_to_owl.xsl line 818 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
compilation error: file GO/xsl/oboxml_to_owl.xsl line 863 element attribute
xsl:attribute: The attribute name 'xmlns' is not allowed.
problem running: xsltproc GO/xsl/oboxml_to_owl.xsl TMP.14986.go-with-local-id-mapping.obo-1.xml > TMP.14986.go-with-local-id-mapping.obo-2.xml at GO/Parsers/base_parser.pm line 422.
GO::Parsers::base_parser::xsltproc("GO/xsl/oboxml_to_owl.xsl", "TMP.14986.go-with-local-id-mapping.obo-1.xml", "TMP.14986.go-with-local-id-mapping.obo-2.xml") called at GO/Parsers/base_parser.pm line 388
GO::Parsers::base_parser::parse(GO::Parsers::obo_parser=HASH(0x1181450), "./t/data/go-with-local-id-mapping.obo") called at t/t270oborel_in_owl.t line 44
t/t270oborel_in_owl.t ....
Dubious, test returned 5 (wstat 1280, 0x500)
Failed 4/4 subtests
t/t290disjoint.t ......... ok
Test Summary Report
-------------------
t/t270oborel_in_owl.t (Wstat: 1280 Tests: 0 Failed: 0)
Non-zero exit status: 5
Parse errors: Bad plan. You planned 4 tests but ran 0.
Files=24, Tests=136, 3 wallclock secs ( 0.10 usr 0.07 sys + 1.97 cusr 0.26 csys = 2.40 CPU)
Result: FAIL
Failed 1/24 test programs. 0/136 subtests failed.
Makefile:1356: recipe for target 'test_dynamic' failed
make: *** [test_dynamic] Error 255
------------------------------
PREREQUISITES
------------------------------
Prerequisite modules loaded:
requires:
Module Need Have
------------------- ---- -----
Data::Dumper 0 2.121
Data::Stag 0.07 0.14
build_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.16
configure_requires:
Module Need Have
------------------- ---- -----
ExtUtils::MakeMaker 0 7.16
------------------------------
ENVIRONMENT AND OTHER CONTEXT
------------------------------
Environment variables:
LANG = C
PATH = /usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/cpansand/bin/linux-gnu:/home/cpansand/bin/sh:/home/cpansand/bin:/usr/games:/home/cpansand/devel:/home/eserte/src/srezic-misc/scripts
PERL5LIB = /home/cpansand/.cpan/build/2016082818/Data-Stag-0.14-m32Tg5/blib/arch:/home/cpansand/.cpan/build/2016082818/Data-Stag-0.14-m32Tg5/blib/lib:/home/cpansand/.cpan/build/2016082818/IO-String-1.08-kVs5KX/blib/arch:/home/cpansand/.cpan/build/2016082818/IO-String-1.08-kVs5KX/blib/lib:/home/cpansand/.cpan/build/2016082818/libxml-perl-0.08-hiuhan/blib/arch:/home/cpansand/.cpan/build/2016082818/libxml-perl-0.08-hiuhan/blib/lib:/home/cpansand/.cpan/build/2016082818/XML-Parser-2.44-FPdXSt/blib/arch:/home/cpansand/.cpan/build/2016082818/XML-Parser-2.44-FPdXSt/blib/lib:/home/cpansand/.cpan/build/2016082818/XML-Writer-0.625-RGvwOZ/blib/arch:/home/cpansand/.cpan/build/2016082818/XML-Writer-0.625-RGvwOZ/blib/lib
PERL5OPT =
PERL5_CPANPLUS_IS_RUNNING = 12864
PERL5_CPAN_IS_RUNNING = 12864
PERL5_CPAN_IS_RUNNING_IN_RECURSION = 2934,12864
PERLDOC = -MPod::Perldoc::ToTextOverstrike
PERL_BATCH = yes
PERL_CANARY_STABILITY_NOPROMPT = 1
PERL_CPAN_REPORTER_CONFIG = /run/user/1023/cpansmoker/2016082818/cpanreporter_004_config.ini
PERL_EXTUTILS_AUTOINSTALL = --defaultdeps
PERL_USE_UNSAFE_INC = 1
SHELL = /bin/zsh
TERM = screen
TMPDIR = /run/user/1023/cpansmoker/2016082818
Perl special variables (and OS-specific diagnostics, for MSWin32):
$^X = /bbbike/perl-5.8.1/bin/perl
$UID/$EUID = 1023 / 1023
$GID = 1023 1023
$EGID = 1023 1023
Perl module toolchain versions installed:
Module Have
------------------- --------
CPAN 2.10
CPAN::Meta 2.143240
Cwd 3.62
ExtUtils::CBuilder 0.280224
ExtUtils::Command 7.16
ExtUtils::Install 1.54
ExtUtils::MakeMaker 7.16
ExtUtils::Manifest 1.70
ExtUtils::ParseXS 3.30
File::Spec 3.62
JSON n/a
JSON::PP 2.27400
Module::Build 0.4218
Module::Signature n/a
Parse::CPAN::Meta 1.4422
Test::Harness 3.36
Test::More 1.001014
YAML 1.15
YAML::Syck 1.29
version 0.9916
--
Summary of my perl5 (revision 5.0 version 8 subversion 1) configuration:
Platform:
osname=linux, osvers=3.16.0-4-amd64, archname=x86_64-linux
uname='linux eserte 3.16.0-4-amd64 #1 smp debian 3.16.7-ckt25-2 (2016-04-08) x86_64 gnulinux '
config_args='-ds -e -Dprefix=/opt/perl-5.8.1 -Dcf_email=srezic@cpan.org'
hint=recommended, useposix=true, d_sigaction=define
usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
use64bitint=define use64bitall=define uselongdouble=undef
usemymalloc=n, bincompat5005=undef
Compiler:
cc='cc', ccflags ='-fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
optimize='-O2',
cppflags='-fno-strict-aliasing -I/usr/local/include'
ccversion='', gccversion='4.9.2', gccosandvers=''
intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
alignbytes=8, prototype=define
Linker and Libraries:
ld='cc', ldflags =' -L/usr/local/lib'
libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
libc=libc-2.19.so, so=so, useshrplib=false, libperl=libperl.a
gnulibc_version='2.19'
Dynamic Linking:
dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-rdynamic'
cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'
Characteristics of this binary (from libperl):
Compile-time options: USE_64_BIT_INT USE_64_BIT_ALL USE_LARGE_FILES
Locally applied patches:
Devel::PatchPerl 1.42
Built under linux
Compiled at May 8 2016 18:17:48
%ENV:
PERL5LIB="/home/cpansand/.cpan/build/2016082818/Data-Stag-0.14-m32Tg5/blib/arch:/home/cpansand/.cpan/build/2016082818/Data-Stag-0.14-m32Tg5/blib/lib:/home/cpansand/.cpan/build/2016082818/IO-String-1.08-kVs5KX/blib/arch:/home/cpansand/.cpan/build/2016082818/IO-String-1.08-kVs5KX/blib/lib:/home/cpansand/.cpan/build/2016082818/libxml-perl-0.08-hiuhan/blib/arch:/home/cpansand/.cpan/build/2016082818/libxml-perl-0.08-hiuhan/blib/lib:/home/cpansand/.cpan/build/2016082818/XML-Parser-2.44-FPdXSt/blib/arch:/home/cpansand/.cpan/build/2016082818/XML-Parser-2.44-FPdXSt/blib/lib:/home/cpansand/.cpan/build/2016082818/XML-Writer-0.625-RGvwOZ/blib/arch:/home/cpansand/.cpan/build/2016082818/XML-Writer-0.625-RGvwOZ/blib/lib"
PERL5OPT=""
PERL5_CPANPLUS_IS_RUNNING="12864"
PERL5_CPAN_IS_RUNNING="12864"
PERL5_CPAN_IS_RUNNING_IN_RECURSION="2934,12864"
PERLDOC="-MPod::Perldoc::ToTextOverstrike"
PERL_BATCH="yes"
PERL_CANARY_STABILITY_NOPROMPT="1"
PERL_CPAN_REPORTER_CONFIG="/run/user/1023/cpansmoker/2016082818/cpanreporter_004_config.ini"
PERL_EXTUTILS_AUTOINSTALL="--defaultdeps"
PERL_USE_UNSAFE_INC="1"
@INC:
/home/cpansand/.cpan/build/2016082818/Data-Stag-0.14-m32Tg5/blib/arch
/home/cpansand/.cpan/build/2016082818/Data-Stag-0.14-m32Tg5/blib/lib
/home/cpansand/.cpan/build/2016082818/IO-String-1.08-kVs5KX/blib/arch
/home/cpansand/.cpan/build/2016082818/IO-String-1.08-kVs5KX/blib/lib
/home/cpansand/.cpan/build/2016082818/libxml-perl-0.08-hiuhan/blib/arch
/home/cpansand/.cpan/build/2016082818/libxml-perl-0.08-hiuhan/blib/lib
/home/cpansand/.cpan/build/2016082818/XML-Parser-2.44-FPdXSt/blib/arch
/home/cpansand/.cpan/build/2016082818/XML-Parser-2.44-FPdXSt/blib/lib
/home/cpansand/.cpan/build/2016082818/XML-Writer-0.625-RGvwOZ/blib/arch
/home/cpansand/.cpan/build/2016082818/XML-Writer-0.625-RGvwOZ/blib/lib
/opt/perl-5.8.1/lib/5.8.1/x86_64-linux
/opt/perl-5.8.1/lib/5.8.1
/opt/perl-5.8.1/lib/site_perl/5.8.1/x86_64-linux
/opt/perl-5.8.1/lib/site_perl/5.8.1
/opt/perl-5.8.1/lib/site_perl
.